Wall clock time and date at job start Mon Mar 30 2020 03:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.46807 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 120.00270 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00008 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.47353 * 125.62991 * 179.71764 * 13 11 10 15 15 C 1.54735 * 104.99079 * 177.49516 * 14 13 11 16 16 H 1.08997 * 110.77845 * 98.11920 * 15 14 13 17 17 O 1.42901 * 111.14301 * 221.83871 * 15 14 13 18 18 C 1.55132 * 101.79483 * 340.05940 * 15 14 13 19 19 O 1.42229 * 125.63574 * 0.02562 * 13 11 10 20 20 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 22 22 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 23 23 H 1.09003 * 110.33162 * 296.49142 * 14 13 11 24 24 H 1.08999 * 110.33215 * 58.72384 * 14 13 11 25 25 H 0.96703 * 113.99806 * 173.97113 * 17 15 14 26 26 H 1.08998 * 110.82140 * 277.07974 * 18 15 14 27 27 H 1.09003 * 110.82061 * 153.53030 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 2.4653 -7.7671 0.0057 15 6 3.8053 -8.5380 -0.0615 16 1 4.1142 -8.8638 0.9317 17 8 3.7168 -9.6484 -0.9567 18 6 4.7674 -7.4540 -0.6146 19 8 4.2632 -6.2479 0.0019 20 1 -0.4850 0.8401 0.0004 21 1 3.1244 -3.7314 -0.8895 22 1 3.1245 -3.7314 0.8906 23 1 1.9302 -8.0132 0.9229 24 1 1.8525 -7.9993 -0.8653 25 1 4.5570 -10.1050 -1.1012 26 1 4.6980 -7.3921 -1.7006 27 1 5.7929 -7.6497 -0.3013 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379354734.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:10 Heat of formation + Delta-G solvation = -94.978006 kcal Electronic energy + Delta-G solvation = -14040.751848 eV Core-core repulsion = 11312.550143 eV Total energy + Delta-G solvation = -2728.201705 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.23156 -39.59549 -37.34835 -34.60494 -33.62835 -32.21660 -30.22240 -27.70981 -26.24968 -23.03818 -21.92706 -19.93579 -18.96705 -18.42163 -17.48678 -16.96745 -16.89137 -16.35804 -15.73579 -15.70415 -15.31825 -15.08806 -14.48144 -14.18468 -13.86501 -13.50035 -13.20345 -12.87307 -12.65545 -12.48544 -12.09705 -11.77560 -11.31963 -11.14253 -11.06604 -10.35739 -9.98314 -8.71240 -8.36112 -6.15696 0.69914 1.28192 1.31931 1.44340 1.49033 1.60356 2.25520 2.43276 2.97895 3.15456 3.31195 3.33141 3.63265 3.86380 4.17315 4.19092 4.34602 4.45063 4.49061 4.53773 4.74202 5.14430 5.40312 6.01087 6.18529 6.76173 6.78461 7.04631 8.73115 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.062244 B = 0.005309 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.735452 B = 5273.249768 C = 5652.738046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.001 2.999 4 H -0.276 1.276 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.550 4.550 8 H 0.082 0.918 9 S -0.142 6.142 10 C -0.116 4.116 11 C 0.568 3.432 12 O -0.537 6.537 13 N -0.485 5.485 14 C 0.088 3.912 15 C 0.093 3.907 16 H 0.118 0.882 17 O -0.564 6.564 18 C -0.009 4.009 19 O -0.165 6.165 20 H 0.273 0.727 21 H 0.104 0.896 22 H 0.106 0.894 23 H 0.099 0.901 24 H 0.080 0.920 25 H 0.411 0.589 26 H 0.080 0.920 27 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.986 -17.140 -0.354 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.201 1.201 5 H -0.186 1.186 6 H -0.187 1.187 7 C -0.698 4.698 8 H 0.100 0.900 9 S 0.085 5.915 10 C -0.267 4.267 11 C 0.358 3.642 12 O -0.414 6.414 13 N -0.269 5.269 14 C -0.033 4.033 15 C 0.032 3.968 16 H 0.136 0.864 17 O -0.374 6.374 18 C -0.086 4.086 19 O -0.167 6.167 20 H 0.082 0.918 21 H 0.122 0.878 22 H 0.124 0.876 23 H 0.117 0.883 24 H 0.098 0.902 25 H 0.263 0.737 26 H 0.098 0.902 27 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 11.540 -16.939 -0.297 20.498 hybrid contribution 2.086 0.906 -0.146 2.279 sum 13.626 -16.033 -0.444 21.045 Atomic orbital electron populations 1.70170 1.07936 1.28826 1.47681 1.26151 0.96025 1.03312 0.93532 0.84973 0.77809 0.75500 0.79520 1.20116 1.18634 1.18677 1.23153 0.95340 0.91854 1.59405 0.90034 1.85437 1.09820 0.99128 1.97080 1.23227 1.03582 0.93277 1.06626 1.19608 0.84353 0.85202 0.75023 1.90765 1.14807 1.84511 1.51350 1.50561 0.95208 1.06110 1.75023 1.22593 0.98445 0.77743 1.04488 1.23346 0.91449 0.86710 0.95271 0.86446 1.86490 1.39652 1.44496 1.66727 1.25216 1.00855 0.83026 0.99550 1.91165 1.00745 1.42694 1.82062 0.91832 0.87762 0.87578 0.88337 0.90150 0.73669 0.90156 0.82003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.41 13.22 21.65 0.29 -56.12 15 2 C 0.01 0.85 5.49 84.86 0.47 1.32 15 3 Si 1.00 44.15 29.55 68.60 2.03 46.18 15 4 H -0.28 -11.77 7.11 99.48 0.71 -11.07 15 5 H -0.26 -10.97 7.11 99.48 0.71 -10.26 15 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 7 C -0.55 -32.27 9.50 67.96 0.65 -31.62 15 8 H 0.08 4.48 7.80 -2.92 -0.02 4.46 15 9 S -0.14 -8.14 20.57 -56.49 -1.16 -9.30 15 10 C -0.12 -5.13 5.81 71.24 0.41 -4.71 15 11 C 0.57 23.48 7.94 87.66 0.70 24.17 15 12 O -0.54 -25.96 16.19 -3.01 -0.05 -26.01 15 13 N -0.49 -15.24 4.00 -458.27 -1.83 -17.07 15 14 C 0.09 2.11 6.88 86.81 0.60 2.71 15 15 C 0.09 1.26 4.53 31.92 0.14 1.41 15 16 H 0.12 1.01 8.14 -2.39 -0.02 0.99 15 17 O -0.56 -6.74 13.43 -148.98 -2.00 -8.74 15 18 C -0.01 -0.13 7.70 72.71 0.56 0.43 15 19 O -0.17 -4.22 11.95 -40.21 -0.48 -4.70 15 20 H 0.27 15.65 8.31 -92.71 -0.77 14.88 15 21 H 0.10 4.32 8.14 -2.39 -0.02 4.30 15 22 H 0.11 4.40 8.14 -2.39 -0.02 4.38 15 23 H 0.10 2.25 8.14 -2.39 -0.02 2.23 15 24 H 0.08 2.13 8.07 -2.39 -0.02 2.11 15 25 H 0.41 0.39 9.11 -74.06 -0.67 -0.29 15 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 15 27 H 0.16 0.87 8.14 -2.39 -0.02 0.85 15 Total: -1.00 -79.43 260.25 0.83 -78.60 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 0.52 Total: 3.46 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 3.52 Total: -6.30 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -1.55 Total: -73.20 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -2.53 Total: -39.45 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.30 kcal Total: -79.43 0.83 -78.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379354734.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.378 kcal (2) G-P(sol) polarization free energy of solvation -79.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds