Wall clock time and date at job start Mon Mar 30 2020 03:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86793 * 120.00143 * 2 1 4 4 H 1.48499 * 109.47236 * 275.40244 * 3 2 1 5 5 H 1.48500 * 109.47105 * 35.40465 * 3 2 1 6 6 H 1.48504 * 109.47213 * 155.40173 * 3 2 1 7 7 C 1.39921 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00008 * 341.82317 * 7 2 1 9 9 C 1.41088 * 119.99681 * 161.82955 * 7 2 1 10 10 C 1.41069 * 120.66031 * 330.32456 * 9 7 2 11 11 C 1.36869 * 118.40798 * 180.02562 * 10 9 7 12 12 C 1.39027 * 119.68216 * 359.97438 * 11 10 9 13 13 F 1.35104 * 119.31920 * 180.02562 * 12 11 10 14 14 N 1.32242 * 121.36202 * 0.02978 * 12 11 10 15 15 C 1.32091 * 121.71281 * 359.97025 * 14 12 11 16 16 O 1.35388 * 119.91803 * 180.02562 * 15 14 12 17 17 C 1.42901 * 117.00572 * 0.02562 * 16 15 14 18 18 F 1.39896 * 109.47045 * 300.00125 * 17 16 15 19 19 F 1.39907 * 109.46545 * 59.99980 * 17 16 15 20 20 H 0.96998 * 119.99754 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.79790 * 0.02562 * 10 9 7 22 22 H 1.07994 * 120.16330 * 179.97438 * 11 10 9 23 23 H 1.08995 * 109.47334 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3763 2.1123 -1.3938 5 1 1.5022 2.6169 0.8111 6 1 3.5930 1.4098 0.5828 7 6 2.0085 -1.2118 -0.0005 8 1 1.5089 -2.1238 0.2908 9 6 3.3666 -1.2421 -0.3816 10 6 3.8740 -0.3096 -1.3107 11 6 5.1986 -0.3813 -1.6479 12 6 6.0033 -1.3589 -1.0737 13 9 7.3098 -1.4227 -1.4114 14 7 5.5161 -2.2277 -0.2038 15 6 4.2465 -2.2082 0.1604 16 8 3.7864 -3.1148 1.0544 17 6 4.7289 -4.0614 1.5621 18 9 5.2540 -4.8104 0.5036 19 9 5.7654 -3.3839 2.2133 20 1 -0.4850 0.8400 -0.0004 21 1 3.2327 0.4428 -1.7455 22 1 5.6168 0.3181 -2.3566 23 1 4.2313 -4.7273 2.2671 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307522557.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:31 Heat of formation + Delta-G solvation = -182.622224 kcal Electronic energy + Delta-G solvation = -16376.663748 eV Core-core repulsion = 12967.360813 eV Total energy + Delta-G solvation = -3409.302935 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.90468 -49.57278 -48.05264 -41.04136 -38.42758 -36.00748 -33.50105 -31.80212 -27.72093 -26.67384 -24.17298 -23.48015 -20.24301 -19.67099 -19.31249 -18.69624 -18.04774 -17.29951 -16.86924 -16.75178 -16.00024 -15.41982 -15.35863 -15.13720 -14.74857 -14.40923 -14.35341 -14.21670 -13.77287 -13.50947 -13.06255 -12.91800 -12.67525 -12.36013 -11.90271 -11.41576 -10.63749 -10.52618 -9.52745 -9.05699 -6.59642 0.24746 0.44493 1.25741 1.38892 1.48392 1.84331 2.05503 2.38289 2.67932 3.00971 3.14707 3.72763 3.90622 3.91479 4.16366 4.36897 4.67065 4.87688 5.17956 5.34388 5.65161 5.85699 6.10513 6.39147 6.51327 6.91908 7.99556 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.026349 B = 0.011559 C = 0.008893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.405067 B = 2421.751945 C = 3147.669144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.054 3.946 3 Si 0.955 3.045 4 H -0.237 1.237 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.429 4.429 8 H 0.075 0.925 9 C 0.032 3.968 10 C -0.183 4.183 11 C -0.135 4.135 12 C 0.162 3.838 13 F -0.137 7.137 14 N -0.537 5.537 15 C 0.209 3.791 16 O -0.316 6.316 17 C 0.411 3.589 18 F -0.215 7.215 19 F -0.214 7.214 20 H 0.304 0.696 21 H 0.145 0.855 22 H 0.164 0.836 23 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 -0.096 1.083 3.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.166 4.166 3 Si 0.776 3.224 4 H -0.161 1.161 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.457 4.457 8 H 0.093 0.907 9 C 0.026 3.974 10 C -0.207 4.207 11 C -0.155 4.155 12 C 0.012 3.988 13 F -0.117 7.117 14 N -0.263 5.263 15 C 0.026 3.974 16 O -0.228 6.228 17 C 0.321 3.679 18 F -0.197 7.197 19 F -0.196 7.196 20 H 0.115 0.885 21 H 0.162 0.838 22 H 0.182 0.818 23 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.948 -0.653 1.495 4.272 hybrid contribution 0.175 0.694 -0.300 0.776 sum 4.123 0.041 1.196 4.293 Atomic orbital electron populations 1.69681 1.09081 1.32592 1.32174 1.26861 0.95446 1.04029 0.90287 0.85630 0.79474 0.76338 0.80908 1.16120 1.19414 1.18337 1.19309 0.92605 0.96578 1.37232 0.90692 1.17888 0.93523 0.92318 0.93643 1.21029 0.95678 1.03312 1.00703 1.21239 0.93810 0.98685 1.01815 1.17306 0.79831 0.99084 1.02550 1.91445 1.32995 1.96302 1.90937 1.65850 1.15580 1.27789 1.17087 1.19346 0.87048 0.95509 0.95476 1.86675 1.37772 1.42176 1.56200 1.24088 0.78321 0.82691 0.82802 1.93023 1.88394 1.76586 1.61690 1.93026 1.63099 1.82346 1.81170 0.88452 0.83805 0.81806 0.75310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.02 13.93 21.83 0.30 -38.71 14 2 C 0.05 2.53 5.42 85.24 0.46 2.99 14 3 Si 0.96 36.76 24.53 68.60 1.68 38.44 14 4 H -0.24 -8.11 6.70 99.48 0.67 -7.44 14 5 H -0.27 -9.69 7.11 99.48 0.71 -8.99 14 6 H -0.26 -10.66 6.85 99.48 0.68 -9.97 14 7 C -0.43 -21.89 9.21 23.38 0.22 -21.67 14 8 H 0.07 4.13 7.91 -2.91 -0.02 4.11 14 9 C 0.03 1.56 5.12 -21.09 -0.11 1.45 14 10 C -0.18 -7.89 7.23 22.64 0.16 -7.72 14 11 C -0.13 -5.40 10.00 22.14 0.22 -5.18 14 12 C 0.16 7.35 8.41 84.82 0.71 8.06 14 13 F -0.14 -5.87 17.28 44.97 0.78 -5.09 14 14 N -0.54 -26.19 8.10 -307.88 -2.49 -28.68 14 15 C 0.21 10.24 7.23 85.45 0.62 10.86 14 16 O -0.32 -13.90 9.77 -86.80 -0.85 -14.75 14 17 C 0.41 14.15 6.06 113.37 0.69 14.84 14 18 F -0.21 -8.26 16.57 44.97 0.75 -7.52 14 19 F -0.21 -8.25 16.58 44.97 0.75 -7.51 14 20 H 0.30 12.86 8.30 -92.71 -0.77 12.09 14 21 H 0.14 5.66 4.79 -2.91 -0.01 5.65 14 22 H 0.16 5.13 8.06 -2.91 -0.02 5.11 14 23 H 0.23 4.67 8.14 -2.39 -0.02 4.65 14 Total: -1.00 -60.07 223.30 5.09 -54.98 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.21 Total: 5.21 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 2.97 Total: 3.63 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -2.19 Total: -67.40 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.85 Total: -14.75 kcal Atomic # 9 Polarization: -22.38 SS G_CDS: 2.27 Total: -20.11 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 1.68 Total: 38.44 kcal Total: -60.07 5.09 -54.98 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307522557.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.640 kcal (2) G-P(sol) polarization free energy of solvation -60.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds