Wall clock time and date at job start Mon Mar 30 2020 03:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30777 * 1 3 3 Si 1.86806 * 119.99996 * 2 1 4 4 H 1.48494 * 109.47012 * 274.98031 * 3 2 1 5 5 H 1.48496 * 109.46854 * 34.98066 * 3 2 1 6 6 H 1.48498 * 109.47209 * 154.98063 * 3 2 1 7 7 C 1.39999 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00237 * 186.36610 * 7 2 1 9 9 C 1.41118 * 119.99895 * 6.36845 * 7 2 1 10 10 C 1.40725 * 119.73710 * 173.76989 * 9 7 2 11 11 C 1.36945 * 119.25688 * 179.97438 * 10 9 7 12 12 C 1.39450 * 118.69754 * 0.02562 * 11 10 9 13 13 O 1.35708 * 120.29160 * 179.97438 * 12 11 10 14 14 C 1.42897 * 117.00339 * 0.02562 * 13 12 11 15 15 F 1.39902 * 109.47118 * 300.00369 * 14 13 12 16 16 F 1.39898 * 109.47172 * 60.00365 * 14 13 12 17 17 C 1.39887 * 119.41160 * 359.97438 * 12 11 10 18 18 F 1.35099 * 119.64697 * 180.02562 * 17 12 11 19 19 N 1.31491 * 120.70409 * 0.28495 * 17 12 11 20 20 H 0.97000 * 120.00254 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.37318 * 0.02562 * 10 9 7 22 22 H 1.08006 * 120.65475 * 179.97438 * 11 10 9 23 23 H 1.09001 * 109.47068 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.3840 2.1072 -1.3947 5 1 1.4958 2.6200 0.8027 6 1 3.5880 1.4121 0.5921 7 6 2.0078 -1.2124 0.0005 8 1 3.0829 -1.2152 0.1043 9 6 1.3088 -2.4308 -0.1345 10 6 2.0246 -3.6354 -0.2654 11 6 1.3363 -4.8121 -0.3953 12 6 -0.0578 -4.7762 -0.3939 13 8 -0.7722 -5.9230 -0.5211 14 6 -0.0313 -7.1378 -0.6525 15 9 0.7770 -7.0700 -1.7924 16 9 0.7718 -7.3189 0.4786 17 6 -0.7131 -3.5476 -0.2602 18 9 -2.0635 -3.5073 -0.2577 19 7 -0.0289 -2.4310 -0.1421 20 1 -0.4850 0.8400 -0.0004 21 1 3.1046 -3.6319 -0.2627 22 1 1.8627 -5.7496 -0.4977 23 1 -0.7217 -7.9760 -0.7463 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307669934.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:22 Heat of formation + Delta-G solvation = -156.203075 kcal Electronic energy + Delta-G solvation = -16158.586192 eV Core-core repulsion = 12750.428877 eV Total energy + Delta-G solvation = -3408.157315 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.85562 -47.68175 -46.87074 -38.78718 -36.99192 -33.61701 -30.74453 -29.65353 -26.56638 -24.62667 -22.27686 -21.55711 -18.40008 -18.25203 -17.42479 -17.05489 -16.53563 -15.42249 -14.91369 -14.86548 -14.65918 -13.80151 -13.59139 -13.27232 -12.91914 -12.87086 -12.70780 -12.23100 -11.76298 -11.64630 -11.23449 -11.09528 -11.07119 -10.81289 -10.24993 -9.39684 -8.47847 -8.09561 -7.47502 -6.66088 -4.71815 2.39649 2.64124 3.00153 3.03420 3.04457 3.32059 3.80973 3.95428 4.45726 4.76175 5.03116 5.09995 5.52670 5.76566 6.03376 6.35169 6.79299 6.92192 7.09171 7.16079 7.42403 7.83605 8.01300 8.39437 8.62906 9.59771 10.08150 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.046821 B = 0.007565 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.878926 B = 3700.472615 C = 4120.786980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.062 3.938 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.413 4.413 8 H 0.094 0.906 9 C 0.262 3.738 10 C -0.249 4.249 11 C -0.087 4.087 12 C -0.143 4.143 13 O -0.319 6.319 14 C 0.410 3.590 15 F -0.209 7.209 16 F -0.209 7.209 17 C 0.334 3.666 18 F -0.132 7.132 19 N -0.490 5.490 20 H 0.279 0.721 21 H 0.114 0.886 22 H 0.118 0.882 23 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 -6.915 -0.858 7.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.165 4.165 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.443 4.443 8 H 0.112 0.888 9 C 0.138 3.862 10 C -0.272 4.272 11 C -0.111 4.111 12 C -0.191 4.191 13 O -0.237 6.237 14 C 0.318 3.682 15 F -0.191 7.191 16 F -0.191 7.191 17 C 0.172 3.828 18 F -0.112 7.112 19 N -0.210 5.210 20 H 0.091 0.909 21 H 0.132 0.868 22 H 0.136 0.864 23 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.294 -5.993 -0.770 6.049 hybrid contribution 0.841 -0.241 -0.124 0.884 sum 1.135 -6.234 -0.895 6.399 Atomic orbital electron populations 1.70119 1.07393 1.28658 1.26306 1.26191 0.95020 1.01636 0.93654 0.86169 0.80436 0.80190 0.79297 1.19227 1.19876 1.18256 1.19680 0.95092 0.89139 1.40408 0.88782 1.18244 0.85940 0.92553 0.89489 1.21401 0.99589 0.92540 1.13642 1.20871 0.91239 0.99137 0.99859 1.19108 0.91235 0.84217 1.24527 1.86412 1.34561 1.12905 1.89813 1.23120 0.82365 0.90741 0.71947 1.93050 1.76660 1.96810 1.52542 1.93049 1.76922 1.95519 1.53567 1.17989 0.78184 0.87758 0.98840 1.91477 1.28808 1.97069 1.93799 1.68372 1.09035 1.22267 1.21359 0.90946 0.86824 0.86402 0.81767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.45 11.48 55.55 0.64 -17.82 14 2 C 0.06 1.52 5.49 -17.34 -0.10 1.43 14 3 Si 0.92 17.73 29.56 -169.99 -5.03 12.71 14 4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 14 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 14 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 14 7 C -0.41 -10.53 9.12 -37.83 -0.34 -10.87 14 8 H 0.09 2.18 7.85 -52.48 -0.41 1.77 14 9 C 0.26 7.02 6.54 -84.99 -0.56 6.46 14 10 C -0.25 -5.95 9.77 -39.11 -0.38 -6.33 14 11 C -0.09 -1.99 8.27 -39.60 -0.33 -2.32 14 12 C -0.14 -3.42 6.54 -38.51 -0.25 -3.67 14 13 O -0.32 -6.56 10.30 -18.83 -0.19 -6.76 14 14 C 0.41 6.36 5.98 101.05 0.60 6.96 14 15 F -0.21 -3.49 15.60 2.25 0.04 -3.46 14 16 F -0.21 -3.49 15.60 2.25 0.04 -3.45 14 17 C 0.33 8.83 8.44 -17.08 -0.14 8.69 14 18 F -0.13 -3.36 17.14 2.25 0.04 -3.33 14 19 N -0.49 -13.83 7.89 -11.29 -0.09 -13.92 14 20 H 0.28 6.58 8.30 -40.82 -0.34 6.24 14 21 H 0.11 2.42 8.06 -52.49 -0.42 1.99 14 22 H 0.12 2.42 5.22 -52.48 -0.27 2.15 14 23 H 0.17 1.59 8.14 -51.93 -0.42 1.17 14 LS Contribution 226.61 15.07 3.41 3.41 Total: -1.00 -29.64 226.61 -3.31 -32.95 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -0.67 Total: -0.69 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.50 Total: 0.34 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.55 Total: -31.73 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.19 Total: -6.76 kcal Atomic # 9 Polarization: -10.35 SS G_CDS: 0.11 Total: -10.24 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -29.64 -3.31 -32.95 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307669934.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.248 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds