Wall clock time and date at job start Mon Mar 30 2020 03:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86804 * 119.99638 * 2 1 4 4 H 1.48494 * 109.47475 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47249 * 120.00173 * 3 2 1 6 6 H 1.48507 * 109.46999 * 239.99674 * 3 2 1 7 7 C 1.40000 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00092 * 2.58996 * 7 2 1 9 9 C 1.41170 * 120.00011 * 182.58413 * 7 2 1 10 10 C 1.40783 * 119.74664 * 186.80815 * 9 7 2 11 11 C 1.36863 * 119.19724 * 179.76829 * 10 9 7 12 12 C 1.50694 * 120.66767 * 180.24483 * 11 10 9 13 13 F 1.39900 * 109.47409 * 0.26209 * 12 11 10 14 14 F 1.39896 * 109.47294 * 120.26275 * 12 11 10 15 15 F 1.39903 * 109.47255 * 240.26255 * 12 11 10 16 16 C 1.39596 * 118.66452 * 0.50247 * 11 10 9 17 17 O 1.35673 * 120.29007 * 179.72273 * 16 11 10 18 18 C 1.39521 * 119.42754 * 359.74262 * 16 11 10 19 19 N 1.31342 * 120.77192 * 0.02562 * 18 16 11 20 20 H 0.97008 * 119.99962 * 174.85553 * 1 2 3 21 21 H 1.08006 * 120.39832 * 359.97438 * 10 9 7 22 22 H 0.96703 * 114.00045 * 270.02670 * 17 16 11 23 23 H 1.08001 * 119.61420 * 179.97438 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 1.2767 2.7465 -0.0006 5 1 3.0954 1.6966 1.2125 6 1 3.0955 1.6965 -1.2125 7 6 2.0078 -1.2124 0.0005 8 1 1.4687 -2.1473 -0.0413 9 6 3.4184 -1.2129 0.0557 10 6 4.1227 -2.4233 -0.0886 11 6 5.4903 -2.4102 -0.0381 12 6 6.2776 -3.6856 -0.1942 13 9 5.3977 -4.7562 -0.3860 14 9 7.1275 -3.5767 -1.3000 15 9 7.0383 -3.9081 0.9586 16 6 6.1411 -1.1922 0.1663 17 8 7.4955 -1.1419 0.2276 18 6 5.3867 -0.0271 0.3074 19 7 4.0751 -0.0648 0.2506 20 1 -0.4850 -0.8367 -0.0753 21 1 3.5902 -3.3506 -0.2407 22 1 7.8534 -1.2557 1.1187 23 1 5.8871 0.9168 0.4661 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307443236.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:22 Heat of formation + Delta-G solvation = -200.381426 kcal Electronic energy + Delta-G solvation = -16352.037384 eV Core-core repulsion = 12941.964353 eV Total energy + Delta-G solvation = -3410.073032 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -51.21350 -48.74161 -48.65906 -41.04733 -38.13466 -35.72701 -33.94010 -31.90425 -27.51556 -27.12920 -23.97207 -23.04220 -20.73275 -19.71112 -19.54722 -19.32432 -18.61181 -17.38573 -16.61470 -16.29430 -15.58667 -15.47027 -15.28330 -15.12261 -14.91142 -14.84859 -14.75090 -14.61821 -14.26840 -13.61390 -13.23088 -12.75702 -12.54692 -11.77241 -11.60500 -11.38220 -10.92151 -9.95107 -9.73030 -9.40871 -6.93109 0.07247 0.36118 1.59278 1.63595 1.65882 2.06801 2.41748 2.45157 2.65342 3.01366 3.17262 3.35824 3.50677 3.80101 4.28380 4.35867 4.78859 4.88821 5.06520 5.26982 5.37693 5.84977 6.02501 6.42058 6.88385 7.29449 7.84000 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.039663 B = 0.009314 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.783030 B = 3005.549699 C = 3526.143887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.017 3.983 3 Si 1.181 2.819 4 H -0.327 1.327 5 H -0.270 1.270 6 H -0.292 1.292 7 C -0.481 4.481 8 H 0.077 0.923 9 C 0.227 3.773 10 C -0.208 4.208 11 C -0.128 4.128 12 C 0.521 3.479 13 F -0.180 7.180 14 F -0.175 7.175 15 F -0.173 7.173 16 C -0.052 4.052 17 O -0.486 6.486 18 C 0.140 3.860 19 N -0.566 5.566 20 H 0.286 0.714 21 H 0.130 0.870 22 H 0.391 0.609 23 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.276 -2.952 1.567 10.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.202 4.202 3 Si 1.012 2.988 4 H -0.260 1.260 5 H -0.197 1.197 6 H -0.220 1.220 7 C -0.513 4.513 8 H 0.095 0.905 9 C 0.105 3.895 10 C -0.230 4.230 11 C -0.135 4.135 12 C 0.467 3.533 13 F -0.161 7.161 14 F -0.156 7.156 15 F -0.155 7.155 16 C -0.101 4.101 17 O -0.295 6.295 18 C -0.022 4.022 19 N -0.286 5.286 20 H 0.097 0.903 21 H 0.148 0.852 22 H 0.247 0.753 23 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 9.452 -0.691 1.113 9.543 hybrid contribution 0.357 -3.229 0.259 3.259 sum 9.810 -3.919 1.372 10.652 Atomic orbital electron populations 1.70670 1.08494 1.33221 1.30855 1.28613 0.95524 1.07926 0.88150 0.81505 0.70193 0.67620 0.79493 1.26014 1.19689 1.22029 1.20863 0.90946 0.96528 1.42940 0.90485 1.18703 0.94109 0.87434 0.89303 1.21345 0.92143 0.99838 1.09719 1.20370 0.94687 0.92496 1.05988 1.18036 0.77474 0.83807 0.74012 1.93143 1.69047 1.58911 1.95042 1.93191 1.72106 1.96211 1.54102 1.93163 1.77042 1.95374 1.49889 1.18419 0.84161 0.91402 1.16142 1.84812 1.15049 1.94716 1.34910 1.23169 0.88793 0.98249 0.91988 1.66736 1.09821 1.27831 1.24237 0.90273 0.85196 0.75346 0.80309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.10 13.65 21.83 0.30 -41.80 14 2 C 0.02 0.87 5.52 85.28 0.47 1.34 14 3 Si 1.18 53.09 25.55 68.60 1.75 54.85 14 4 H -0.33 -14.54 7.11 99.48 0.71 -13.83 14 5 H -0.27 -11.71 6.67 99.48 0.66 -11.04 14 6 H -0.29 -13.12 7.11 99.48 0.71 -12.41 14 7 C -0.48 -24.68 9.57 23.42 0.22 -24.46 14 8 H 0.08 3.98 8.05 -2.91 -0.02 3.95 14 9 C 0.23 10.94 6.39 40.20 0.26 11.19 14 10 C -0.21 -8.98 9.17 22.57 0.21 -8.78 14 11 C -0.13 -4.98 5.37 -19.86 -0.11 -5.09 14 12 C 0.52 17.96 3.02 71.23 0.22 18.17 14 13 F -0.18 -6.15 16.04 44.97 0.72 -5.43 14 14 F -0.17 -6.07 17.03 44.97 0.77 -5.30 14 15 F -0.17 -5.44 17.03 44.97 0.77 -4.67 14 16 C -0.05 -1.92 6.66 22.91 0.15 -1.77 14 17 O -0.49 -14.92 12.60 -89.90 -1.13 -16.05 14 18 C 0.14 5.36 11.15 85.08 0.95 6.31 14 19 N -0.57 -25.84 4.54 -188.58 -0.86 -26.70 14 20 H 0.29 14.28 8.72 -92.70 -0.81 13.47 14 21 H 0.13 5.36 7.22 -2.91 -0.02 5.34 14 22 H 0.39 8.39 9.06 -74.06 -0.67 7.72 14 23 H 0.18 5.51 8.06 -2.91 -0.02 5.49 14 Total: -1.00 -54.70 225.27 5.21 -49.49 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: 0.53 Total: -1.31 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 2.37 Total: -3.07 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -0.56 Total: -68.50 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -1.13 Total: -16.05 kcal Atomic # 9 Polarization: -17.66 SS G_CDS: 2.25 Total: -15.40 kcal Atomic # 14 Polarization: 53.09 SS G_CDS: 1.75 Total: 54.85 kcal Total: -54.70 5.21 -49.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307443236.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.894 kcal (2) G-P(sol) polarization free energy of solvation -54.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds