Wall clock time and date at job start Mon Mar 30 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31397 * 1 3 3 Si 1.86800 * 119.99774 * 2 1 4 4 H 1.48501 * 109.47055 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47125 * 299.99791 * 3 2 1 6 6 H 1.48495 * 109.47483 * 59.99940 * 3 2 1 7 7 C 1.38839 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99506 * 180.27173 * 7 2 1 9 9 O 1.34814 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.34818 * 116.99691 * 179.97438 * 9 7 2 11 11 O 1.21593 * 120.00182 * 359.97438 * 10 9 7 12 12 C 1.46972 * 119.99748 * 180.02562 * 10 9 7 13 13 N 1.30713 * 125.53550 * 359.68817 * 12 10 9 14 14 C 1.30694 * 115.88609 * 179.84998 * 13 12 10 15 15 Cl 1.73597 * 122.11842 * 180.23307 * 14 13 12 16 16 C 1.34404 * 115.75623 * 0.44422 * 14 13 12 17 17 S 1.71055 * 109.10366 * 359.76830 * 16 14 13 18 18 H 0.97005 * 120.00187 * 0.02562 * 1 2 3 19 19 H 1.08003 * 125.44128 * 179.79383 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.7079 1.3465 0.0006 5 1 1.8892 2.3964 -1.2125 6 1 1.8892 2.3965 1.2124 7 6 2.0082 -1.2024 0.0005 8 1 3.0882 -1.2023 0.0050 9 8 1.3341 -2.3699 0.0005 10 6 2.0685 -3.5005 0.0005 11 8 3.2827 -3.4369 0.0001 12 6 1.4013 -4.8101 0.0000 13 7 0.1086 -5.0041 0.0052 14 6 -0.2811 -6.2516 0.0005 15 17 -1.9597 -6.6941 0.0003 16 6 0.7001 -7.1701 0.0002 17 16 2.2134 -6.3726 -0.0001 18 1 -0.4851 0.8401 -0.0004 19 1 0.5561 -8.2404 -0.0002 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307709127.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:45 Heat of formation + Delta-G solvation = -33.964238 kcal Electronic energy + Delta-G solvation = -11592.189504 eV Core-core repulsion = 9035.676531 eV Total energy + Delta-G solvation = -2556.512974 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 232.970 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.70933 -38.73531 -36.37541 -35.34013 -32.43702 -30.35561 -26.73412 -25.15854 -21.94415 -19.90845 -18.20500 -17.86814 -16.82425 -15.60226 -15.23940 -14.75835 -14.48292 -14.07559 -13.43889 -12.73630 -11.93003 -11.81782 -11.64934 -11.29892 -10.92242 -10.62672 -10.51845 -10.07149 -9.81855 -9.57491 -9.36979 -8.81029 -8.56723 -6.66837 -4.24339 0.36132 1.20070 1.43749 2.43144 2.46446 3.05593 3.08815 3.17173 3.74057 3.76703 4.23849 4.93781 4.95068 5.16222 5.51790 6.47545 7.14567 7.57368 7.69026 8.44342 8.77337 9.58248 10.48064 Molecular weight = 232.97amu Principal moments of inertia in cm(-1) A = 0.038387 B = 0.007206 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.241106 B = 3884.544455 C = 4603.943414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.042 3.958 3 Si 0.952 3.048 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.363 4.363 8 H 0.107 0.893 9 O -0.167 6.167 10 C 0.448 3.552 11 O -0.547 6.547 12 C 0.064 3.936 13 N -0.418 5.418 14 C 0.119 3.881 15 Cl -0.018 7.018 16 C -0.298 4.298 17 S 0.252 5.748 18 H 0.277 0.723 19 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.452 -11.044 -0.008 11.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.167 4.167 3 Si 0.775 3.225 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.441 4.441 8 H 0.124 0.876 9 O -0.070 6.070 10 C 0.294 3.706 11 O -0.446 6.446 12 C -0.209 4.209 13 N -0.137 5.137 14 C -0.047 4.047 15 Cl 0.010 6.990 16 C -0.441 4.441 17 S 0.508 5.492 18 H 0.087 0.913 19 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.120 -10.774 -0.001 10.832 hybrid contribution -1.003 0.342 0.002 1.060 sum 0.117 -10.432 0.002 10.432 Atomic orbital electron populations 1.70029 1.06345 1.28600 1.41549 1.25595 0.95950 0.99395 0.95712 0.85480 0.79577 0.78995 0.78476 1.18451 1.19746 1.19758 1.21681 0.93032 0.79445 1.49948 0.87578 1.83997 1.38773 1.12747 1.71532 1.18838 0.84927 0.83361 0.83508 1.90728 1.13466 1.86709 1.53745 1.26735 0.90074 0.97607 1.06472 1.66441 1.13733 1.19630 1.13877 1.20427 0.88801 0.88333 1.07114 1.98373 1.12596 1.90985 1.97091 1.26399 0.97021 1.05984 1.14666 1.83874 1.05044 0.96765 1.63517 0.91306 0.79460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.72 13.67 55.49 0.76 -22.96 13 2 C 0.04 1.14 5.50 -17.51 -0.10 1.04 13 3 Si 0.95 20.16 29.55 -169.99 -5.02 15.14 13 4 H -0.26 -5.40 7.11 56.52 0.40 -4.99 13 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 13 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 13 7 C -0.36 -10.44 9.65 30.95 0.30 -10.14 13 8 H 0.11 2.99 6.86 -52.49 -0.36 2.63 13 9 O -0.17 -4.89 9.73 -21.76 -0.21 -5.10 13 10 C 0.45 11.53 7.88 34.27 0.27 11.80 13 11 O -0.55 -14.46 16.19 -19.34 -0.31 -14.77 13 12 C 0.06 1.38 7.47 -14.49 -0.11 1.27 13 13 N -0.42 -9.01 10.63 -8.66 -0.09 -9.10 13 14 C 0.12 2.06 7.22 -19.39 -0.14 1.92 13 15 Cl -0.02 -0.28 29.20 -51.86 -1.51 -1.79 13 16 C -0.30 -4.14 10.93 29.38 0.32 -3.82 13 17 S 0.25 3.86 23.02 -107.50 -2.47 1.39 13 18 H 0.28 7.11 8.31 -40.82 -0.34 6.77 13 19 H 0.19 1.85 8.06 -52.48 -0.42 1.43 13 LS Contribution 225.18 15.07 3.39 3.39 Total: -1.00 -31.38 225.18 -4.85 -36.23 By element: Atomic # 1 Polarization: -4.59 SS G_CDS: 0.08 Total: -4.51 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 0.55 Total: 2.08 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.67 Total: -32.06 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.52 Total: -19.87 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -2.47 Total: 1.39 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.51 Total: -1.79 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -31.38 -4.85 -36.23 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307709127.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.269 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds