Wall clock time and date at job start Mon Mar 30 2020 03:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30761 * 1 3 3 Si 1.86799 * 119.99734 * 2 1 4 4 H 1.48497 * 109.47257 * 270.00154 * 3 2 1 5 5 H 1.48498 * 109.47498 * 30.00494 * 3 2 1 6 6 H 1.48499 * 109.47162 * 150.00255 * 3 2 1 7 7 C 1.40049 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00114 * 197.12666 * 7 2 1 9 9 C 1.41210 * 119.99816 * 17.12554 * 7 2 1 10 10 C 1.41040 * 121.05651 * 23.42377 * 9 7 2 11 11 C 1.37812 * 118.91980 * 179.97438 * 10 9 7 12 12 F 1.35099 * 119.42828 * 179.97438 * 11 10 9 13 13 N 1.32283 * 121.14478 * 0.02911 * 11 10 9 14 14 C 1.31890 * 122.37313 * 359.67001 * 13 11 10 15 15 C 1.38499 * 120.91957 * 0.59630 * 14 13 11 16 16 O 1.35682 * 120.62444 * 179.72850 * 15 14 13 17 17 C 1.42900 * 117.00059 * 359.71499 * 16 15 14 18 18 F 1.39903 * 109.47182 * 60.00203 * 17 16 15 19 19 F 1.39897 * 109.47342 * 300.00403 * 17 16 15 20 20 H 0.97007 * 119.99972 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.53570 * 359.97438 * 10 9 7 22 22 H 1.08004 * 119.54233 * 180.31777 * 14 13 11 23 23 H 1.09005 * 109.47292 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4890 2.0465 -1.4000 5 1 1.4391 2.6527 0.7001 6 1 3.5391 1.4403 0.7000 7 6 2.0079 -1.2129 -0.0005 8 1 3.0519 -1.2337 0.2749 9 6 1.3487 -2.4085 -0.3612 10 6 0.1928 -2.3869 -1.1690 11 6 -0.4150 -3.5801 -1.4947 12 9 -1.5231 -3.5714 -2.2674 13 7 0.0672 -4.7338 -1.0630 14 6 1.1476 -4.8103 -0.3104 15 6 1.8279 -3.6676 0.0764 16 8 2.9356 -3.7529 0.8552 17 6 3.3504 -5.0615 1.2521 18 9 3.6305 -5.8269 0.1150 19 9 2.3275 -5.6727 1.9852 20 1 -0.4850 0.8401 0.0004 21 1 -0.2095 -1.4505 -1.5264 22 1 1.5044 -5.7773 0.0124 23 1 4.2453 -4.9873 1.8701 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307553214.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:38 Heat of formation + Delta-G solvation = -185.798604 kcal Electronic energy + Delta-G solvation = -16245.851298 eV Core-core repulsion = 12836.410625 eV Total energy + Delta-G solvation = -3409.440673 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.14338 -49.71131 -48.15589 -40.78661 -38.42109 -36.25136 -32.76463 -30.74192 -28.21009 -26.89013 -24.09391 -23.34456 -20.03367 -19.77780 -19.19544 -18.71540 -17.94490 -17.36328 -16.77245 -16.58796 -16.29682 -15.33425 -15.15395 -14.77362 -14.73501 -14.50461 -14.37379 -14.05539 -13.70297 -13.38806 -13.05464 -13.01153 -12.68188 -12.41232 -11.96394 -11.35577 -10.35587 -10.19439 -9.31330 -8.84968 -6.70535 0.42441 0.63379 1.40924 1.52629 1.57191 1.99647 2.15358 2.51495 2.70574 3.05865 3.28577 3.69189 3.87529 3.91667 4.26430 4.47940 4.90192 5.01229 5.08727 5.34086 5.87347 5.93949 6.33361 6.51233 6.61391 7.13450 8.08126 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.022189 B = 0.011087 C = 0.007889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.589031 B = 2524.789897 C = 3548.271666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.035 3.965 3 Si 0.999 3.001 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.250 1.250 7 C -0.442 4.442 8 H 0.101 0.899 9 C 0.111 3.889 10 C -0.242 4.242 11 C 0.265 3.735 12 F -0.139 7.139 13 N -0.601 5.601 14 C 0.072 3.928 15 C -0.070 4.070 16 O -0.316 6.316 17 C 0.399 3.601 18 F -0.215 7.215 19 F -0.216 7.216 20 H 0.301 0.699 21 H 0.138 0.862 22 H 0.158 0.842 23 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.487 -0.634 3.320 8.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.185 4.185 3 Si 0.818 3.182 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.173 1.173 7 C -0.471 4.471 8 H 0.119 0.881 9 C 0.103 3.897 10 C -0.267 4.267 11 C 0.117 3.883 12 F -0.118 7.118 13 N -0.323 5.323 14 C -0.081 4.081 15 C -0.118 4.118 16 O -0.232 6.232 17 C 0.309 3.691 18 F -0.197 7.197 19 F -0.198 7.198 20 H 0.112 0.888 21 H 0.155 0.845 22 H 0.175 0.825 23 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 6.880 -1.157 3.132 7.648 hybrid contribution -0.125 0.769 -0.091 0.784 sum 6.756 -0.388 3.041 7.419 Atomic orbital electron populations 1.69793 1.09573 1.32210 1.30632 1.27089 0.95561 1.05363 0.90496 0.84933 0.79121 0.74260 0.79933 1.18337 1.18901 1.17318 1.19902 0.98836 0.90744 1.37615 0.88139 1.17421 0.91074 0.91367 0.89847 1.21644 1.01975 0.96603 1.06450 1.18063 0.85455 0.90971 0.93845 1.91433 1.50457 1.97189 1.72771 1.66566 1.17296 1.28047 1.20429 1.22338 0.91952 0.96931 0.96833 1.19960 0.93338 0.95451 1.03048 1.86427 1.42399 1.28835 1.65575 1.24354 0.90118 0.74429 0.80202 1.93039 1.93675 1.77318 1.55672 1.93039 1.65074 1.84166 1.77569 0.88756 0.84458 0.82542 0.74842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.31 10.91 21.84 0.24 -38.08 14 2 C 0.03 1.58 5.20 85.29 0.44 2.02 14 3 Si 1.00 33.65 29.59 68.60 2.03 35.68 14 4 H -0.26 -8.52 7.11 99.48 0.71 -7.81 14 5 H -0.26 -8.47 7.11 99.48 0.71 -7.76 14 6 H -0.25 -8.07 7.11 99.48 0.71 -7.36 14 7 C -0.44 -21.81 8.81 23.44 0.21 -21.61 14 8 H 0.10 4.70 7.70 -2.91 -0.02 4.67 14 9 C 0.11 5.83 5.62 -21.02 -0.12 5.72 14 10 C -0.24 -12.95 8.76 22.86 0.20 -12.75 14 11 C 0.27 14.05 8.38 84.52 0.71 14.76 14 12 F -0.14 -6.96 17.28 44.97 0.78 -6.18 14 13 N -0.60 -31.45 10.34 -197.06 -2.04 -33.49 14 14 C 0.07 3.47 9.45 84.75 0.80 4.27 14 15 C -0.07 -3.41 6.54 23.17 0.15 -3.26 14 16 O -0.32 -12.72 9.83 -90.00 -0.88 -13.60 14 17 C 0.40 11.51 5.98 113.37 0.68 12.19 14 18 F -0.22 -6.80 15.59 44.97 0.70 -6.10 14 19 F -0.22 -7.03 15.63 44.97 0.70 -6.33 14 20 H 0.30 12.79 8.29 -92.70 -0.77 12.02 14 21 H 0.14 7.39 6.18 -2.91 -0.02 7.37 14 22 H 0.16 6.75 5.12 -2.91 -0.01 6.74 14 23 H 0.24 3.55 8.14 -2.38 -0.02 3.53 14 Total: -1.00 -61.23 224.65 5.87 -55.36 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 1.28 Total: 11.39 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 3.07 Total: 1.34 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -1.80 Total: -71.56 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.88 Total: -13.60 kcal Atomic # 9 Polarization: -20.78 SS G_CDS: 2.18 Total: -18.60 kcal Atomic # 14 Polarization: 33.65 SS G_CDS: 2.03 Total: 35.68 kcal Total: -61.23 5.87 -55.36 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307553214.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.444 kcal (2) G-P(sol) polarization free energy of solvation -61.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds