Wall clock time and date at job start Mon Mar 30 2020 03:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00184 * 2 1 4 4 H 1.48500 * 109.47191 * 269.99803 * 3 2 1 5 5 H 1.48497 * 109.47299 * 29.99893 * 3 2 1 6 6 H 1.48501 * 109.47233 * 149.99914 * 3 2 1 7 7 C 1.37883 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00301 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99720 * 359.97438 * 7 2 1 10 10 O 1.42107 * 106.40021 * 66.46222 * 9 7 2 11 11 O 1.42095 * 106.40466 * 293.54211 * 9 7 2 12 12 N 1.65593 * 107.21792 * 180.02562 * 9 7 2 13 13 C 1.46492 * 120.00239 * 65.00081 * 12 9 7 14 14 C 1.50703 * 109.47275 * 164.99968 * 13 12 9 15 15 O 1.20750 * 120.00052 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99769 * 180.02562 * 14 13 12 17 17 C 1.53001 * 117.49756 * 223.62102 * 16 14 13 18 18 C 1.52999 * 59.99986 * 252.51526 * 17 16 14 19 19 H 0.96999 * 119.99793 * 0.02562 * 1 2 3 20 20 H 0.97007 * 119.99904 * 245.00101 * 12 9 7 21 21 H 1.09003 * 109.47227 * 45.00273 * 13 12 9 22 22 H 1.09003 * 109.47322 * 285.00019 * 13 12 9 23 23 H 1.08996 * 115.55128 * 9.33567 * 16 14 13 24 24 H 1.09004 * 117.49834 * 0.02562 * 17 16 14 25 25 H 1.08997 * 117.49999 * 145.02096 * 17 16 14 26 26 H 1.09004 * 117.50109 * 252.51157 * 18 17 16 27 27 H 1.08998 * 117.52032 * 107.48340 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7201 0.0019 10 8 0.4509 -2.7962 -1.2476 11 8 0.4518 -2.7945 1.2519 12 7 2.2482 -3.9354 0.0030 13 6 3.1392 -4.1079 1.1529 14 6 3.7946 -5.4631 1.0819 15 8 3.5436 -6.2078 0.1651 16 6 4.7631 -5.8889 2.1551 17 6 6.0527 -6.5809 1.7088 18 6 4.9454 -7.3902 2.3869 19 1 -0.4850 0.8401 -0.0004 20 1 2.3171 -4.5332 -0.7579 21 1 2.5621 -4.0313 2.0745 22 1 3.9054 -3.3327 1.1385 23 1 4.8176 -5.2350 3.0255 24 1 6.2007 -6.7278 0.6389 25 1 6.9560 -6.3821 2.2854 26 1 5.1202 -7.7240 3.4097 27 1 4.3645 -8.0699 1.7634 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308418100.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:02 Heat of formation + Delta-G solvation = -106.707262 kcal Electronic energy + Delta-G solvation = -14368.002441 eV Core-core repulsion = 11639.292117 eV Total energy + Delta-G solvation = -2728.710323 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.84357 -36.25949 -35.23117 -33.99962 -33.93201 -33.06827 -27.85924 -26.14415 -23.29822 -22.61309 -19.54784 -18.90781 -17.58397 -16.81198 -15.94708 -15.87392 -15.04633 -14.88760 -14.47565 -13.96555 -13.76940 -13.19793 -12.64490 -12.49787 -11.99926 -11.72695 -11.28089 -11.22349 -10.84000 -10.66192 -10.61530 -10.57810 -10.29624 -10.20451 -9.53853 -9.25919 -9.07432 -8.54216 -6.71170 -5.33871 1.88904 2.30078 3.06223 3.13056 3.18552 3.70253 3.88235 4.06926 4.60577 4.63435 4.71853 4.74915 4.93171 5.29150 5.41067 5.62739 5.66488 5.71809 5.82236 5.88445 5.91749 6.41233 6.76924 7.30359 7.56605 7.89233 7.96526 8.87423 10.23114 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.038547 B = 0.007123 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.205417 B = 3930.169880 C = 4353.690340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.132 3.868 3 Si 0.922 3.078 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.022 5.022 8 H 0.102 0.898 9 S 2.716 3.284 10 O -1.003 7.003 11 O -1.007 7.007 12 N -1.132 6.132 13 C 0.083 3.917 14 C 0.382 3.618 15 O -0.453 6.453 16 C -0.220 4.220 17 C -0.150 4.150 18 C -0.153 4.153 19 H 0.291 0.709 20 H 0.409 0.591 21 H 0.111 0.889 22 H 0.098 0.902 23 H 0.130 0.870 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.243 -7.652 5.270 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.086 4.086 3 Si 0.746 3.254 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.155 5.155 8 H 0.121 0.879 9 S 2.816 3.184 10 O -0.993 6.993 11 O -0.997 6.997 12 N -0.889 5.889 13 C -0.045 4.045 14 C 0.257 3.743 15 O -0.326 6.326 16 C -0.240 4.240 17 C -0.187 4.187 18 C -0.190 4.190 19 H 0.102 0.898 20 H 0.242 0.758 21 H 0.129 0.871 22 H 0.115 0.885 23 H 0.148 0.852 24 H 0.119 0.881 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.960 -7.996 4.947 13.697 hybrid contribution 1.053 1.131 -0.189 1.557 sum 11.013 -6.864 4.758 13.822 Atomic orbital electron populations 1.69897 1.06800 1.30774 1.39902 1.24755 0.94473 1.00848 0.88501 0.86141 0.80088 0.80000 0.79167 1.19231 1.19988 1.18663 1.30545 1.06080 1.11817 1.67070 0.87926 1.00408 0.72009 0.73099 0.72889 1.93383 1.72859 1.87537 1.45537 1.93352 1.72827 1.87513 1.45987 1.55922 1.55289 1.51483 1.26216 1.21369 0.95325 0.95749 0.92030 1.24019 0.78653 0.88066 0.83577 1.90341 1.55825 1.53593 1.32864 1.22857 1.00634 0.98103 1.02393 1.22936 0.91575 1.02172 1.02052 1.22955 1.02091 0.91540 1.02423 0.89844 0.75757 0.87111 0.88451 0.85160 0.88104 0.87762 0.87847 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.71 13.19 55.43 0.73 -23.97 15 2 C 0.13 3.66 5.46 -17.82 -0.10 3.56 15 3 Si 0.92 20.26 29.54 -169.99 -5.02 15.24 15 4 H -0.27 -5.73 7.11 56.52 0.40 -5.32 15 5 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 6 H -0.26 -5.50 7.11 56.52 0.40 -5.09 15 7 C -1.02 -27.67 9.72 30.60 0.30 -27.38 15 8 H 0.10 2.50 7.81 -52.49 -0.41 2.09 15 9 S 2.72 72.21 5.02 -107.50 -0.54 71.67 15 10 O -1.00 -29.89 18.02 -57.17 -1.03 -30.92 15 11 O -1.01 -29.06 17.49 -57.17 -1.00 -30.06 15 12 N -1.13 -23.37 5.93 -11.66 -0.07 -23.44 15 13 C 0.08 1.37 6.64 -5.20 -0.03 1.33 15 14 C 0.38 5.57 6.99 -29.03 -0.20 5.37 15 15 O -0.45 -7.81 15.80 6.01 0.09 -7.72 15 16 C -0.22 -2.34 6.13 -91.77 -0.56 -2.90 15 17 C -0.15 -1.37 10.14 -26.73 -0.27 -1.64 15 18 C -0.15 -1.44 10.05 -26.73 -0.27 -1.71 15 19 H 0.29 7.64 8.31 -40.82 -0.34 7.30 15 20 H 0.41 8.05 7.71 -34.47 -0.27 7.79 15 21 H 0.11 1.76 7.75 -51.93 -0.40 1.36 15 22 H 0.10 1.39 8.14 -51.93 -0.42 0.96 15 23 H 0.13 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.10 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.10 0.72 8.14 -51.93 -0.42 0.29 15 26 H 0.10 0.75 8.14 -51.93 -0.42 0.32 15 27 H 0.10 1.10 7.89 -51.93 -0.41 0.69 15 LS Contribution 261.61 15.07 3.94 3.94 Total: -1.00 -35.62 261.61 -6.77 -42.38 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -2.74 Total: 6.23 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -1.14 Total: -23.36 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.66 Total: -47.41 kcal Atomic # 8 Polarization: -66.76 SS G_CDS: -1.93 Total: -68.70 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 72.21 SS G_CDS: -0.54 Total: 71.67 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -35.62 -6.77 -42.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308418100.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.323 kcal (2) G-P(sol) polarization free energy of solvation -35.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds