Wall clock time and date at job start Mon Mar 30 2020 03:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86809 * 119.99736 * 2 1 4 4 H 1.48495 * 109.46848 * 239.99793 * 3 2 1 5 5 H 1.48496 * 109.47059 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46969 * 119.99762 * 3 2 1 7 7 C 1.40024 * 120.00577 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00366 * 179.97438 * 7 2 1 9 9 C 1.41284 * 119.99537 * 0.02562 * 7 2 1 10 10 N 1.33754 * 119.83482 * 0.02562 * 9 7 2 11 11 C 1.31432 * 121.66798 * 179.97438 * 10 9 7 12 12 C 1.38668 * 121.15343 * 359.74588 * 11 10 9 13 13 C 1.39271 * 119.53911 * 0.48199 * 12 11 10 14 14 O 1.35819 * 120.76782 * 179.79512 * 13 12 11 15 15 C 1.42903 * 117.00247 * 359.72872 * 14 13 12 16 16 F 1.39904 * 109.46926 * 59.99388 * 15 14 13 17 17 F 1.39901 * 109.46899 * 299.99932 * 15 14 13 18 18 C 1.39181 * 118.46111 * 359.53306 * 13 12 11 19 19 F 1.35102 * 120.57606 * 180.27122 * 18 13 12 20 20 H 0.97003 * 120.00204 * 0.02562 * 1 2 3 21 21 H 1.08004 * 119.42173 * 180.02562 * 11 10 9 22 22 H 1.08001 * 120.23333 * 180.26977 * 12 11 10 23 23 H 1.09002 * 109.47382 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6179 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2765 2.7465 0.0006 6 1 3.0952 1.6966 1.2126 7 6 2.0078 -1.2126 0.0005 8 1 3.0877 -1.2125 0.0001 9 6 1.3014 -2.4361 0.0005 10 7 -0.0362 -2.4323 -0.0005 11 6 -0.7294 -3.5490 -0.0010 12 6 -0.0995 -4.7843 -0.0058 13 6 1.2918 -4.8457 0.0001 14 8 1.9345 -6.0422 -0.0002 15 6 1.1199 -7.2163 -0.0008 16 9 0.3123 -7.2230 -1.1432 17 9 0.3120 -7.2238 1.1414 18 6 2.0084 -3.6525 0.0007 19 9 3.3594 -3.6622 0.0008 20 1 -0.4850 0.8401 -0.0004 21 1 -1.8085 -3.5035 -0.0023 22 1 -0.6838 -5.6926 -0.0106 23 1 1.7570 -8.1007 -0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307432333.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:42 Heat of formation + Delta-G solvation = -181.364711 kcal Electronic energy + Delta-G solvation = -16206.717271 eV Core-core repulsion = 12797.468866 eV Total energy + Delta-G solvation = -3409.248405 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.22635 -49.26881 -48.24450 -40.63468 -38.87631 -35.60262 -31.95669 -31.62230 -28.09610 -26.89331 -23.77015 -23.51116 -20.51170 -19.33472 -18.85022 -18.83172 -17.87741 -17.24098 -17.03153 -16.44024 -16.23338 -15.22534 -15.17812 -14.78206 -14.71494 -14.52581 -14.31929 -14.01230 -13.68100 -13.30001 -13.16686 -12.85048 -12.82022 -12.27213 -11.82317 -11.28318 -9.84649 -9.83722 -9.59098 -8.50394 -6.74539 0.57061 0.71847 1.39662 1.52516 1.53403 1.68185 2.18807 2.57884 2.65910 3.56366 3.56515 3.66321 3.76392 4.09898 4.22416 4.40367 4.95826 5.05458 5.15437 5.24876 5.43109 6.00933 6.07983 6.49028 6.68003 7.87120 8.25533 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.050996 B = 0.007664 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.933295 B = 3652.791142 C = 4027.229155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.024 3.976 3 Si 0.996 3.004 4 H -0.258 1.258 5 H -0.258 1.258 6 H -0.258 1.258 7 C -0.439 4.439 8 H 0.091 0.909 9 C 0.223 3.777 10 N -0.506 5.506 11 C 0.144 3.856 12 C -0.358 4.358 13 C 0.136 3.864 14 O -0.335 6.335 15 C 0.407 3.593 16 F -0.209 7.209 17 F -0.209 7.209 18 C -0.133 4.133 19 F -0.156 7.156 20 H 0.290 0.710 21 H 0.163 0.837 22 H 0.139 0.861 23 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 -7.370 -0.005 7.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.200 4.200 3 Si 0.814 3.186 4 H -0.182 1.182 5 H -0.182 1.182 6 H -0.182 1.182 7 C -0.468 4.468 8 H 0.109 0.891 9 C 0.099 3.901 10 N -0.221 5.221 11 C -0.023 4.023 12 C -0.382 4.382 13 C 0.086 3.914 14 O -0.252 6.252 15 C 0.319 3.681 16 F -0.191 7.191 17 F -0.191 7.191 18 C -0.157 4.157 19 F -0.136 7.136 20 H 0.101 0.899 21 H 0.180 0.820 22 H 0.156 0.844 23 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 0.196 -6.470 -0.005 6.473 hybrid contribution 0.531 -0.472 0.001 0.710 sum 0.727 -6.942 -0.004 6.980 Atomic orbital electron populations 1.70158 1.08891 1.30377 1.25872 1.27073 0.95930 1.04623 0.92423 0.85057 0.78689 0.74518 0.80317 1.18162 1.18180 1.18171 1.20001 0.95223 0.90188 1.41415 0.89088 1.18915 0.89190 0.90974 0.90995 1.68845 1.05519 1.27963 1.19762 1.22996 1.00709 0.87470 0.91171 1.21754 0.91156 1.00917 1.24391 1.18992 0.92082 0.83060 0.97225 1.86527 1.37143 1.13033 1.88491 1.24309 0.81879 0.90907 0.71051 1.93056 1.76706 1.96698 1.52641 1.93056 1.76693 1.96696 1.52654 1.18328 0.76958 0.93006 1.27436 1.91228 1.29218 1.97234 1.95907 0.89914 0.82024 0.84350 0.74416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.87 11.46 21.84 0.25 -37.62 14 2 C 0.02 1.20 5.50 85.29 0.47 1.66 14 3 Si 1.00 36.82 29.56 68.60 2.03 38.85 14 4 H -0.26 -9.28 7.11 99.48 0.71 -8.58 14 5 H -0.26 -8.77 7.11 99.48 0.71 -8.06 14 6 H -0.26 -9.29 7.11 99.48 0.71 -8.58 14 7 C -0.44 -24.21 8.99 23.45 0.21 -23.99 14 8 H 0.09 4.84 7.42 -2.92 -0.02 4.82 14 9 C 0.22 12.76 6.56 40.20 0.26 13.03 14 10 N -0.51 -28.01 7.86 -189.13 -1.49 -29.50 14 11 C 0.14 6.82 11.17 84.86 0.95 7.77 14 12 C -0.36 -16.10 8.35 22.62 0.19 -15.91 14 13 C 0.14 6.53 6.52 22.75 0.15 6.68 14 14 O -0.33 -13.21 10.35 -91.52 -0.95 -14.16 14 15 C 0.41 11.16 5.98 113.37 0.68 11.84 14 16 F -0.21 -6.36 15.61 44.97 0.70 -5.66 14 17 F -0.21 -6.37 15.64 44.97 0.70 -5.66 14 18 C -0.13 -7.24 7.35 23.10 0.17 -7.07 14 19 F -0.16 -8.34 16.46 44.97 0.74 -7.60 14 20 H 0.29 13.24 8.29 -92.71 -0.77 12.47 14 21 H 0.16 6.46 8.06 -2.91 -0.02 6.44 14 22 H 0.14 5.46 5.25 -2.91 -0.02 5.45 14 23 H 0.24 3.19 8.14 -2.39 -0.02 3.17 14 Total: -1.00 -66.56 225.84 6.34 -60.22 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.27 Total: 7.12 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 3.08 Total: -5.99 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -1.24 Total: -67.12 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.95 Total: -14.16 kcal Atomic # 9 Polarization: -21.07 SS G_CDS: 2.15 Total: -18.93 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Total: -66.56 6.34 -60.22 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307432333.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.143 kcal (2) G-P(sol) polarization free energy of solvation -66.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds