Wall clock time and date at job start Mon Mar 30 2020 03:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86802 * 119.99900 * 2 1 4 4 H 1.48498 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46849 * 299.99290 * 3 2 1 6 6 H 1.48500 * 109.47208 * 59.99278 * 3 2 1 7 7 C 1.39934 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00454 * 155.72218 * 7 2 1 9 9 C 1.41213 * 120.00111 * 335.72291 * 7 2 1 10 10 C 1.41755 * 120.70983 * 319.56015 * 9 7 2 11 11 O 1.35519 * 120.98045 * 0.02562 * 10 9 7 12 12 C 1.38856 * 118.04887 * 180.02562 * 10 9 7 13 13 C 1.38193 * 119.34881 * 359.97438 * 12 10 9 14 14 N 1.32204 * 121.41950 * 359.97438 * 13 12 10 15 15 C 1.31490 * 122.15762 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.77614 * 180.27080 * 15 14 13 17 17 F 1.39898 * 109.47136 * 242.68756 * 16 15 14 18 18 F 1.39903 * 109.46741 * 2.69003 * 16 15 14 19 19 F 1.39897 * 109.46779 * 122.68569 * 16 15 14 20 20 H 0.96999 * 120.00401 * 0.02562 * 1 2 3 21 21 H 0.96695 * 114.00421 * 94.84039 * 11 10 9 22 22 H 1.07999 * 120.33085 * 179.97438 * 12 10 9 23 23 H 1.08005 * 119.29229 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7026 1.3464 0.0006 5 1 1.8839 2.3963 -1.2126 6 1 1.8837 2.3966 1.2124 7 6 2.0084 -1.2118 0.0005 8 1 3.0167 -1.2534 -0.3840 9 6 1.3960 -2.3805 0.5039 10 6 0.5958 -2.3325 1.6729 11 8 0.3979 -1.1669 2.3354 12 6 0.0205 -3.5147 2.1195 13 6 0.2440 -4.6840 1.4177 14 7 0.9940 -4.7018 0.3291 15 6 1.5661 -3.6168 -0.1444 16 6 2.4054 -3.6975 -1.3935 17 9 3.7252 -3.3447 -1.0921 18 9 2.3743 -5.0041 -1.8926 19 9 1.8958 -2.8187 -2.3553 20 1 -0.4851 0.8400 -0.0004 21 1 -0.4132 -0.7044 2.0842 22 1 -0.5956 -3.5205 3.0064 23 1 -0.2042 -5.6030 1.7656 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307646706.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:45 Heat of formation + Delta-G solvation = -189.552975 kcal Electronic energy + Delta-G solvation = -16765.060099 eV Core-core repulsion = 13355.456624 eV Total energy + Delta-G solvation = -3409.603475 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.89390 -48.42258 -48.36079 -40.74597 -37.86916 -35.67604 -32.71947 -31.92093 -28.21442 -26.55189 -23.69754 -23.01111 -19.89033 -19.37516 -19.27529 -19.23135 -17.80169 -17.35270 -16.74601 -15.99921 -15.52019 -15.31071 -15.23381 -14.85799 -14.69864 -14.58795 -14.55970 -14.17739 -13.98254 -13.42336 -13.23831 -12.84770 -12.77679 -12.10858 -11.28378 -11.10876 -10.35972 -10.07029 -9.68218 -8.91174 -6.70582 0.25295 0.71192 1.38042 1.44155 1.52206 1.91893 2.16421 2.55165 2.94626 3.01431 3.33154 3.72664 3.85344 4.30458 4.40444 4.66315 4.84839 5.08538 5.22273 5.50001 5.75323 6.09467 6.36517 6.60272 7.10595 7.27885 8.11280 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.024484 B = 0.014299 C = 0.010029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.344459 B = 1957.724513 C = 2791.317045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.062 3.938 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.257 1.257 7 C -0.472 4.472 8 H 0.085 0.915 9 C 0.058 3.942 10 C 0.064 3.936 11 O -0.487 6.487 12 C -0.147 4.147 13 C -0.004 4.004 14 N -0.451 5.451 15 C -0.103 4.103 16 C 0.540 3.460 17 F -0.186 7.186 18 F -0.180 7.180 19 F -0.179 7.179 20 H 0.301 0.699 21 H 0.377 0.623 22 H 0.153 0.847 23 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 0.151 1.382 1.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.156 4.156 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.181 1.181 7 C -0.499 4.499 8 H 0.103 0.897 9 C 0.052 3.948 10 C 0.010 3.990 11 O -0.299 6.299 12 C -0.168 4.168 13 C -0.165 4.165 14 N -0.161 5.161 15 C -0.242 4.242 16 C 0.485 3.515 17 F -0.167 7.167 18 F -0.162 7.162 19 F -0.161 7.161 20 H 0.112 0.888 21 H 0.237 0.763 22 H 0.171 0.829 23 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.101 -0.605 1.155 1.307 hybrid contribution -0.182 1.514 -0.097 1.528 sum -0.283 0.909 1.058 1.423 Atomic orbital electron populations 1.69663 1.08939 1.32048 1.32318 1.26477 0.95359 1.03842 0.89943 0.85215 0.79514 0.76206 0.79293 1.18803 1.18755 1.18090 1.19691 1.01119 0.92970 1.36143 0.89721 1.18595 0.92359 0.92969 0.90837 1.19098 1.01973 0.86319 0.91572 1.84569 1.47802 1.34523 1.63002 1.22490 0.99637 0.93099 1.01525 1.22345 1.02034 0.98596 0.93514 1.66529 1.06332 1.29899 1.13295 1.20762 1.11332 0.92460 0.99611 1.17656 0.77642 0.72643 0.83530 1.93108 1.38271 1.91997 1.93362 1.93101 1.96443 1.37636 1.88974 1.93143 1.87109 1.69905 1.65932 0.88776 0.76291 0.82898 0.80399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.89 10.93 21.83 0.24 -36.65 14 2 C 0.06 2.89 4.32 85.25 0.37 3.25 14 3 Si 0.98 36.26 29.62 68.60 2.03 38.29 14 4 H -0.26 -10.04 7.11 99.48 0.71 -9.34 14 5 H -0.26 -9.27 7.11 99.48 0.71 -8.56 14 6 H -0.26 -9.04 7.11 99.48 0.71 -8.33 14 7 C -0.47 -24.19 7.27 23.41 0.17 -24.02 14 8 H 0.08 4.39 6.70 -2.91 -0.02 4.37 14 9 C 0.06 2.99 5.31 -21.10 -0.11 2.88 14 10 C 0.06 3.03 6.30 23.29 0.15 3.18 14 11 O -0.49 -21.85 11.74 -88.21 -1.04 -22.89 14 12 C -0.15 -5.92 10.05 22.41 0.23 -5.69 14 13 C 0.00 -0.17 11.16 84.63 0.94 0.78 14 14 N -0.45 -21.22 9.71 -182.04 -1.77 -22.99 14 15 C -0.10 -5.17 6.33 43.19 0.27 -4.89 14 16 C 0.54 25.62 2.89 71.24 0.21 25.83 14 17 F -0.19 -8.57 15.96 44.97 0.72 -7.85 14 18 F -0.18 -8.05 16.86 44.97 0.76 -7.29 14 19 F -0.18 -8.64 16.37 44.97 0.74 -7.91 14 20 H 0.30 12.12 8.30 -92.71 -0.77 11.35 14 21 H 0.38 15.50 7.45 -74.06 -0.55 14.95 14 22 H 0.15 4.90 8.06 -2.91 -0.02 4.88 14 23 H 0.18 5.55 8.06 -2.91 -0.02 5.52 14 Total: -1.00 -55.76 224.71 4.63 -51.13 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.73 Total: 14.83 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 2.22 Total: 1.32 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -1.53 Total: -59.64 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -1.04 Total: -22.89 kcal Atomic # 9 Polarization: -25.25 SS G_CDS: 2.21 Total: -23.04 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Total: -55.76 4.63 -51.13 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307646706.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.423 kcal (2) G-P(sol) polarization free energy of solvation -55.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds