Wall clock time and date at job start Mon Mar 30 2020 03:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39803 * 120.06245 * 22.15904 * 3 2 1 5 5 C 1.37653 * 119.93931 * 179.69180 * 4 3 2 6 6 C 1.39291 * 120.05911 * 0.60473 * 5 4 3 7 7 N 1.39020 * 119.93886 * 179.69073 * 6 5 4 8 8 C 1.32719 * 120.00120 * 353.50969 * 7 6 5 9 9 H 1.08002 * 120.00046 * 5.26832 * 8 7 6 10 10 C 1.46785 * 120.00250 * 185.27021 * 8 7 6 11 11 N 1.29333 * 119.99929 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00054 * 179.97438 * 10 8 7 13 13 H 1.48491 * 109.47024 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.46895 * 119.99979 * 12 10 8 15 15 H 1.48493 * 109.46862 * 239.99648 * 12 10 8 16 16 C 1.39252 * 120.12459 * 359.67223 * 6 5 4 17 17 C 1.37694 * 120.05682 * 0.02562 * 16 6 5 18 18 N 1.48022 * 120.03088 * 180.02562 * 17 16 6 19 19 O 1.31700 * 119.99762 * 359.97160 * 18 17 16 20 20 O 1.31702 * 120.00220 * 179.97438 * 18 17 16 21 21 H 1.07999 * 120.02775 * 0.02562 * 4 3 2 22 22 H 1.08002 * 119.96684 * 180.29626 * 5 4 3 23 23 H 0.97004 * 119.99761 * 173.50610 * 7 6 5 24 24 H 0.96991 * 120.00258 * 180.02562 * 11 10 8 25 25 H 1.07993 * 119.97424 * 180.02562 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -1.1196 -0.4564 5 6 4.6453 -1.1139 -0.4612 6 6 5.3400 0.0020 -0.0002 7 7 6.7302 0.0026 -0.0002 8 6 7.3943 -1.1021 -0.3163 9 1 6.8581 -1.9761 -0.6556 10 6 8.8575 -1.1362 -0.2048 11 7 9.4996 -0.0895 0.2011 12 14 9.7921 -2.6913 -0.6490 13 1 8.8327 -3.7390 -1.0812 14 1 10.7396 -2.4005 -1.7549 15 1 10.5471 -3.1707 0.5364 16 6 4.6445 1.1170 0.4604 17 6 3.2676 1.1190 0.4616 18 7 2.5289 2.3048 0.9508 19 8 3.1888 3.3584 1.3856 20 8 1.2119 2.3063 0.9512 21 1 2.7307 -1.9867 -0.8099 22 1 5.1871 -1.9773 -0.8181 23 1 7.2148 0.8105 0.2309 24 1 10.4665 -0.1118 0.2744 25 1 5.1855 1.9810 0.8169 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308904092.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:49 Heat of formation + Delta-G solvation = 79.359237 kcal Electronic energy + Delta-G solvation = -14967.396623 eV Core-core repulsion = 12143.603548 eV Total energy + Delta-G solvation = -2823.793075 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.53739 -37.96903 -36.30669 -35.10831 -33.69353 -33.20765 -30.96552 -29.36896 -26.24733 -25.07606 -22.54898 -21.53068 -19.03949 -18.65853 -17.52265 -17.34707 -15.96126 -15.47248 -15.32041 -14.84048 -13.94684 -13.79191 -13.30284 -13.01631 -12.66837 -12.55750 -11.97325 -11.78158 -11.71894 -11.33809 -10.95745 -10.83618 -10.68156 -10.66671 -10.17288 -10.07849 -9.72258 -8.80109 -7.78680 -7.60453 -4.25598 -0.12043 1.57237 1.87390 2.07306 2.58990 2.61897 2.68968 3.27967 3.52411 3.65262 4.09208 4.30859 4.58389 4.90371 5.25104 5.56787 5.78923 5.82080 6.03759 6.06544 6.45438 6.50246 6.62286 6.81430 7.04236 7.32701 7.47807 7.50323 8.30636 8.50870 8.53230 9.29006 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.041531 B = 0.006139 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.035142 B = 4560.041674 C = 5219.201216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.277 3.723 3 C -0.189 4.189 4 C 0.013 3.987 5 C -0.218 4.218 6 C 0.129 3.871 7 N -0.457 5.457 8 C -0.298 4.298 9 H 0.132 0.868 10 C 0.038 3.962 11 N -0.795 5.795 12 Si 0.950 3.050 13 H -0.251 1.251 14 H -0.267 1.267 15 H -0.267 1.267 16 C -0.119 4.119 17 C 0.096 3.904 18 N -0.010 5.010 19 O -0.206 6.206 20 O -0.196 6.196 21 H 0.125 0.875 22 H 0.129 0.871 23 H 0.406 0.594 24 H 0.304 0.696 25 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.064 -4.353 -1.839 6.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.034 4.034 3 C -0.201 4.201 4 C -0.010 4.010 5 C -0.243 4.243 6 C -0.001 4.001 7 N -0.044 5.044 8 C -0.432 4.432 9 H 0.149 0.851 10 C -0.183 4.183 11 N -0.420 5.420 12 Si 0.772 3.228 13 H -0.174 1.174 14 H -0.192 1.192 15 H -0.192 1.192 16 C -0.143 4.143 17 C 0.005 3.995 18 N 0.459 4.541 19 O -0.392 6.392 20 O -0.382 6.382 21 H 0.143 0.857 22 H 0.147 0.853 23 H 0.241 0.759 24 H 0.117 0.883 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.163 -4.800 -1.994 6.660 hybrid contribution 1.092 0.324 0.174 1.152 sum 5.255 -4.476 -1.819 7.139 Atomic orbital electron populations 1.81018 1.12207 1.08977 1.12180 1.25252 0.92267 0.93003 0.92913 1.14459 0.84403 0.96916 1.24283 1.20359 0.93115 0.94265 0.93288 1.20145 0.92822 0.99422 1.11925 1.17148 0.82896 0.94924 1.05096 1.40243 1.02817 1.12860 1.48456 1.21421 0.88872 0.93477 1.39451 0.85055 1.27431 0.96733 0.99966 0.94168 1.68625 1.12177 1.30321 1.30864 0.85445 0.79230 0.78857 0.79286 1.17434 1.19195 1.19169 1.19994 0.90681 0.99580 1.04078 1.19627 0.90421 0.83559 1.05925 1.50617 1.03118 1.03237 0.97171 1.96189 1.68645 1.23293 1.51083 1.96262 0.89224 1.90271 1.62465 0.85690 0.85326 0.75870 0.88345 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.29 18.25 41.84 0.76 -9.52 15 2 C 0.28 5.79 12.67 -22.47 -0.28 5.51 15 3 C -0.19 -3.63 5.74 -106.82 -0.61 -4.25 15 4 C 0.01 0.21 9.74 -39.21 -0.38 -0.17 15 5 C -0.22 -3.62 9.27 -39.40 -0.37 -3.99 15 6 C 0.13 2.30 6.60 -83.83 -0.55 1.74 15 7 N -0.46 -8.25 5.28 -8.36 -0.04 -8.29 15 8 C -0.30 -5.41 9.79 -13.72 -0.13 -5.55 15 9 H 0.13 2.23 5.71 -52.49 -0.30 1.93 15 10 C 0.04 0.68 5.70 -15.15 -0.09 0.59 15 11 N -0.79 -14.90 13.09 56.00 0.73 -14.17 15 12 Si 0.95 13.64 29.65 -169.99 -5.04 8.60 15 13 H -0.25 -3.54 7.11 56.52 0.40 -3.14 15 14 H -0.27 -3.88 7.11 56.52 0.40 -3.48 15 15 H -0.27 -3.91 7.11 56.52 0.40 -3.50 15 16 C -0.12 -2.16 9.41 -39.40 -0.37 -2.53 15 17 C 0.10 1.91 6.90 -79.57 -0.55 1.36 15 18 N -0.01 -0.22 4.98 34.14 0.17 -0.05 15 19 O -0.21 -4.46 19.15 -31.57 -0.60 -5.06 15 20 O -0.20 -4.62 16.89 -31.57 -0.53 -5.15 15 21 H 0.13 1.71 8.06 -52.49 -0.42 1.29 15 22 H 0.13 1.95 5.96 -52.49 -0.31 1.64 15 23 H 0.41 7.27 7.99 -40.82 -0.33 6.94 15 24 H 0.30 5.16 8.26 -40.82 -0.34 4.82 15 25 H 0.14 2.33 7.57 -52.49 -0.40 1.94 15 LS Contribution 247.97 15.07 3.74 3.74 Total: -1.00 -23.70 247.97 -5.05 -28.75 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -0.89 Total: 8.44 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -3.34 Total: -7.28 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 1.62 Total: -32.03 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -1.14 Total: -10.21 kcal Atomic # 14 Polarization: 13.64 SS G_CDS: -5.04 Total: 8.60 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -23.70 -5.05 -28.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308904092.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.106 kcal (2) G-P(sol) polarization free energy of solvation -23.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds