Wall clock time and date at job start Mon Mar 30 2020 03:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39603 * 120.19991 * 199.25168 * 3 2 1 5 5 C 1.37929 * 119.92971 * 179.69680 * 4 3 2 6 6 C 1.38545 * 120.35603 * 0.58262 * 5 4 3 7 7 N 1.48021 * 119.78804 * 179.69413 * 6 5 4 8 8 O 1.31702 * 119.99618 * 180.02562 * 7 6 5 9 9 O 1.31696 * 120.00230 * 0.02562 * 7 6 5 10 10 C 1.38037 * 120.41624 * 359.71824 * 6 5 4 11 11 C 1.38972 * 120.05987 * 359.97438 * 10 6 5 12 12 N 1.38872 * 120.18171 * 180.02562 * 11 10 6 13 13 C 1.32724 * 119.99625 * 354.31133 * 12 11 10 14 14 H 1.08007 * 120.00534 * 5.12375 * 13 12 11 15 15 C 1.46775 * 120.00263 * 185.12331 * 13 12 11 16 16 N 1.29340 * 119.99733 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00536 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46689 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47016 * 119.99942 * 17 15 13 20 20 H 1.48502 * 109.47222 * 240.00390 * 17 15 13 21 21 H 1.07999 * 120.03393 * 359.97353 * 4 3 2 22 22 H 1.08005 * 119.81958 * 180.29633 * 5 4 3 23 23 H 1.07998 * 119.97486 * 180.02562 * 10 6 5 24 24 H 0.96994 * 119.99885 * 174.32014 * 12 11 10 25 25 H 0.97001 * 119.99847 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 1.1400 0.3978 5 6 4.6490 1.1324 0.4017 6 6 5.3440 0.0029 0.0009 7 7 6.8242 0.0109 0.0035 8 8 7.4891 -1.0604 -0.3771 9 8 7.4763 1.0891 0.3864 10 6 4.6649 -1.1296 -0.4012 11 6 3.2753 -1.1431 -0.4057 12 7 2.5894 -2.2812 -0.8092 13 6 3.2563 -3.3193 -1.2984 14 1 4.3364 -3.3124 -1.3061 15 6 2.5262 -4.4767 -1.8289 16 7 1.2329 -4.4849 -1.8201 17 14 3.4647 -5.9381 -2.5167 18 1 4.9239 -5.6830 -2.4117 19 1 3.1189 -7.1572 -1.7427 20 1 3.0976 -6.1358 -3.9420 21 1 2.7331 2.0250 0.7065 22 1 5.1901 2.0133 0.7143 23 1 5.2139 -2.0062 -0.7117 24 1 1.6231 -2.3174 -0.7337 25 1 0.7503 -5.2497 -2.1711 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308916865.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:52 Heat of formation + Delta-G solvation = 76.022583 kcal Electronic energy + Delta-G solvation = -15046.428453 eV Core-core repulsion = 12222.490690 eV Total energy + Delta-G solvation = -2823.937763 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.59720 -38.01592 -36.04582 -35.52424 -33.73906 -33.24699 -31.08781 -29.06296 -26.44999 -25.21136 -22.37034 -21.52444 -19.29583 -18.32604 -17.93926 -17.27373 -15.84995 -15.65011 -15.26937 -14.59480 -13.95325 -13.78742 -13.58792 -13.16099 -12.70052 -12.48847 -12.16940 -11.75022 -11.67110 -11.23258 -11.01394 -10.90335 -10.81347 -10.59002 -10.41459 -10.08321 -9.75764 -8.69550 -7.76307 -7.69103 -4.26305 -0.13652 1.62340 1.90668 1.98007 2.66558 2.68218 2.74833 3.32761 3.39128 3.46507 3.95413 4.28739 4.53347 4.80579 5.25565 5.49576 5.80749 5.87212 6.01148 6.13287 6.39972 6.43983 6.63921 6.73512 6.97293 7.31436 7.45904 7.54153 8.26079 8.27761 8.49621 9.30685 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.019355 B = 0.009295 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.330719 B = 3011.545070 C = 4445.534888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.270 3.730 3 C -0.197 4.197 4 C 0.031 3.969 5 C -0.254 4.254 6 C 0.065 3.935 7 N -0.005 5.005 8 O -0.213 6.213 9 O -0.207 6.207 10 C -0.077 4.077 11 C 0.149 3.851 12 N -0.450 5.450 13 C -0.305 4.305 14 H 0.133 0.867 15 C 0.040 3.960 16 N -0.790 5.790 17 Si 0.950 3.050 18 H -0.248 1.248 19 H -0.266 1.266 20 H -0.265 1.265 21 H 0.125 0.875 22 H 0.131 0.869 23 H 0.149 0.851 24 H 0.409 0.591 25 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 -0.227 -0.046 2.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.040 4.040 3 C -0.212 4.212 4 C 0.009 3.991 5 C -0.279 4.279 6 C -0.025 4.025 7 N 0.461 4.539 8 O -0.397 6.397 9 O -0.393 6.393 10 C -0.100 4.100 11 C 0.017 3.983 12 N -0.038 5.038 13 C -0.440 4.440 14 H 0.150 0.850 15 C -0.182 4.182 16 N -0.415 5.415 17 Si 0.771 3.229 18 H -0.171 1.171 19 H -0.190 1.190 20 H -0.190 1.190 21 H 0.143 0.857 22 H 0.149 0.851 23 H 0.166 0.834 24 H 0.246 0.754 25 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.259 -0.694 -0.238 0.778 hybrid contribution 0.676 -0.701 -0.274 1.012 sum 0.417 -1.395 -0.512 1.543 Atomic orbital electron populations 1.81158 1.12266 1.08268 1.14248 1.25639 0.92526 0.93399 0.92422 1.14741 0.83533 0.96514 1.26386 1.20284 0.91960 0.95001 0.91871 1.19657 0.93304 0.98146 1.16787 1.19951 0.74469 0.98287 1.09840 1.50581 1.05415 1.01288 0.96615 1.96209 1.70248 1.20559 1.52696 1.96186 1.71015 1.19681 1.52439 1.20315 0.92567 0.97309 0.99789 1.16743 0.89609 0.86674 1.05254 1.40281 1.10148 1.09813 1.43562 1.21520 0.94706 0.93853 1.33871 0.84953 1.27448 0.95396 1.00353 0.95048 1.68650 1.08634 1.32283 1.31887 0.85441 0.80741 0.77703 0.79005 1.17053 1.19045 1.19018 0.85666 0.85130 0.83357 0.75401 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -9.98 18.54 41.84 0.78 -9.20 15 2 C 0.27 5.24 14.10 -22.47 -0.32 4.92 15 3 C -0.20 -3.61 5.76 -106.63 -0.61 -4.23 15 4 C 0.03 0.50 9.75 -39.19 -0.38 0.12 15 5 C -0.25 -4.37 9.56 -39.58 -0.38 -4.75 15 6 C 0.06 1.23 6.88 -79.91 -0.55 0.68 15 7 N -0.01 -0.11 4.98 33.98 0.17 0.06 15 8 O -0.21 -4.47 19.13 -31.57 -0.60 -5.07 15 9 O -0.21 -4.27 19.13 -31.57 -0.60 -4.87 15 10 C -0.08 -1.45 8.80 -39.38 -0.35 -1.79 15 11 C 0.15 2.86 6.60 -83.56 -0.55 2.31 15 12 N -0.45 -9.13 5.20 -8.18 -0.04 -9.17 15 13 C -0.30 -6.10 9.79 -13.72 -0.13 -6.24 15 14 H 0.13 2.49 5.73 -52.48 -0.30 2.19 15 15 C 0.04 0.77 5.69 -15.15 -0.09 0.68 15 16 N -0.79 -16.25 13.09 56.00 0.73 -15.52 15 17 Si 0.95 14.87 29.65 -169.99 -5.04 9.83 15 18 H -0.25 -3.85 7.11 56.52 0.40 -3.45 15 19 H -0.27 -4.15 7.11 56.52 0.40 -3.75 15 20 H -0.27 -4.17 7.11 56.52 0.40 -3.77 15 21 H 0.13 1.68 8.06 -52.49 -0.42 1.26 15 22 H 0.13 2.10 7.56 -52.48 -0.40 1.70 15 23 H 0.15 2.73 5.47 -52.49 -0.29 2.44 15 24 H 0.41 8.70 6.85 -40.82 -0.28 8.42 15 25 H 0.31 5.65 8.26 -40.82 -0.34 5.31 15 LS Contribution 249.91 15.07 3.77 3.77 Total: -1.00 -23.10 249.91 -5.02 -28.12 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -0.82 Total: 10.36 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -3.36 Total: -8.30 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 1.64 Total: -33.83 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -1.21 Total: -9.95 kcal Atomic # 14 Polarization: 14.87 SS G_CDS: -5.04 Total: 9.83 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -23.10 -5.02 -28.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308916865.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.144 kcal (2) G-P(sol) polarization free energy of solvation -23.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds