Wall clock time and date at job start Mon Mar 30 2020 03:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29491 * 1 3 3 Si 1.86798 * 120.00125 * 2 1 4 4 H 1.48505 * 109.46848 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47234 * 299.99870 * 3 2 1 6 6 H 1.48497 * 109.46911 * 60.00172 * 3 2 1 7 7 C 1.46594 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99748 * 196.64154 * 7 2 1 9 9 C 1.39757 * 119.99840 * 16.63911 * 7 2 1 10 10 C 1.41597 * 120.20956 * 200.80873 * 9 7 2 11 11 C 1.36031 * 119.77123 * 180.02562 * 10 9 7 12 12 C 1.39763 * 120.22099 * 0.02562 * 11 10 9 13 13 O 1.35346 * 119.78153 * 180.02562 * 12 11 10 14 14 C 1.35369 * 118.00471 * 77.78300 * 13 12 11 15 15 O 1.22167 * 120.00024 * 355.26293 * 14 13 12 16 16 N 1.31199 * 120.00239 * 175.25698 * 14 13 12 17 17 C 1.24998 * 120.00125 * 180.02562 * 16 14 13 18 18 O 9.95651 * 62.16187 * 173.51299 * 2 1 3 19 19 C 1.39773 * 120.44099 * 0.26630 * 12 11 10 20 20 C 1.36024 * 120.21686 * 359.44950 * 19 12 11 21 21 H 0.97004 * 119.99696 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.11811 * 0.02562 * 10 9 7 23 23 H 1.07999 * 119.88859 * 179.97438 * 11 10 9 24 24 H 1.07997 * 119.89036 * 179.72488 * 19 12 11 25 25 H 1.08004 * 120.10729 * 180.26978 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2289 1.6177 0.0000 4 1 3.6890 1.3462 0.0006 5 1 1.8703 2.3964 -1.2125 6 1 1.8702 2.3963 1.2125 7 6 2.0278 -1.2696 -0.0006 8 1 3.0739 -1.2893 0.2673 9 6 1.3728 -2.4544 -0.3477 10 6 1.9009 -3.7048 0.0554 11 6 1.2563 -4.8525 -0.2879 12 6 0.0770 -4.8002 -1.0361 13 8 -0.5574 -5.9476 -1.3723 14 6 -1.3006 -6.5644 -0.4237 15 8 -1.3141 -6.1318 0.7187 16 7 -2.0064 -7.6267 -0.7313 17 6 -2.6931 -8.1959 0.1445 18 8 -3.3545 -8.7479 0.9947 19 6 -0.4490 -3.5711 -1.4439 20 6 0.1777 -2.4122 -1.1058 21 1 -0.4850 0.8401 -0.0004 22 1 2.8123 -3.7473 0.6333 23 1 1.6576 -5.8073 0.0182 24 1 -1.3585 -3.5413 -2.0256 25 1 -0.2327 -1.4632 -1.4181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308832921.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:43 Heat of formation + Delta-G solvation = -43.742578 kcal Electronic energy + Delta-G solvation = -14916.591528 eV Core-core repulsion = 12055.167607 eV Total energy + Delta-G solvation = -2861.423921 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.88434 -39.50455 -38.00958 -36.38288 -34.78626 -33.70745 -29.85596 -29.48515 -25.93186 -24.02075 -21.34536 -20.91488 -19.65321 -18.32967 -17.74105 -17.34768 -16.89882 -15.80961 -15.55673 -15.13099 -14.63647 -14.11123 -13.52948 -12.97411 -12.27602 -12.09060 -11.86024 -11.52100 -11.36422 -11.06096 -10.95666 -10.45783 -10.39813 -10.28826 -10.06948 -9.58577 -9.23023 -7.75416 -7.57794 -7.17004 -4.55649 0.57073 1.02543 2.12850 2.61104 2.86425 2.91946 3.00536 3.04515 3.34172 3.62294 4.06454 4.52205 5.50285 5.89541 6.11912 6.18039 6.53479 6.73959 6.89137 6.98735 7.11087 7.26165 7.36933 7.71832 7.81524 7.87929 7.91528 8.30629 8.54057 8.58792 8.90066 9.65442 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.058742 B = 0.005247 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.544355 B = 5335.045171 C = 5454.658741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.069 3.931 3 Si 0.922 3.078 4 H -0.253 1.253 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.433 4.433 8 H 0.089 0.911 9 C 0.114 3.886 10 C -0.235 4.235 11 C -0.055 4.055 12 C -0.107 4.107 13 O -0.239 6.239 14 C 0.630 3.370 15 O -0.550 6.550 16 N -0.530 5.530 17 C 0.724 3.276 18 O -0.327 6.327 19 C -0.070 4.070 20 C -0.184 4.184 21 H 0.293 0.707 22 H 0.099 0.901 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.706 -4.213 -1.630 4.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.159 4.159 3 Si 0.745 3.255 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.459 4.459 8 H 0.107 0.893 9 C 0.111 3.889 10 C -0.254 4.254 11 C -0.074 4.074 12 C -0.150 4.150 13 O -0.149 6.149 14 C 0.392 3.608 15 O -0.438 6.438 16 N -0.301 5.301 17 C 0.424 3.576 18 O -0.174 6.174 19 C -0.089 4.089 20 C -0.203 4.203 21 H 0.106 0.894 22 H 0.117 0.883 23 H 0.110 0.890 24 H 0.113 0.887 25 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.134 -4.269 -1.379 4.968 hybrid contribution -0.020 0.559 0.598 0.819 sum -2.154 -3.710 -0.781 4.360 Atomic orbital electron populations 1.69141 1.09001 1.30943 1.26869 1.27662 0.94616 1.02509 0.91108 0.86018 0.81331 0.79082 0.79070 1.17603 1.19105 1.19415 1.20930 0.97542 0.89933 1.37446 0.89263 1.17722 0.91222 0.92091 0.87871 1.20580 1.03822 0.91923 1.09091 1.20363 0.94428 0.97309 0.95316 1.18107 0.96077 0.81799 1.19066 1.84822 1.56208 1.36965 1.36898 1.19257 0.77856 0.78997 0.84668 1.91292 1.65120 1.66586 1.20808 1.61989 1.25065 1.20983 1.22083 1.25612 0.80999 0.78709 0.72307 1.91180 1.49503 1.52005 1.24753 1.20402 0.98177 0.91323 0.98981 1.21054 0.99680 0.96481 1.03066 0.89432 0.88293 0.89000 0.88691 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -17.24 10.77 55.99 0.60 -16.64 15 2 C 0.07 1.56 5.36 -15.17 -0.08 1.48 15 3 Si 0.92 16.54 29.67 -169.99 -5.04 11.49 15 4 H -0.25 -4.50 7.11 56.52 0.40 -4.10 15 5 H -0.27 -4.67 7.11 56.52 0.40 -4.27 15 6 H -0.27 -4.75 7.11 56.52 0.40 -4.35 15 7 C -0.43 -10.63 9.30 -35.65 -0.33 -10.96 15 8 H 0.09 2.07 7.98 -52.49 -0.42 1.65 15 9 C 0.11 2.93 5.65 -106.77 -0.60 2.32 15 10 C -0.23 -5.73 9.76 -39.09 -0.38 -6.11 15 11 C -0.06 -1.31 9.62 -39.80 -0.38 -1.70 15 12 C -0.11 -2.57 5.24 -38.44 -0.20 -2.77 15 13 O -0.24 -5.21 10.00 -24.86 -0.25 -5.46 15 14 C 0.63 12.68 8.47 52.49 0.44 13.13 15 15 O -0.55 -12.64 15.92 -19.80 -0.32 -12.96 15 16 N -0.53 -8.39 10.15 10.84 0.11 -8.28 15 17 C 0.72 9.66 15.93 49.98 0.80 10.46 15 18 O -0.33 -4.29 18.01 5.76 0.10 -4.18 15 19 C -0.07 -1.69 9.92 -39.80 -0.39 -2.08 15 20 C -0.18 -4.65 8.75 -39.10 -0.34 -4.99 15 21 H 0.29 6.00 8.27 -40.82 -0.34 5.66 15 22 H 0.10 2.22 8.06 -52.48 -0.42 1.80 15 23 H 0.09 1.98 8.06 -52.49 -0.42 1.56 15 24 H 0.09 2.08 8.06 -52.49 -0.42 1.65 15 25 H 0.13 3.24 5.86 -52.48 -0.31 2.93 15 LS Contribution 250.11 15.07 3.77 3.77 Total: -1.00 -27.32 250.11 -3.63 -30.94 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -1.13 Total: 2.54 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -1.48 Total: -1.23 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.71 Total: -24.92 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.46 Total: -22.60 kcal Atomic # 14 Polarization: 16.54 SS G_CDS: -5.04 Total: 11.49 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.32 -3.63 -30.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308832921.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.800 kcal (2) G-P(sol) polarization free energy of solvation -27.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds