Wall clock time and date at job start Mon Mar 30 2020 03:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29491 * 1 3 3 Si 1.86798 * 120.00125 * 2 1 4 4 H 1.48505 * 109.46848 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47234 * 299.99870 * 3 2 1 6 6 H 1.48497 * 109.46911 * 60.00172 * 3 2 1 7 7 C 1.46594 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99748 * 196.64154 * 7 2 1 9 9 C 1.39757 * 119.99840 * 16.63911 * 7 2 1 10 10 C 1.41597 * 120.20956 * 200.80873 * 9 7 2 11 11 C 1.36031 * 119.77123 * 180.02562 * 10 9 7 12 12 C 1.39763 * 120.22099 * 0.02562 * 11 10 9 13 13 O 1.35346 * 119.78153 * 180.02562 * 12 11 10 14 14 C 1.35369 * 118.00471 * 77.78300 * 13 12 11 15 15 O 1.22167 * 120.00024 * 355.26293 * 14 13 12 16 16 N 1.31199 * 120.00239 * 175.25698 * 14 13 12 17 17 C 1.24998 * 120.00125 * 180.02562 * 16 14 13 18 18 O 9.95651 * 62.16187 * 173.51299 * 2 1 3 19 19 C 1.39773 * 120.44099 * 0.26630 * 12 11 10 20 20 C 1.36024 * 120.21686 * 359.44950 * 19 12 11 21 21 H 0.97004 * 119.99696 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.11811 * 0.02562 * 10 9 7 23 23 H 1.07999 * 119.88859 * 179.97438 * 11 10 9 24 24 H 1.07997 * 119.89036 * 179.72488 * 19 12 11 25 25 H 1.08004 * 120.10729 * 180.26978 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2289 1.6177 0.0000 4 1 3.6890 1.3462 0.0006 5 1 1.8703 2.3964 -1.2125 6 1 1.8702 2.3963 1.2125 7 6 2.0278 -1.2696 -0.0006 8 1 3.0739 -1.2893 0.2673 9 6 1.3728 -2.4544 -0.3477 10 6 1.9009 -3.7048 0.0554 11 6 1.2563 -4.8525 -0.2879 12 6 0.0770 -4.8002 -1.0361 13 8 -0.5574 -5.9476 -1.3723 14 6 -1.3006 -6.5644 -0.4237 15 8 -1.3141 -6.1318 0.7187 16 7 -2.0064 -7.6267 -0.7313 17 6 -2.6931 -8.1959 0.1445 18 8 -3.3545 -8.7479 0.9947 19 6 -0.4490 -3.5711 -1.4439 20 6 0.1777 -2.4122 -1.1058 21 1 -0.4850 0.8401 -0.0004 22 1 2.8123 -3.7473 0.6333 23 1 1.6576 -5.8073 0.0182 24 1 -1.3585 -3.5413 -2.0256 25 1 -0.2327 -1.4632 -1.4181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308832921.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:42 Heat of formation + Delta-G solvation = -62.664378 kcal Electronic energy + Delta-G solvation = -14917.412039 eV Core-core repulsion = 12055.167607 eV Total energy + Delta-G solvation = -2862.244432 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.45542 -40.83782 -39.65538 -38.11181 -36.32018 -35.47021 -31.70751 -31.32509 -27.59770 -25.65060 -23.15816 -22.67929 -21.14814 -19.80657 -19.53579 -18.99407 -18.28727 -17.36317 -16.98608 -16.69451 -16.20585 -15.82715 -15.26720 -14.63622 -14.08845 -13.82600 -13.44809 -13.27364 -12.87569 -12.71919 -12.63194 -12.06499 -11.90451 -11.84419 -11.76628 -11.26881 -11.05132 -9.63547 -9.44544 -8.88480 -6.41915 -0.71689 -0.29267 0.55034 1.13170 1.18349 1.39582 1.52754 1.56736 1.86539 2.13679 2.41097 2.87847 3.62898 4.28779 4.30128 4.35483 4.81617 4.94060 5.13448 5.21882 5.38923 5.51969 5.63127 5.92469 5.98628 6.03903 6.16113 6.48258 6.67808 6.83266 7.14340 7.98988 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.058742 B = 0.005247 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.544355 B = 5335.045171 C = 5454.658741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.032 3.968 3 Si 1.000 3.000 4 H -0.251 1.251 5 H -0.257 1.257 6 H -0.260 1.260 7 C -0.461 4.461 8 H 0.094 0.906 9 C 0.085 3.915 10 C -0.251 4.251 11 C -0.062 4.062 12 C -0.116 4.116 13 O -0.243 6.243 14 C 0.642 3.358 15 O -0.584 6.584 16 N -0.530 5.530 17 C 0.758 3.242 18 O -0.308 6.308 19 C -0.077 4.077 20 C -0.204 4.204 21 H 0.306 0.694 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.907 -4.156 -1.451 4.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.193 4.193 3 Si 0.818 3.182 4 H -0.174 1.174 5 H -0.181 1.181 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.112 0.888 9 C 0.082 3.918 10 C -0.270 4.270 11 C -0.080 4.080 12 C -0.160 4.160 13 O -0.153 6.153 14 C 0.404 3.596 15 O -0.474 6.474 16 N -0.302 5.302 17 C 0.458 3.542 18 O -0.153 6.153 19 C -0.096 4.096 20 C -0.223 4.223 21 H 0.119 0.881 22 H 0.129 0.871 23 H 0.128 0.872 24 H 0.129 0.871 25 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.377 -4.269 -1.190 5.029 hybrid contribution -0.102 0.373 0.588 0.703 sum -2.479 -3.897 -0.603 4.658 Atomic orbital electron populations 1.69142 1.10494 1.32809 1.26426 1.28583 0.95364 1.05442 0.89941 0.84886 0.79670 0.74085 0.79519 1.17400 1.18107 1.18486 1.21267 0.98054 0.91003 1.38218 0.88799 1.18084 0.91874 0.93172 0.88660 1.20782 1.04534 0.91963 1.09764 1.20585 0.94398 0.97932 0.95126 1.18150 0.96660 0.82263 1.18884 1.84678 1.56689 1.36453 1.37460 1.18979 0.77583 0.79453 0.83583 1.91285 1.66398 1.67840 1.21907 1.61782 1.25401 1.20216 1.22844 1.25032 0.79815 0.77743 0.71604 1.91224 1.48749 1.51367 1.23936 1.20605 0.98674 0.91295 0.99049 1.21067 1.00352 0.96674 1.04201 0.88074 0.87133 0.87243 0.87077 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -35.90 10.77 23.22 0.25 -35.65 15 2 C 0.03 1.45 5.36 87.22 0.47 1.91 15 3 Si 1.00 32.97 29.67 68.60 2.04 35.01 15 4 H -0.25 -8.12 7.11 99.48 0.71 -7.42 15 5 H -0.26 -8.04 7.11 99.48 0.71 -7.33 15 6 H -0.26 -8.19 7.11 99.48 0.71 -7.48 15 7 C -0.46 -22.91 9.30 24.82 0.23 -22.68 15 8 H 0.09 4.41 7.98 -2.91 -0.02 4.38 15 9 C 0.08 4.47 5.65 -21.26 -0.12 4.35 15 10 C -0.25 -12.45 9.76 22.59 0.22 -12.23 15 11 C -0.06 -2.95 9.62 22.13 0.21 -2.73 15 12 C -0.12 -5.60 5.24 23.01 0.12 -5.48 15 13 O -0.24 -10.46 10.00 -0.49 0.00 -10.46 15 14 C 0.64 25.17 8.47 130.34 1.10 26.27 15 15 O -0.58 -26.43 15.92 17.62 0.28 -26.15 15 16 N -0.53 -15.77 10.15 -464.49 -4.71 -20.49 15 17 C 0.76 18.31 15.93 131.22 2.09 20.40 15 18 O -0.31 -7.15 18.01 -2.30 -0.04 -7.19 15 19 C -0.08 -3.79 9.92 22.13 0.22 -3.57 15 20 C -0.20 -10.57 8.75 22.58 0.20 -10.38 15 21 H 0.31 12.39 8.27 -92.71 -0.77 11.63 15 22 H 0.11 5.03 8.06 -2.91 -0.02 5.01 15 23 H 0.11 4.69 8.06 -2.91 -0.02 4.67 15 24 H 0.11 4.89 8.06 -2.91 -0.02 4.87 15 25 H 0.12 6.34 5.86 -2.91 -0.02 6.33 15 Total: -1.00 -58.22 250.11 3.79 -54.43 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.24 Total: 14.65 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 4.74 Total: -4.14 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -4.46 Total: -56.14 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: 0.23 Total: -43.81 kcal Atomic # 14 Polarization: 32.97 SS G_CDS: 2.04 Total: 35.01 kcal Total: -58.22 3.79 -54.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308832921.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.234 kcal (2) G-P(sol) polarization free energy of solvation -58.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds