Wall clock time and date at job start Mon Mar 30 2020 03:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00184 * 2 1 4 4 H 1.48500 * 109.47191 * 269.99803 * 3 2 1 5 5 H 1.48497 * 109.47299 * 29.99893 * 3 2 1 6 6 H 1.48501 * 109.47233 * 149.99914 * 3 2 1 7 7 C 1.37883 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00301 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99720 * 359.97438 * 7 2 1 10 10 O 1.42107 * 106.40021 * 66.46222 * 9 7 2 11 11 O 1.42095 * 106.40466 * 293.54211 * 9 7 2 12 12 N 1.65593 * 107.21792 * 180.02562 * 9 7 2 13 13 C 1.46492 * 120.00239 * 65.00081 * 12 9 7 14 14 C 1.50703 * 109.47275 * 164.99968 * 13 12 9 15 15 O 1.20750 * 120.00052 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99769 * 180.02562 * 14 13 12 17 17 C 1.53001 * 117.49756 * 223.62102 * 16 14 13 18 18 C 1.52999 * 59.99986 * 252.51526 * 17 16 14 19 19 H 0.96999 * 119.99793 * 0.02562 * 1 2 3 20 20 H 0.97007 * 119.99904 * 245.00101 * 12 9 7 21 21 H 1.09003 * 109.47227 * 45.00273 * 13 12 9 22 22 H 1.09003 * 109.47322 * 285.00019 * 13 12 9 23 23 H 1.08996 * 115.55128 * 9.33567 * 16 14 13 24 24 H 1.09004 * 117.49834 * 0.02562 * 17 16 14 25 25 H 1.08997 * 117.49999 * 145.02096 * 17 16 14 26 26 H 1.09004 * 117.50109 * 252.51157 * 18 17 16 27 27 H 1.08998 * 117.52032 * 107.48340 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7201 0.0019 10 8 0.4509 -2.7962 -1.2476 11 8 0.4518 -2.7945 1.2519 12 7 2.2482 -3.9354 0.0030 13 6 3.1392 -4.1079 1.1529 14 6 3.7946 -5.4631 1.0819 15 8 3.5436 -6.2078 0.1651 16 6 4.7631 -5.8889 2.1551 17 6 6.0527 -6.5809 1.7088 18 6 4.9454 -7.3902 2.3869 19 1 -0.4850 0.8401 -0.0004 20 1 2.3171 -4.5332 -0.7579 21 1 2.5621 -4.0313 2.0745 22 1 3.9054 -3.3327 1.1385 23 1 4.8176 -5.2350 3.0255 24 1 6.2007 -6.7278 0.6389 25 1 6.9560 -6.3821 2.2854 26 1 5.1202 -7.7240 3.4097 27 1 4.3645 -8.0699 1.7634 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308418100.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:01 Heat of formation + Delta-G solvation = -135.556992 kcal Electronic energy + Delta-G solvation = -14369.253459 eV Core-core repulsion = 11639.292117 eV Total energy + Delta-G solvation = -2729.961342 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.97923 -37.45385 -37.14090 -36.17311 -35.56746 -35.11531 -29.19710 -28.26083 -24.39165 -23.30805 -21.18910 -20.37952 -19.38404 -18.50167 -17.71614 -17.15254 -16.73829 -16.33023 -15.79165 -15.75762 -15.31999 -14.71008 -14.05124 -13.88703 -13.50913 -13.28039 -12.99644 -12.66958 -12.53985 -12.46103 -12.41140 -12.26463 -11.55655 -11.44736 -11.23878 -11.04738 -10.74877 -10.27498 -8.74817 -7.48954 0.29545 0.77899 1.37512 1.38211 1.54486 2.22467 2.59093 2.80458 2.92607 2.95891 3.69994 3.80547 4.01466 4.10076 4.27599 4.37951 4.43509 4.57917 4.75696 4.88852 5.00142 5.10564 5.23128 5.29526 5.89967 6.21649 6.45649 6.78399 8.22093 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.038547 B = 0.007123 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.205417 B = 3930.169880 C = 4353.690340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.068 3.932 3 Si 0.995 3.005 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.241 1.241 7 C -1.037 5.037 8 H 0.127 0.873 9 S 2.720 3.280 10 O -1.046 7.046 11 O -1.039 7.039 12 N -1.124 6.124 13 C 0.065 3.935 14 C 0.387 3.613 15 O -0.488 6.488 16 C -0.229 4.229 17 C -0.139 4.139 18 C -0.151 4.151 19 H 0.299 0.701 20 H 0.413 0.587 21 H 0.115 0.885 22 H 0.125 0.875 23 H 0.159 0.841 24 H 0.087 0.913 25 H 0.135 0.865 26 H 0.131 0.869 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.917 -6.995 6.508 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.145 4.145 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.164 1.164 7 C -1.171 5.171 8 H 0.145 0.855 9 S 2.822 3.178 10 O -1.037 7.037 11 O -1.029 7.029 12 N -0.885 5.885 13 C -0.061 4.061 14 C 0.264 3.736 15 O -0.364 6.364 16 C -0.248 4.248 17 C -0.176 4.176 18 C -0.188 4.188 19 H 0.109 0.891 20 H 0.248 0.752 21 H 0.133 0.867 22 H 0.142 0.858 23 H 0.176 0.824 24 H 0.106 0.894 25 H 0.153 0.847 26 H 0.150 0.850 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.634 -7.369 6.198 15.885 hybrid contribution 0.235 0.830 -0.565 1.031 sum 12.869 -6.540 5.633 15.495 Atomic orbital electron populations 1.70001 1.08927 1.32428 1.41257 1.26081 0.95382 1.05549 0.87473 0.85053 0.79302 0.74454 0.79869 1.18356 1.18860 1.16375 1.30848 1.07413 1.11926 1.66870 0.85471 0.99921 0.72500 0.73891 0.71535 1.93314 1.74854 1.88386 1.47113 1.93301 1.74404 1.88227 1.46941 1.55346 1.55140 1.50141 1.27828 1.21844 0.95501 0.98364 0.90394 1.24275 0.78642 0.86631 0.84044 1.90339 1.57330 1.54144 1.34606 1.22874 1.00519 0.99500 1.01914 1.23074 0.91980 1.00666 1.01847 1.23076 1.01793 0.90197 1.03740 0.89073 0.75223 0.86687 0.85774 0.82361 0.89415 0.84706 0.85045 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.01 13.19 21.45 0.28 -52.73 15 2 C 0.07 3.71 5.46 84.66 0.46 4.18 15 3 Si 1.00 40.05 29.54 68.60 2.03 42.08 15 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 5 H -0.26 -10.07 7.11 99.48 0.71 -9.36 15 6 H -0.24 -8.78 7.11 99.48 0.71 -8.07 15 7 C -1.04 -55.55 9.72 67.74 0.66 -54.89 15 8 H 0.13 5.95 7.81 -2.91 -0.02 5.92 15 9 S 2.72 147.19 5.02 -56.49 -0.28 146.91 15 10 O -1.05 -64.39 18.02 -128.00 -2.31 -66.70 15 11 O -1.04 -61.35 17.49 -128.00 -2.24 -63.59 15 12 N -1.12 -46.59 5.93 -190.79 -1.13 -47.72 15 13 C 0.07 2.08 6.64 85.64 0.57 2.65 15 14 C 0.39 10.84 6.99 29.10 0.20 11.04 15 15 O -0.49 -16.81 15.80 -1.42 -0.02 -16.84 15 16 C -0.23 -4.23 6.13 -11.54 -0.07 -4.30 15 17 C -0.14 -2.10 10.14 30.59 0.31 -1.79 15 18 C -0.15 -2.45 10.05 30.59 0.31 -2.15 15 19 H 0.30 15.89 8.31 -92.71 -0.77 15.11 15 20 H 0.41 16.54 7.71 -96.74 -0.75 15.80 15 21 H 0.12 3.56 7.75 -2.39 -0.02 3.54 15 22 H 0.12 3.25 8.14 -2.39 -0.02 3.23 15 23 H 0.16 2.02 8.14 -2.39 -0.02 2.00 15 24 H 0.09 1.58 8.14 -2.39 -0.02 1.57 15 25 H 0.13 1.25 8.14 -2.39 -0.02 1.23 15 26 H 0.13 1.40 8.14 -2.38 -0.02 1.38 15 27 H 0.08 1.72 7.89 -2.39 -0.02 1.70 15 Total: -1.00 -78.32 261.61 -0.79 -79.11 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.45 Total: 24.75 kcal Atomic # 6 Polarization: -47.71 SS G_CDS: 2.44 Total: -45.27 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -0.85 Total: -100.45 kcal Atomic # 8 Polarization: -142.55 SS G_CDS: -4.57 Total: -147.12 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Atomic # 16 Polarization: 147.19 SS G_CDS: -0.28 Total: 146.91 kcal Total: -78.32 -0.79 -79.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308418100.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.450 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds