Wall clock time and date at job start Mon Mar 30 2020 03:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30781 * 1 3 3 Si 1.86801 * 120.00453 * 2 1 4 4 H 1.48497 * 109.46913 * 274.98451 * 3 2 1 5 5 H 1.48501 * 109.47135 * 34.98073 * 3 2 1 6 6 H 1.48492 * 109.47081 * 154.98359 * 3 2 1 7 7 C 1.40005 * 119.99499 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99971 * 186.27875 * 7 2 1 9 9 C 1.41172 * 120.00391 * 6.27893 * 7 2 1 10 10 N 1.33712 * 119.74149 * 353.57635 * 9 7 2 11 11 C 1.31328 * 121.42761 * 179.97438 * 10 9 7 12 12 C 1.39548 * 120.76824 * 0.02562 * 11 10 9 13 13 O 1.35679 * 120.28506 * 180.02562 * 12 11 10 14 14 C 1.39555 * 119.42747 * 359.70768 * 12 11 10 15 15 C 1.36889 * 118.67027 * 0.53429 * 14 12 11 16 16 C 1.50698 * 120.40628 * 179.76358 * 15 14 12 17 17 F 1.39907 * 109.47083 * 359.72080 * 16 15 14 18 18 F 1.39900 * 109.47510 * 239.72496 * 16 15 14 19 19 F 1.39897 * 109.47402 * 119.72130 * 16 15 14 20 20 H 0.97001 * 119.99810 * 0.02562 * 1 2 3 21 21 H 1.07998 * 119.61130 * 180.02562 * 11 10 9 22 22 H 0.96707 * 114.00060 * 89.99966 * 13 12 11 23 23 H 1.08004 * 120.66412 * 180.29768 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.3841 2.1071 -1.3948 5 1 1.4961 2.6200 0.8027 6 1 3.5881 1.4119 0.5920 7 6 2.0077 -1.2125 0.0005 8 1 3.0829 -1.2154 0.1028 9 6 1.3082 -2.4315 -0.1326 10 7 -0.0289 -2.4327 -0.1294 11 6 -0.7130 -3.5471 -0.2516 12 6 -0.0612 -4.7734 -0.3889 13 8 -0.7777 -5.9187 -0.5149 14 6 1.3337 -4.8108 -0.4022 15 6 2.0235 -3.6360 -0.2681 16 6 3.5305 -3.6317 -0.2718 17 9 4.0003 -4.9414 -0.4183 18 9 3.9984 -3.1008 0.9350 19 9 3.9920 -2.8490 -1.3356 20 1 -0.4850 0.8401 -0.0004 21 1 -1.7924 -3.5141 -0.2456 22 1 -0.9869 -6.1532 -1.4295 23 1 1.8586 -5.7483 -0.5123 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307444097.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:18 Heat of formation + Delta-G solvation = -168.127517 kcal Electronic energy + Delta-G solvation = -16492.697328 eV Core-core repulsion = 13084.022931 eV Total energy + Delta-G solvation = -3408.674397 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.20201 -46.77482 -46.57771 -38.82352 -36.20325 -33.68736 -31.64265 -29.63041 -26.12685 -24.74965 -21.96913 -21.17201 -17.98120 -17.91479 -17.50002 -17.48229 -16.01699 -15.70353 -14.83586 -14.52143 -13.83169 -13.56064 -13.53736 -13.13907 -12.94170 -12.83697 -12.66153 -12.18998 -12.18224 -11.39292 -11.29477 -11.21329 -10.70693 -10.42799 -10.11807 -9.57110 -8.76520 -7.95558 -7.80506 -6.78664 -4.90307 2.23935 2.52519 2.95720 2.99939 3.01566 3.74363 3.75252 4.35771 4.90234 5.08486 5.21113 5.44535 5.68551 5.80984 5.95130 6.36795 6.71506 6.87956 6.98943 7.20387 7.45539 7.86020 8.17119 8.40916 8.64814 9.65529 9.92907 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.023366 B = 0.012932 C = 0.008795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.055467 B = 2164.573099 C = 3182.741264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.696 5.696 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.399 4.399 8 H 0.095 0.905 9 C 0.271 3.729 10 N -0.463 5.463 11 C 0.143 3.857 12 C -0.122 4.122 13 O -0.494 6.494 14 C -0.017 4.017 15 C -0.346 4.346 16 C 0.526 3.474 17 F -0.199 7.199 18 F -0.186 7.186 19 F -0.185 7.185 20 H 0.281 0.719 21 H 0.133 0.867 22 H 0.355 0.645 23 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.209 -1.906 -1.892 3.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.164 4.164 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.427 4.427 8 H 0.113 0.887 9 C 0.149 3.851 10 N -0.176 5.176 11 C -0.029 4.029 12 C -0.170 4.170 13 O -0.299 6.299 14 C -0.042 4.042 15 C -0.352 4.352 16 C 0.472 3.528 17 F -0.181 7.181 18 F -0.168 7.168 19 F -0.166 7.166 20 H 0.092 0.908 21 H 0.150 0.850 22 H 0.206 0.794 23 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.726 -0.917 -1.152 2.269 hybrid contribution 0.963 -0.245 -0.666 1.196 sum 2.689 -1.162 -1.817 3.447 Atomic orbital electron populations 1.70117 1.07468 1.28956 1.24901 1.26197 0.95061 1.01788 0.93331 0.86153 0.80763 0.79723 0.79582 1.18922 1.19616 1.17918 1.19982 0.95566 0.89561 1.37600 0.88730 1.18167 0.88295 0.90417 0.88189 1.69000 1.06444 1.25060 1.17052 1.23230 0.99656 0.87877 0.92139 1.18960 0.89247 0.86712 1.22104 1.84876 1.74097 1.40867 1.30091 1.20739 0.93828 0.96350 0.93266 1.20128 0.89675 0.97079 1.28357 1.18156 0.89607 0.71874 0.73206 1.93048 1.90720 1.38596 1.95704 1.93130 1.90587 1.86496 1.46543 1.93133 1.90736 1.75268 1.57508 0.90761 0.84963 0.79426 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.26 11.48 55.55 0.64 -16.63 14 2 C 0.06 1.56 5.49 -17.34 -0.10 1.46 14 3 Si 0.92 17.72 29.57 -169.99 -5.03 12.70 14 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 14 5 H -0.27 -5.07 7.11 56.52 0.40 -4.67 14 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 14 7 C -0.40 -10.23 8.15 -37.81 -0.31 -10.54 14 8 H 0.09 2.35 5.52 -52.49 -0.29 2.06 14 9 C 0.27 7.12 6.53 -84.99 -0.55 6.57 14 10 N -0.46 -12.13 7.88 -10.96 -0.09 -12.21 14 11 C 0.14 3.31 11.15 -17.28 -0.19 3.12 14 12 C -0.12 -2.68 6.76 -38.60 -0.26 -2.94 14 13 O -0.49 -9.44 13.51 -18.74 -0.25 -9.70 14 14 C -0.02 -0.38 9.43 -39.58 -0.37 -0.75 14 15 C -0.35 -8.34 5.40 -104.16 -0.56 -8.90 14 16 C 0.53 11.67 2.79 36.00 0.10 11.77 14 17 F -0.20 -4.04 16.02 2.25 0.04 -4.00 14 18 F -0.19 -4.16 15.90 2.25 0.04 -4.12 14 19 F -0.19 -4.09 16.13 2.25 0.04 -4.05 14 20 H 0.28 6.22 8.30 -40.82 -0.34 5.88 14 21 H 0.13 2.71 8.06 -52.49 -0.42 2.28 14 22 H 0.35 5.02 9.06 45.56 0.41 5.44 14 23 H 0.12 2.33 7.21 -52.48 -0.38 1.95 14 LS Contribution 225.66 15.07 3.40 3.40 Total: -1.00 -27.79 225.66 -3.28 -31.07 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 0.19 Total: 3.76 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.25 Total: -0.22 kcal Atomic # 7 Polarization: -29.39 SS G_CDS: 0.55 Total: -28.84 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.25 Total: -9.70 kcal Atomic # 9 Polarization: -12.28 SS G_CDS: 0.11 Total: -12.17 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -27.79 -3.28 -31.07 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307444097.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.060 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds