Wall clock time and date at job start Mon Mar 30 2020 03:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47912 * 110.99908 * 2 1 4 4 C 1.54600 * 102.62564 * 265.42523 * 3 2 1 5 5 C 1.51573 * 102.83093 * 334.44612 * 4 3 2 6 6 C 1.37915 * 131.56735 * 196.24723 * 5 4 3 7 7 C 1.38306 * 120.08458 * 179.60017 * 6 5 4 8 8 C 1.50693 * 120.06032 * 179.97438 * 7 6 5 9 9 N 1.46507 * 109.47084 * 269.98279 * 8 7 6 10 10 C 1.36937 * 120.00006 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99643 * 359.97438 * 10 9 8 12 12 C 1.38810 * 120.00163 * 179.97438 * 10 9 8 13 13 N 1.31621 * 119.99753 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99964 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46887 * 90.00292 * 14 12 10 16 16 H 1.48496 * 109.46787 * 209.99783 * 14 12 10 17 17 H 1.48499 * 109.47403 * 330.00061 * 14 12 10 18 18 C 1.38309 * 119.87981 * 359.93191 * 7 6 5 19 19 C 1.37910 * 120.26409 * 0.40461 * 18 7 6 20 20 C 1.38969 * 107.95062 * 16.02043 * 5 4 3 21 21 H 1.08996 * 109.46899 * 59.87812 * 1 2 3 22 22 H 1.08997 * 109.46918 * 179.87262 * 1 2 3 23 23 H 1.09000 * 109.47297 * 299.87907 * 1 2 3 24 24 H 1.09003 * 110.77456 * 147.14341 * 3 2 1 25 25 H 1.09002 * 110.77539 * 23.71189 * 3 2 1 26 26 H 1.08997 * 110.74264 * 216.10844 * 4 3 2 27 27 H 1.09007 * 110.89648 * 92.85046 * 4 3 2 28 28 H 1.07997 * 119.96040 * 359.58828 * 6 5 4 29 29 H 1.09002 * 109.47537 * 29.97728 * 8 7 6 30 30 H 1.09000 * 109.47438 * 149.98051 * 8 7 6 31 31 H 0.96998 * 120.00074 * 359.97438 * 9 8 7 32 32 H 0.96999 * 119.99844 * 179.97438 * 13 12 10 33 33 H 1.08002 * 119.86327 * 180.12042 * 18 7 6 34 34 H 1.07996 * 119.89803 * 179.76117 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 2.2325 1.6532 -1.5038 5 6 2.4320 0.2618 -2.0709 6 6 2.9601 -0.1709 -3.2692 7 6 3.0374 -1.5241 -3.5444 8 6 3.6139 -1.9962 -4.8542 9 7 2.5431 -2.1056 -5.8480 10 6 2.8303 -2.5201 -7.1212 11 1 3.8463 -2.7659 -7.3927 12 6 1.8156 -2.6242 -8.0627 13 7 0.5774 -2.3251 -7.7315 14 14 2.2075 -3.1889 -9.7996 15 1 2.0926 -4.6675 -9.8772 16 1 1.2504 -2.5676 -10.7499 17 1 3.5910 -2.7807 -10.1526 18 6 2.5853 -2.4432 -2.6150 19 6 2.0500 -2.0155 -1.4181 20 6 1.9709 -0.6534 -1.1323 21 1 -0.3633 0.5157 -0.8889 22 1 -0.3633 -1.0276 -0.0023 23 1 -0.3634 0.5119 0.8911 24 1 2.9369 1.4350 0.5529 25 1 1.2665 2.0762 0.4098 26 1 3.1244 2.2621 -1.6520 27 1 1.3615 2.1315 -1.9521 28 1 3.3136 0.5478 -3.9937 29 1 4.3602 -1.2816 -5.2015 30 1 4.0815 -2.9710 -4.7151 31 1 1.6306 -1.8852 -5.6040 32 1 -0.1316 -2.3976 -8.3895 33 1 2.6476 -3.4999 -2.8294 34 1 1.6953 -2.7382 -0.6983 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380334599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:56 Heat of formation + Delta-G solvation = 51.273601 kcal Electronic energy + Delta-G solvation = -15623.458696 eV Core-core repulsion = 13135.539837 eV Total energy + Delta-G solvation = -2487.918859 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.58571 -37.14887 -34.26690 -32.22360 -31.50254 -29.33034 -28.75084 -26.19868 -24.88456 -22.95247 -22.16354 -20.84464 -19.99622 -17.17288 -16.47073 -15.97340 -15.31581 -14.83626 -14.39675 -13.93012 -13.61066 -13.31794 -13.15829 -12.80417 -12.76986 -12.47720 -12.13323 -11.89517 -11.70027 -11.29190 -11.00730 -10.82295 -10.66882 -10.55008 -10.04752 -9.75604 -9.19028 -8.87870 -8.48923 -7.66827 -6.91264 -5.74652 -3.04033 1.58360 1.71499 3.44813 3.49548 3.51564 3.69373 4.01122 4.62686 4.64619 4.82645 4.93833 5.15871 5.28093 5.39348 5.46994 5.49046 5.56573 5.61927 5.71827 5.76859 5.83836 5.96546 6.02393 6.21812 6.23646 6.49040 6.60384 6.63801 6.68334 6.92899 7.01678 7.18661 7.46930 7.70767 8.43406 9.54852 10.11966 10.47964 11.48043 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.045628 B = 0.005157 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.504586 B = 5428.353982 C = 5454.277197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.497 5.497 3 C 0.050 3.950 4 C -0.109 4.109 5 C -0.143 4.143 6 C -0.074 4.074 7 C -0.083 4.083 8 C 0.189 3.811 9 N -0.727 5.727 10 C -0.241 4.241 11 H 0.071 0.929 12 C -0.013 4.013 13 N -0.933 5.933 14 Si 0.908 3.092 15 H -0.289 1.289 16 H -0.291 1.291 17 H -0.282 1.282 18 C -0.090 4.090 19 C -0.112 4.112 20 C 0.072 3.928 21 H 0.033 0.967 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.027 0.973 30 H 0.029 0.971 31 H 0.385 0.615 32 H 0.255 0.745 33 H 0.127 0.873 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.053 6.333 15.702 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.214 5.214 3 C -0.077 4.077 4 C -0.147 4.147 5 C -0.146 4.146 6 C -0.093 4.093 7 C -0.084 4.084 8 C 0.062 3.938 9 N -0.371 5.371 10 C -0.372 4.372 11 H 0.089 0.911 12 C -0.209 4.209 13 N -0.581 5.581 14 Si 0.739 3.261 15 H -0.217 1.217 16 H -0.218 1.218 17 H -0.207 1.207 18 C -0.109 4.109 19 C -0.131 4.131 20 C -0.024 4.024 21 H 0.052 0.948 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.138 0.862 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.219 0.781 32 H 0.065 0.935 33 H 0.145 0.855 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.258 6.037 16.055 17.300 hybrid contribution -0.463 0.159 -1.611 1.684 sum 1.795 6.196 14.444 15.819 Atomic orbital electron populations 1.22471 0.85886 1.02782 1.00843 1.60236 1.08304 1.14529 1.38369 1.23140 1.00998 0.88074 0.95494 1.21638 1.02678 0.94642 0.95731 1.20862 1.03622 0.95084 0.94991 1.20336 0.98571 0.95485 0.94891 1.20197 0.98888 0.92677 0.96631 1.19636 0.91663 0.97494 0.84989 1.42367 1.05905 1.81120 1.07743 1.19261 0.93857 1.36943 0.87100 0.91060 1.24753 0.95381 1.02427 0.98377 1.69680 0.99340 1.54977 1.34143 0.86171 0.77175 0.78263 0.84473 1.21683 1.21784 1.20718 1.20902 0.97491 0.99895 0.92575 1.20393 1.02345 0.92750 0.97649 1.19432 0.99828 0.93622 0.89494 0.94793 0.90998 0.91091 0.89493 0.90051 0.89850 0.90357 0.86181 0.95506 0.95353 0.78109 0.93517 0.85488 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.29 60.07 0.56 0.85 16 2 N -0.50 -6.46 5.33 -176.84 -0.94 -7.40 16 3 C 0.05 0.53 7.00 -2.43 -0.02 0.51 16 4 C -0.11 -1.30 6.97 -26.61 -0.19 -1.49 16 5 C -0.14 -2.22 6.23 -104.04 -0.65 -2.87 16 6 C -0.07 -1.27 9.69 -39.67 -0.38 -1.66 16 7 C -0.08 -1.54 5.25 -104.57 -0.55 -2.09 16 8 C 0.19 4.00 6.39 -5.19 -0.03 3.97 16 9 N -0.73 -19.06 5.59 -61.08 -0.34 -19.40 16 10 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 11 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 12 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 13 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 14 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 18 C -0.09 -1.52 9.68 -39.68 -0.38 -1.90 16 19 C -0.11 -1.73 10.07 -39.27 -0.40 -2.13 16 20 C 0.07 1.10 5.59 -83.41 -0.47 0.63 16 21 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 24 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.08 0.68 7.76 -51.93 -0.40 0.28 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 29 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.03 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.39 10.78 7.66 -40.82 -0.31 10.47 16 32 H 0.25 7.57 8.31 -40.82 -0.34 7.24 16 33 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 287.23 15.07 4.33 4.33 Total: -1.00 -31.57 287.23 -8.91 -40.48 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.90 Total: 6.11 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -2.75 Total: -13.66 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.56 Total: -54.84 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.57 -8.91 -40.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380334599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.750 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds