Wall clock time and date at job start Mon Mar 30 2020 03:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39803 * 120.06245 * 22.15904 * 3 2 1 5 5 C 1.37653 * 119.93931 * 179.69180 * 4 3 2 6 6 C 1.39291 * 120.05911 * 0.60473 * 5 4 3 7 7 N 1.39020 * 119.93886 * 179.69073 * 6 5 4 8 8 C 1.32719 * 120.00120 * 353.50969 * 7 6 5 9 9 H 1.08002 * 120.00046 * 5.26832 * 8 7 6 10 10 C 1.46785 * 120.00250 * 185.27021 * 8 7 6 11 11 N 1.29333 * 119.99929 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00054 * 179.97438 * 10 8 7 13 13 H 1.48491 * 109.47024 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.46895 * 119.99979 * 12 10 8 15 15 H 1.48493 * 109.46862 * 239.99648 * 12 10 8 16 16 C 1.39252 * 120.12459 * 359.67223 * 6 5 4 17 17 C 1.37694 * 120.05682 * 0.02562 * 16 6 5 18 18 N 1.48022 * 120.03088 * 180.02562 * 17 16 6 19 19 O 1.31700 * 119.99762 * 359.97160 * 18 17 16 20 20 O 1.31702 * 120.00220 * 179.97438 * 18 17 16 21 21 H 1.07999 * 120.02775 * 0.02562 * 4 3 2 22 22 H 1.08002 * 119.96684 * 180.29626 * 5 4 3 23 23 H 0.97004 * 119.99761 * 173.50610 * 7 6 5 24 24 H 0.96991 * 120.00258 * 180.02562 * 11 10 8 25 25 H 1.07993 * 119.97424 * 180.02562 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -1.1196 -0.4564 5 6 4.6453 -1.1139 -0.4612 6 6 5.3400 0.0020 -0.0002 7 7 6.7302 0.0026 -0.0002 8 6 7.3943 -1.1021 -0.3163 9 1 6.8581 -1.9761 -0.6556 10 6 8.8575 -1.1362 -0.2048 11 7 9.4996 -0.0895 0.2011 12 14 9.7921 -2.6913 -0.6490 13 1 8.8327 -3.7390 -1.0812 14 1 10.7396 -2.4005 -1.7549 15 1 10.5471 -3.1707 0.5364 16 6 4.6445 1.1170 0.4604 17 6 3.2676 1.1190 0.4616 18 7 2.5289 2.3048 0.9508 19 8 3.1888 3.3584 1.3856 20 8 1.2119 2.3063 0.9512 21 1 2.7307 -1.9867 -0.8099 22 1 5.1871 -1.9773 -0.8181 23 1 7.2148 0.8105 0.2309 24 1 10.4665 -0.1118 0.2744 25 1 5.1855 1.9810 0.8169 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308904092.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:49 Heat of formation + Delta-G solvation = 56.017818 kcal Electronic energy + Delta-G solvation = -14968.408783 eV Core-core repulsion = 12143.603548 eV Total energy + Delta-G solvation = -2824.805235 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47757 -38.88848 -36.82308 -36.44980 -35.67670 -32.66570 -31.65960 -30.95844 -28.08813 -26.04578 -24.16149 -22.94144 -21.17015 -19.37085 -19.13612 -18.49604 -17.19753 -16.63182 -16.23540 -15.87153 -15.07875 -14.89625 -14.74253 -14.54270 -14.27677 -13.95750 -13.83228 -13.53294 -13.03079 -12.54477 -12.12715 -11.95112 -11.87695 -11.61318 -10.60941 -10.07136 -9.93478 -9.71306 -9.69276 -9.33244 -5.97533 -1.52129 0.36583 0.79549 1.02365 1.33110 1.39071 1.83365 2.01968 2.18241 2.47161 2.51807 2.60885 2.89655 3.42175 3.45195 3.97434 4.11793 4.20833 4.38671 4.67577 4.79541 5.07640 5.25344 5.40663 5.61640 5.78092 6.20747 6.29093 6.46593 7.42810 7.71813 8.60380 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.041531 B = 0.006139 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.035142 B = 4560.041674 C = 5219.201216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C 0.294 3.706 3 C -0.241 4.241 4 C 0.050 3.950 5 C -0.281 4.281 6 C 0.110 3.890 7 N -0.420 5.420 8 C 0.323 3.677 9 H 0.274 0.726 10 C -0.050 4.050 11 N -0.598 5.598 12 Si 1.044 2.956 13 H -0.191 1.191 14 H -0.252 1.252 15 H -0.256 1.256 16 C -0.130 4.130 17 C 0.072 3.928 18 N -0.108 5.108 19 O -0.691 6.691 20 O -0.667 6.667 21 H 0.155 0.845 22 H 0.206 0.794 23 H 0.440 0.560 24 H 0.380 0.620 25 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 39.132 -26.677 -9.923 48.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.252 5.252 2 C -0.011 4.011 3 C -0.257 4.257 4 C 0.028 3.972 5 C -0.306 4.306 6 C 0.012 3.988 7 N 0.001 4.999 8 C 0.140 3.860 9 H 0.289 0.711 10 C -0.289 4.289 11 N -0.220 5.220 12 Si 0.853 3.147 13 H -0.111 1.111 14 H -0.176 1.176 15 H -0.179 1.179 16 C -0.152 4.152 17 C -0.061 4.061 18 N 0.180 4.820 19 O -0.756 6.756 20 O -0.732 6.732 21 H 0.172 0.828 22 H 0.223 0.777 23 H 0.282 0.718 24 H 0.202 0.798 25 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 36.930 -25.537 -9.484 45.891 hybrid contribution -0.026 2.307 0.918 2.483 sum 36.905 -23.230 -8.566 44.441 Atomic orbital electron populations 1.80681 1.14503 1.13049 1.16917 1.26224 0.93814 0.90016 0.91095 1.15256 0.83011 0.99699 1.27711 1.20653 0.94548 0.92419 0.89553 1.20085 0.92126 0.99289 1.19121 1.17313 0.79105 0.96241 1.06163 1.42719 1.07218 1.14900 1.35077 1.28225 0.92652 0.90719 0.74447 0.71099 1.30438 0.94463 1.06947 0.97079 1.68575 1.20048 1.30607 1.02771 0.84107 0.79193 0.71126 0.80248 1.11066 1.17565 1.17941 1.19716 0.91283 0.98590 1.05601 1.19533 0.91578 0.86458 1.08520 1.47611 0.98868 1.05365 1.30129 1.95474 1.69352 1.31719 1.79015 1.95604 0.94371 1.94579 1.88638 0.82793 0.77719 0.71799 0.79833 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -39.79 18.25 19.00 0.35 -39.45 15 2 C 0.29 19.70 12.67 88.33 1.12 20.82 15 3 C -0.24 -13.59 5.74 -21.29 -0.12 -13.71 15 4 C 0.05 1.67 9.74 22.51 0.22 1.89 15 5 C -0.28 -5.27 9.27 22.38 0.21 -5.07 15 6 C 0.11 2.57 6.60 38.50 0.25 2.82 15 7 N -0.42 -2.78 5.28 -180.35 -0.95 -3.74 15 8 C 0.32 -2.29 9.79 86.80 0.85 -1.44 15 9 H 0.27 -4.90 5.71 -2.91 -0.02 -4.92 15 10 C -0.05 0.43 5.70 87.30 0.50 0.92 15 11 N -0.60 1.79 13.09 23.26 0.30 2.10 15 12 Si 1.04 -12.00 29.65 68.60 2.03 -9.96 15 13 H -0.19 2.80 7.11 99.48 0.71 3.50 15 14 H -0.25 1.98 7.11 99.48 0.71 2.68 15 15 H -0.26 1.84 7.11 99.48 0.71 2.55 15 16 C -0.13 -6.02 9.41 22.38 0.21 -5.81 15 17 C 0.07 4.67 6.90 36.61 0.25 4.92 15 18 N -0.11 -9.52 4.98 -45.89 -0.23 -9.74 15 19 O -0.69 -64.13 19.15 3.51 0.07 -64.06 15 20 O -0.67 -64.75 16.89 3.51 0.06 -64.69 15 21 H 0.15 3.94 8.06 -2.91 -0.02 3.92 15 22 H 0.21 -0.09 5.96 -2.91 -0.02 -0.11 15 23 H 0.44 3.13 7.99 -92.71 -0.74 2.39 15 24 H 0.38 -2.46 8.26 -92.72 -0.77 -3.23 15 25 H 0.10 5.03 7.57 -2.91 -0.02 5.01 15 Total: -1.00 -178.05 247.97 5.65 -172.39 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.53 Total: 11.80 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 3.49 Total: 5.35 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.53 Total: -50.83 kcal Atomic # 8 Polarization: -128.88 SS G_CDS: 0.13 Total: -128.75 kcal Atomic # 14 Polarization: -12.00 SS G_CDS: 2.03 Total: -9.96 kcal Total: -178.05 5.65 -172.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308904092.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.412 kcal (2) G-P(sol) polarization free energy of solvation -178.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -172.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds