Wall clock time and date at job start Mon Mar 30 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86796 * 120.00416 * 2 1 4 4 H 1.48504 * 109.47180 * 270.00113 * 3 2 1 5 5 H 1.48505 * 109.46768 * 29.99652 * 3 2 1 6 6 H 1.48495 * 109.47581 * 149.99983 * 3 2 1 7 7 C 1.39884 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00272 * 161.41140 * 7 2 1 9 9 C 1.41205 * 119.99967 * 341.41190 * 7 2 1 10 10 C 1.40696 * 120.62236 * 336.27070 * 9 7 2 11 11 N 1.31462 * 120.48822 * 180.02562 * 10 9 7 12 12 C 1.32632 * 121.97109 * 0.02562 * 11 10 9 13 13 O 1.35499 * 119.39047 * 179.97438 * 12 11 10 14 14 C 1.42901 * 117.00169 * 0.02562 * 13 12 11 15 15 F 1.39898 * 109.46957 * 299.99675 * 14 13 12 16 16 F 1.39901 * 109.47171 * 59.99775 * 14 13 12 17 17 C 1.39199 * 121.21440 * 359.97438 * 12 11 10 18 18 C 1.38039 * 119.36118 * 0.27586 * 17 12 11 19 19 F 1.35098 * 120.89821 * 179.72403 * 18 17 12 20 20 H 0.97001 * 119.99698 * 0.02562 * 1 2 3 21 21 H 1.08004 * 119.75279 * 0.04763 * 10 9 7 22 22 H 1.09001 * 109.47157 * 179.97438 * 14 13 12 23 23 H 1.08001 * 120.31709 * 180.02562 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.4906 2.0463 -1.4001 5 1 1.4405 2.6526 0.7000 6 1 3.5406 1.4401 0.7000 7 6 2.0084 -1.2115 0.0005 8 1 3.0461 -1.2361 -0.2976 9 6 1.3576 -2.4022 0.3909 10 6 0.2269 -2.3600 1.2272 11 7 -0.3767 -3.4703 1.5894 12 6 0.0463 -4.6621 1.1897 13 8 -0.6153 -5.7729 1.5952 14 6 -1.7486 -5.5795 2.4439 15 9 -1.3474 -4.9317 3.6171 16 9 -2.6996 -4.7966 1.7807 17 6 1.1573 -4.7928 0.3613 18 6 1.8342 -3.6611 -0.0467 19 9 2.9195 -3.7523 -0.8461 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1481 -1.4083 1.5738 22 1 -2.1849 -6.5467 2.6935 23 1 1.4889 -5.7705 0.0442 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307538370.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:43 Heat of formation + Delta-G solvation = -190.262558 kcal Electronic energy + Delta-G solvation = -16121.882433 eV Core-core repulsion = 12712.248189 eV Total energy + Delta-G solvation = -3409.634245 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.81444 -49.49702 -47.97287 -40.80401 -38.45627 -35.82243 -32.66997 -31.66987 -27.94255 -26.38653 -24.24716 -23.20702 -20.04895 -19.61228 -19.10574 -18.60877 -17.84692 -16.96829 -16.85412 -16.37959 -15.87319 -15.73086 -15.38793 -14.82358 -14.66667 -14.61571 -14.31811 -13.77540 -13.70154 -13.20447 -13.02166 -12.92214 -12.63117 -12.44772 -11.89237 -11.23870 -10.42445 -10.21321 -9.55001 -8.88962 -6.52234 0.47499 0.54658 1.39258 1.47404 1.56609 1.87613 2.15639 2.51971 2.84880 3.32092 3.61827 3.79148 3.91211 3.98980 4.27426 4.46862 4.71893 5.01168 5.09805 5.53435 5.61483 6.03008 6.17208 6.53314 6.57328 7.30871 8.10580 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.033031 B = 0.008550 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.477688 B = 3274.070954 C = 3882.922610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.038 3.962 3 Si 0.995 3.005 4 H -0.259 1.259 5 H -0.259 1.259 6 H -0.256 1.256 7 C -0.464 4.464 8 H 0.087 0.913 9 C 0.002 3.998 10 C 0.076 3.924 11 N -0.514 5.514 12 C 0.164 3.836 13 O -0.326 6.326 14 C 0.415 3.585 15 F -0.216 7.216 16 F -0.218 7.218 17 C -0.160 4.160 18 C 0.003 3.997 19 F -0.145 7.145 20 H 0.301 0.699 21 H 0.157 0.843 22 H 0.236 0.764 23 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 -4.381 2.900 5.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.180 4.180 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.183 1.183 6 H -0.180 1.180 7 C -0.492 4.492 8 H 0.105 0.895 9 C -0.004 4.004 10 C -0.087 4.087 11 N -0.234 5.234 12 C -0.009 4.009 13 O -0.241 6.241 14 C 0.326 3.674 15 F -0.198 7.198 16 F -0.200 7.200 17 C -0.181 4.181 18 C -0.023 4.023 19 F -0.124 7.124 20 H 0.112 0.888 21 H 0.173 0.827 22 H 0.251 0.749 23 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.444 -4.471 3.348 6.097 hybrid contribution 0.919 0.792 -0.677 1.389 sum -1.525 -3.679 2.672 4.796 Atomic orbital electron populations 1.69792 1.09185 1.32153 1.31989 1.26918 0.95570 1.04967 0.90573 0.85002 0.79051 0.74719 0.79879 1.18365 1.18329 1.18006 1.19698 0.98971 0.91659 1.38863 0.89467 1.18839 0.95057 0.92678 0.93788 1.22491 0.95175 0.94093 0.96971 1.66889 1.32372 0.98569 1.25529 1.18810 0.95037 0.84850 1.02227 1.86490 1.42730 1.29814 1.65041 1.24062 0.77430 0.92295 0.73646 1.93026 1.90999 1.85719 1.50072 1.93035 1.65452 1.79837 1.81649 1.20494 0.96519 0.98974 1.02132 1.17710 0.90341 0.94197 1.00051 1.91316 1.52346 1.96949 1.71779 0.88751 0.82653 0.74891 0.83066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.43 10.97 21.82 0.24 -39.19 14 2 C 0.04 1.78 5.14 85.23 0.44 2.22 14 3 Si 0.99 35.27 29.60 68.60 2.03 37.30 14 4 H -0.26 -8.88 7.11 99.48 0.71 -8.17 14 5 H -0.26 -8.61 7.11 99.48 0.71 -7.91 14 6 H -0.26 -9.00 7.11 99.48 0.71 -8.29 14 7 C -0.46 -23.95 8.83 23.40 0.21 -23.74 14 8 H 0.09 4.39 7.78 -2.91 -0.02 4.36 14 9 C 0.00 0.09 5.60 -21.13 -0.12 -0.03 14 10 C 0.08 4.04 9.90 85.35 0.84 4.89 14 11 N -0.51 -26.25 8.00 -306.70 -2.45 -28.71 14 12 C 0.16 7.71 7.20 84.80 0.61 8.32 14 13 O -0.33 -12.57 10.40 -88.01 -0.91 -13.48 14 14 C 0.42 13.07 6.05 113.37 0.69 13.76 14 15 F -0.22 -7.93 16.55 44.97 0.74 -7.19 14 16 F -0.22 -8.20 16.55 44.97 0.74 -7.46 14 17 C -0.16 -7.32 10.00 22.45 0.22 -7.09 14 18 C 0.00 0.17 7.38 23.04 0.17 0.34 14 19 F -0.14 -6.98 16.83 44.97 0.76 -6.22 14 20 H 0.30 13.05 8.30 -92.71 -0.77 12.28 14 21 H 0.16 8.40 6.14 -2.91 -0.02 8.39 14 22 H 0.24 3.77 8.14 -2.39 -0.02 3.75 14 23 H 0.15 5.85 8.06 -2.91 -0.02 5.82 14 Total: -1.00 -61.52 228.73 5.48 -56.04 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.27 Total: 10.24 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 3.06 Total: -1.33 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -2.21 Total: -67.90 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.91 Total: -13.48 kcal Atomic # 9 Polarization: -23.11 SS G_CDS: 2.25 Total: -20.87 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Total: -61.52 5.48 -56.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307538370.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.221 kcal (2) G-P(sol) polarization free energy of solvation -61.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds