Wall clock time and date at job start Mon Mar 30 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31397 * 1 3 3 Si 1.86800 * 119.99774 * 2 1 4 4 H 1.48501 * 109.47055 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47125 * 299.99791 * 3 2 1 6 6 H 1.48495 * 109.47483 * 59.99940 * 3 2 1 7 7 C 1.38839 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99506 * 180.27173 * 7 2 1 9 9 O 1.34814 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.34818 * 116.99691 * 179.97438 * 9 7 2 11 11 O 1.21593 * 120.00182 * 359.97438 * 10 9 7 12 12 C 1.46972 * 119.99748 * 180.02562 * 10 9 7 13 13 N 1.30713 * 125.53550 * 359.68817 * 12 10 9 14 14 C 1.30694 * 115.88609 * 179.84998 * 13 12 10 15 15 Cl 1.73597 * 122.11842 * 180.23307 * 14 13 12 16 16 C 1.34404 * 115.75623 * 0.44422 * 14 13 12 17 17 S 1.71055 * 109.10366 * 359.76830 * 16 14 13 18 18 H 0.97005 * 120.00187 * 0.02562 * 1 2 3 19 19 H 1.08003 * 125.44128 * 179.79383 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.7079 1.3465 0.0006 5 1 1.8892 2.3964 -1.2125 6 1 1.8892 2.3965 1.2124 7 6 2.0082 -1.2024 0.0005 8 1 3.0882 -1.2023 0.0050 9 8 1.3341 -2.3699 0.0005 10 6 2.0685 -3.5005 0.0005 11 8 3.2827 -3.4369 0.0001 12 6 1.4013 -4.8101 0.0000 13 7 0.1086 -5.0041 0.0052 14 6 -0.2811 -6.2516 0.0005 15 17 -1.9597 -6.6941 0.0003 16 6 0.7001 -7.1701 0.0002 17 16 2.2134 -6.3726 -0.0001 18 1 -0.4851 0.8401 -0.0004 19 1 0.5561 -8.2404 -0.0002 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307709127.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:45 Heat of formation + Delta-G solvation = -56.568174 kcal Electronic energy + Delta-G solvation = -11593.169685 eV Core-core repulsion = 9035.676531 eV Total energy + Delta-G solvation = -2557.493154 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 232.970 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.39186 -40.52713 -37.64000 -37.38146 -34.43697 -31.80000 -28.46063 -27.00784 -23.61851 -21.54919 -20.01337 -19.55241 -18.55750 -17.26244 -17.03736 -16.45412 -16.22362 -15.76073 -14.79387 -14.63055 -13.68225 -13.33489 -13.19429 -12.76756 -12.44752 -12.24296 -12.14453 -12.04425 -11.64749 -11.06062 -10.93722 -10.78806 -9.92443 -8.63508 -6.41037 -1.05913 -0.17701 0.07770 0.93016 1.12796 1.34917 1.42084 1.55523 1.91964 2.06498 2.51749 2.92898 3.48210 3.91505 4.23716 4.63752 5.06505 5.67722 6.13245 6.44097 6.77756 7.57657 8.56435 Molecular weight = 232.97amu Principal moments of inertia in cm(-1) A = 0.038387 B = 0.007206 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.241106 B = 3884.544455 C = 4603.943414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C -0.003 4.003 3 Si 1.027 2.973 4 H -0.256 1.256 5 H -0.258 1.258 6 H -0.258 1.258 7 C -0.419 4.419 8 H 0.097 0.903 9 O -0.210 6.210 10 C 0.461 3.539 11 O -0.560 6.560 12 C -0.016 4.016 13 N -0.443 5.443 14 C 0.081 3.919 15 Cl -0.004 7.004 16 C -0.246 4.246 17 S 0.372 5.628 18 H 0.284 0.716 19 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.226 -13.694 -0.010 13.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.205 4.205 3 Si 0.844 3.156 4 H -0.180 1.180 5 H -0.182 1.182 6 H -0.183 1.183 7 C -0.495 4.495 8 H 0.114 0.886 9 O -0.116 6.116 10 C 0.307 3.693 11 O -0.459 6.459 12 C -0.286 4.286 13 N -0.164 5.164 14 C -0.084 4.084 15 Cl 0.024 6.976 16 C -0.388 4.388 17 S 0.626 5.374 18 H 0.093 0.907 19 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 1.904 -13.407 -0.003 13.541 hybrid contribution -1.212 0.550 0.004 1.331 sum 0.692 -12.856 0.001 12.875 Atomic orbital electron populations 1.70121 1.08167 1.29974 1.44290 1.26826 0.96883 1.02777 0.94026 0.84450 0.78047 0.73694 0.79381 1.17970 1.18246 1.18268 1.21844 0.92872 0.80432 1.54348 0.88554 1.84025 1.39774 1.13813 1.73960 1.19671 0.85064 0.84454 0.80083 1.90671 1.14288 1.87611 1.53327 1.26150 0.91438 0.98372 1.12680 1.66298 1.14699 1.22747 1.12662 1.20616 0.90439 0.87671 1.09716 1.98377 1.11492 1.90515 1.97205 1.27229 0.95752 1.08152 1.07688 1.83513 1.03571 0.91328 1.59016 0.90687 0.74075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.58 13.67 21.64 0.30 -53.28 13 2 C 0.00 -0.16 5.50 84.90 0.47 0.31 13 3 Si 1.03 42.67 29.55 68.60 2.03 44.70 13 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 13 5 H -0.26 -10.01 7.11 99.48 0.71 -9.30 13 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 13 7 C -0.42 -25.59 9.65 67.96 0.66 -24.93 13 8 H 0.10 5.79 6.86 -2.91 -0.02 5.77 13 9 O -0.21 -13.08 9.73 10.86 0.11 -12.98 13 10 C 0.46 24.62 7.88 70.11 0.55 25.17 13 11 O -0.56 -30.35 16.19 19.53 0.32 -30.04 13 12 C -0.02 -0.68 7.47 87.15 0.65 -0.02 13 13 N -0.44 -18.94 10.63 -181.31 -1.93 -20.86 13 14 C 0.08 2.57 7.22 83.98 0.61 3.18 13 15 Cl 0.00 -0.11 29.20 -2.72 -0.08 -0.19 13 16 C -0.25 -5.49 10.93 66.94 0.73 -4.76 13 17 S 0.37 9.82 23.02 -56.49 -1.30 8.52 13 18 H 0.28 15.28 8.31 -92.70 -0.77 14.51 13 19 H 0.24 2.78 8.06 -2.91 -0.02 2.76 13 Total: -1.00 -74.72 225.18 4.41 -70.31 By element: Atomic # 1 Polarization: -6.43 SS G_CDS: 1.31 Total: -5.12 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 3.66 Total: -1.06 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -1.63 Total: -74.14 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: 0.42 Total: -43.01 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: 9.82 SS G_CDS: -1.30 Total: 8.52 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.08 Total: -0.19 kcal Total: -74.72 4.41 -70.31 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307709127.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.746 kcal (2) G-P(sol) polarization free energy of solvation -74.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds