Wall clock time and date at job start Mon Mar 30 2020 03:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86802 * 119.99736 * 2 1 4 4 H 1.48499 * 109.46907 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47369 * 300.00293 * 3 2 1 6 6 H 1.48503 * 109.46820 * 60.00346 * 3 2 1 7 7 C 1.40017 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99754 * 163.14947 * 7 2 1 9 9 C 1.41561 * 120.00043 * 343.14990 * 7 2 1 10 10 C 1.41069 * 120.98646 * 156.15054 * 9 7 2 11 11 C 1.37926 * 118.96579 * 179.97438 * 10 9 7 12 12 F 1.35097 * 119.48889 * 180.02562 * 11 10 9 13 13 N 1.32269 * 121.02472 * 359.97438 * 11 10 9 14 14 C 1.32406 * 122.20848 * 359.72573 * 13 11 10 15 15 O 1.35698 * 119.54870 * 180.29492 * 14 13 11 16 16 C 1.42902 * 117.00252 * 0.24506 * 15 14 13 17 17 F 1.39904 * 109.46861 * 300.00395 * 16 15 14 18 18 F 1.39906 * 109.46765 * 59.99839 * 16 15 14 19 19 C 1.38410 * 120.90604 * 0.54199 * 14 13 11 20 20 H 0.97000 * 120.00082 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.51700 * 359.97438 * 10 9 7 22 22 H 1.08989 * 109.47560 * 179.97438 * 16 15 14 23 23 H 1.07999 * 120.56525 * 179.74909 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3966 -1.2124 6 1 1.8827 2.3964 1.2126 7 6 2.0076 -1.2126 -0.0005 8 1 3.0528 -1.2325 -0.2717 9 6 1.3454 -2.4124 0.3543 10 6 1.8203 -3.6634 -0.0923 11 6 1.1431 -4.8062 0.2790 12 9 1.5889 -6.0099 -0.1423 13 7 0.0645 -4.7420 1.0418 14 6 -0.4155 -3.5923 1.4900 15 8 -1.5228 -3.5896 2.2744 16 6 -2.1075 -4.8583 2.5758 17 9 -2.4902 -5.4894 1.3873 18 9 -1.1732 -5.6546 3.2468 19 6 0.1937 -2.3926 1.1652 20 1 -0.4850 0.8400 0.0004 21 1 2.7005 -3.7254 -0.7151 22 1 -2.9827 -4.7138 3.2090 23 1 -0.2049 -1.4577 1.5305 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307453837.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:47 Heat of formation + Delta-G solvation = -188.819173 kcal Electronic energy + Delta-G solvation = -16133.990787 eV Core-core repulsion = 12724.419132 eV Total energy + Delta-G solvation = -3409.571655 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.90278 -49.80223 -48.05659 -40.87185 -38.48869 -36.05792 -32.85304 -30.88591 -28.32373 -26.75672 -24.05397 -23.35288 -20.58620 -19.30400 -18.78000 -18.70863 -17.73471 -17.12557 -16.85985 -16.70090 -16.22226 -15.89664 -15.38196 -14.78604 -14.74064 -14.41353 -14.39239 -13.81420 -13.41848 -13.13877 -13.02722 -12.87903 -12.71231 -12.28102 -11.94121 -11.33748 -10.52418 -10.24827 -9.33347 -8.84561 -6.77745 0.50595 0.68433 1.42875 1.51987 1.60414 1.78513 2.16905 2.53050 2.66159 2.97173 3.35789 3.75719 3.90245 4.12914 4.51603 4.74400 4.89735 5.08120 5.23273 5.45194 5.72679 6.06434 6.37607 6.54577 6.61740 7.01679 8.10990 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.032993 B = 0.008495 C = 0.007165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.470800 B = 3295.256008 C = 3906.891285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.037 3.963 3 Si 0.997 3.003 4 H -0.251 1.251 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.453 4.453 8 H 0.102 0.898 9 C 0.135 3.865 10 C -0.314 4.314 11 C 0.324 3.676 12 F -0.133 7.133 13 N -0.656 5.656 14 C 0.313 3.687 15 O -0.328 6.328 16 C 0.413 3.587 17 F -0.215 7.215 18 F -0.214 7.214 19 C -0.247 4.247 20 H 0.300 0.700 21 H 0.136 0.864 22 H 0.237 0.763 23 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 0.645 3.612 4.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.183 4.183 3 Si 0.816 3.184 4 H -0.174 1.174 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.482 4.482 8 H 0.120 0.880 9 C 0.127 3.873 10 C -0.339 4.339 11 C 0.176 3.824 12 F -0.112 7.112 13 N -0.391 5.391 14 C 0.143 3.857 15 O -0.241 6.241 16 C 0.324 3.676 17 F -0.197 7.197 18 F -0.196 7.196 19 C -0.270 4.270 20 H 0.112 0.888 21 H 0.154 0.846 22 H 0.253 0.747 23 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.021 0.113 3.908 4.940 hybrid contribution 0.621 0.420 -0.481 0.891 sum -2.400 0.533 3.427 4.217 Atomic orbital electron populations 1.69807 1.09504 1.32079 1.30450 1.27042 0.95562 1.05245 0.90452 0.84923 0.79513 0.74753 0.79241 1.17443 1.18738 1.18578 1.20080 0.98786 0.90775 1.38590 0.88023 1.17719 0.89719 0.92750 0.87066 1.21651 1.07700 0.91364 1.13157 1.17427 0.90888 0.80150 0.93946 1.91473 1.87464 1.44586 1.87688 1.66030 1.19282 1.29786 1.23959 1.18962 0.86710 0.89306 0.90704 1.86731 1.39966 1.32452 1.64951 1.24124 0.88931 0.74274 0.80264 1.93031 1.91020 1.83468 1.52158 1.93030 1.70504 1.75860 1.80166 1.21203 1.02585 0.95361 1.07850 0.88812 0.84627 0.74702 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.42 10.93 21.84 0.24 -37.18 14 2 C 0.04 1.66 5.20 85.29 0.44 2.11 14 3 Si 1.00 33.08 29.59 68.60 2.03 35.11 14 4 H -0.25 -8.09 7.11 99.48 0.71 -7.39 14 5 H -0.26 -8.38 7.11 99.48 0.71 -7.67 14 6 H -0.26 -8.38 7.11 99.48 0.71 -7.67 14 7 C -0.45 -21.94 9.12 23.52 0.21 -21.73 14 8 H 0.10 4.57 7.90 -2.91 -0.02 4.55 14 9 C 0.14 6.99 5.60 -21.12 -0.12 6.87 14 10 C -0.31 -15.48 9.87 22.89 0.23 -15.26 14 11 C 0.32 16.33 8.39 84.55 0.71 17.04 14 12 F -0.13 -6.20 17.28 44.97 0.78 -5.42 14 13 N -0.66 -33.79 8.04 -310.46 -2.50 -36.28 14 14 C 0.31 15.74 7.18 84.65 0.61 16.35 14 15 O -0.33 -13.85 10.41 -90.18 -0.94 -14.79 14 16 C 0.41 13.78 6.06 113.37 0.69 14.47 14 17 F -0.21 -8.32 16.56 44.97 0.74 -7.57 14 18 F -0.21 -8.10 16.57 44.97 0.75 -7.35 14 19 C -0.25 -12.84 8.72 22.96 0.20 -12.64 14 20 H 0.30 12.46 8.29 -92.71 -0.77 11.69 14 21 H 0.14 6.04 8.06 -2.91 -0.02 6.02 14 22 H 0.24 4.24 8.14 -2.39 -0.02 4.22 14 23 H 0.13 7.01 6.20 -2.91 -0.02 6.99 14 Total: -1.00 -60.87 229.42 5.34 -55.53 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.27 Total: 10.74 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 2.97 Total: 7.21 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -2.26 Total: -73.46 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.94 Total: -14.79 kcal Atomic # 9 Polarization: -22.62 SS G_CDS: 2.27 Total: -20.35 kcal Atomic # 14 Polarization: 33.08 SS G_CDS: 2.03 Total: 35.11 kcal Total: -60.87 5.34 -55.53 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307453837.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.286 kcal (2) G-P(sol) polarization free energy of solvation -60.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds