Wall clock time and date at job start Mon Mar 30 2020 03:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00307 * 2 1 4 4 H 1.48498 * 109.47361 * 269.99498 * 3 2 1 5 5 H 1.48497 * 109.47059 * 29.99991 * 3 2 1 6 6 H 1.48507 * 109.47001 * 149.99789 * 3 2 1 7 7 C 1.38806 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.47653 * 125.50192 * 179.71562 * 13 11 10 15 15 C 1.55407 * 102.85819 * 157.91867 * 14 13 11 16 16 H 1.08999 * 111.38709 * 276.54038 * 15 14 13 17 17 O 1.42905 * 111.12504 * 152.16112 * 15 14 13 18 18 C 1.55081 * 100.49659 * 34.40633 * 15 14 13 19 19 O 1.41734 * 125.51019 * 0.02877 * 13 11 10 20 20 H 0.97010 * 119.99946 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 22 22 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 23 23 H 1.08997 * 110.72117 * 276.37406 * 14 13 11 24 24 H 1.09003 * 110.71874 * 39.64519 * 14 13 11 25 25 H 0.96698 * 113.99885 * 187.49345 * 17 15 14 26 26 H 1.08999 * 110.52960 * 206.26668 * 18 15 14 27 27 H 1.08996 * 110.65303 * 83.56538 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4980 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0019 10 6 2.5156 -3.8915 0.0029 11 6 1.9871 -5.3028 0.0036 12 8 0.7908 -5.5023 0.0029 13 7 2.8438 -6.3432 0.0039 14 6 2.4610 -7.7693 0.0104 15 6 3.7250 -8.4693 -0.5616 16 1 3.7307 -8.4508 -1.6515 17 8 3.8399 -9.8065 -0.0707 18 6 4.8390 -7.5608 0.0204 19 8 4.2578 -6.2454 0.0042 20 1 -0.4850 0.8401 -0.0004 21 1 3.1242 -3.7307 0.8928 22 1 3.1243 -3.7322 -0.8872 23 1 2.2557 -8.1088 1.0256 24 1 1.6002 -7.9404 -0.6360 25 1 4.6696 -10.2426 -0.3079 26 1 5.7275 -7.5939 -0.6101 27 1 5.0838 -7.8580 1.0400 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308185301.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:08 Heat of formation + Delta-G solvation = -94.265139 kcal Electronic energy + Delta-G solvation = -14027.587522 eV Core-core repulsion = 11299.416729 eV Total energy + Delta-G solvation = -2728.170793 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.23417 -39.60456 -37.37378 -34.60296 -33.66819 -32.23455 -30.23159 -27.70553 -26.14412 -23.17786 -21.90439 -19.94218 -18.93525 -18.44697 -17.49908 -16.93629 -16.88808 -16.34850 -15.79179 -15.55757 -15.42508 -15.00267 -14.50253 -14.25143 -13.93789 -13.48225 -13.19419 -12.89236 -12.67432 -12.60498 -11.91875 -11.75338 -11.37833 -11.15279 -11.11466 -10.34612 -9.86734 -8.70388 -8.36004 -6.15116 0.66523 1.30036 1.31483 1.42961 1.49452 1.60893 2.25646 2.39879 2.98155 3.14476 3.22727 3.32646 3.65473 3.82121 4.16403 4.20445 4.34839 4.43844 4.47999 4.52027 4.77908 5.19620 5.41003 6.04484 6.19087 6.72926 6.79925 7.05042 8.73458 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.063934 B = 0.005267 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.848036 B = 5314.523994 C = 5708.117900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.001 2.999 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.549 4.549 8 H 0.081 0.919 9 S -0.141 6.141 10 C -0.116 4.116 11 C 0.571 3.429 12 O -0.537 6.537 13 N -0.482 5.482 14 C 0.087 3.913 15 C 0.093 3.907 16 H 0.108 0.892 17 O -0.557 6.557 18 C -0.006 4.006 19 O -0.176 6.176 20 H 0.273 0.727 21 H 0.103 0.897 22 H 0.106 0.894 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.411 0.589 26 H 0.146 0.854 27 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.543 -17.059 -1.584 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.696 4.696 8 H 0.099 0.901 9 S 0.086 5.914 10 C -0.267 4.267 11 C 0.361 3.639 12 O -0.414 6.414 13 N -0.267 5.267 14 C -0.034 4.034 15 C 0.032 3.968 16 H 0.126 0.874 17 O -0.367 6.367 18 C -0.082 4.082 19 O -0.177 6.177 20 H 0.082 0.918 21 H 0.122 0.878 22 H 0.125 0.875 23 H 0.106 0.894 24 H 0.120 0.880 25 H 0.264 0.736 26 H 0.164 0.836 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.146 -16.893 -1.340 20.283 hybrid contribution 2.132 0.893 -0.084 2.313 sum 13.278 -16.000 -1.424 20.841 Atomic orbital electron populations 1.70173 1.07922 1.28744 1.47773 1.26141 0.96025 1.03298 0.93575 0.84923 0.78127 0.75843 0.78888 1.19141 1.20053 1.18376 1.23182 0.95324 0.91873 1.59247 0.90081 1.85423 1.09813 0.99107 1.97071 1.23228 1.03564 0.93302 1.06625 1.19523 0.84252 0.85066 0.75079 1.90771 1.14629 1.84433 1.51608 1.50481 0.94978 1.06194 1.75019 1.22842 0.99078 0.77642 1.03844 1.23386 0.91400 0.83096 0.98900 0.87417 1.86472 1.45985 1.24650 1.79602 1.25030 0.97616 0.81251 1.04346 1.90766 1.00871 1.28493 1.97526 0.91844 0.87843 0.87544 0.89400 0.87968 0.73603 0.83621 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.29 13.22 21.65 0.29 -56.00 15 2 C 0.01 0.84 5.49 84.86 0.47 1.31 15 3 Si 1.00 44.16 29.55 68.60 2.03 46.19 15 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 15 5 H -0.28 -11.75 7.11 99.48 0.71 -11.05 15 6 H -0.26 -10.84 7.11 99.48 0.71 -10.14 15 7 C -0.55 -32.14 9.50 67.96 0.65 -31.49 15 8 H 0.08 4.46 7.80 -2.91 -0.02 4.44 15 9 S -0.14 -8.07 20.57 -56.49 -1.16 -9.24 15 10 C -0.12 -5.11 5.80 71.24 0.41 -4.70 15 11 C 0.57 23.35 7.94 87.66 0.70 24.05 15 12 O -0.54 -25.61 16.15 -3.03 -0.05 -25.66 15 13 N -0.48 -15.03 4.08 -456.45 -1.86 -16.89 15 14 C 0.09 2.06 6.83 86.99 0.59 2.65 15 15 C 0.09 1.31 4.61 32.13 0.15 1.46 15 16 H 0.11 1.20 8.14 -2.39 -0.02 1.18 15 17 O -0.56 -6.27 13.49 -148.98 -2.01 -8.28 15 18 C -0.01 -0.08 7.66 72.69 0.56 0.48 15 19 O -0.18 -4.55 11.84 -39.09 -0.46 -5.01 15 20 H 0.27 15.57 8.31 -92.70 -0.77 14.80 15 21 H 0.10 4.31 8.14 -2.39 -0.02 4.30 15 22 H 0.11 4.37 8.14 -2.39 -0.02 4.35 15 23 H 0.09 2.09 8.14 -2.39 -0.02 2.07 15 24 H 0.10 2.50 8.09 -2.39 -0.02 2.48 15 25 H 0.41 0.19 9.12 -74.06 -0.68 -0.48 15 26 H 0.15 0.96 8.14 -2.39 -0.02 0.94 15 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 15 Total: -1.00 -78.45 260.23 0.80 -77.64 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: 0.52 Total: 3.49 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 3.52 Total: -6.25 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -1.58 Total: -72.89 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -2.52 Total: -38.95 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.16 Total: -9.24 kcal Total: -78.45 0.80 -77.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308185301.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.621 kcal (2) G-P(sol) polarization free energy of solvation -78.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds