Wall clock time and date at job start Mon Mar 30 2020 03:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47912 * 110.99908 * 2 1 4 4 C 1.54600 * 102.62564 * 265.42523 * 3 2 1 5 5 C 1.51573 * 102.83093 * 334.44612 * 4 3 2 6 6 C 1.37915 * 131.56735 * 196.24723 * 5 4 3 7 7 C 1.38306 * 120.08458 * 179.60017 * 6 5 4 8 8 C 1.50693 * 120.06032 * 179.97438 * 7 6 5 9 9 N 1.46507 * 109.47084 * 269.98279 * 8 7 6 10 10 C 1.36937 * 120.00006 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99643 * 359.97438 * 10 9 8 12 12 C 1.38810 * 120.00163 * 179.97438 * 10 9 8 13 13 N 1.31621 * 119.99753 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99964 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46887 * 90.00292 * 14 12 10 16 16 H 1.48496 * 109.46787 * 209.99783 * 14 12 10 17 17 H 1.48499 * 109.47403 * 330.00061 * 14 12 10 18 18 C 1.38309 * 119.87981 * 359.93191 * 7 6 5 19 19 C 1.37910 * 120.26409 * 0.40461 * 18 7 6 20 20 C 1.38969 * 107.95062 * 16.02043 * 5 4 3 21 21 H 1.08996 * 109.46899 * 59.87812 * 1 2 3 22 22 H 1.08997 * 109.46918 * 179.87262 * 1 2 3 23 23 H 1.09000 * 109.47297 * 299.87907 * 1 2 3 24 24 H 1.09003 * 110.77456 * 147.14341 * 3 2 1 25 25 H 1.09002 * 110.77539 * 23.71189 * 3 2 1 26 26 H 1.08997 * 110.74264 * 216.10844 * 4 3 2 27 27 H 1.09007 * 110.89648 * 92.85046 * 4 3 2 28 28 H 1.07997 * 119.96040 * 359.58828 * 6 5 4 29 29 H 1.09002 * 109.47537 * 29.97728 * 8 7 6 30 30 H 1.09000 * 109.47438 * 149.98051 * 8 7 6 31 31 H 0.96998 * 120.00074 * 359.97438 * 9 8 7 32 32 H 0.96999 * 119.99844 * 179.97438 * 13 12 10 33 33 H 1.08002 * 119.86327 * 180.12042 * 18 7 6 34 34 H 1.07996 * 119.89803 * 179.76117 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 2.2325 1.6532 -1.5038 5 6 2.4320 0.2618 -2.0709 6 6 2.9601 -0.1709 -3.2692 7 6 3.0374 -1.5241 -3.5444 8 6 3.6139 -1.9962 -4.8542 9 7 2.5431 -2.1056 -5.8480 10 6 2.8303 -2.5201 -7.1212 11 1 3.8463 -2.7659 -7.3927 12 6 1.8156 -2.6242 -8.0627 13 7 0.5774 -2.3251 -7.7315 14 14 2.2075 -3.1889 -9.7996 15 1 2.0926 -4.6675 -9.8772 16 1 1.2504 -2.5676 -10.7499 17 1 3.5910 -2.7807 -10.1526 18 6 2.5853 -2.4432 -2.6150 19 6 2.0500 -2.0155 -1.4181 20 6 1.9709 -0.6534 -1.1323 21 1 -0.3633 0.5157 -0.8889 22 1 -0.3633 -1.0276 -0.0023 23 1 -0.3634 0.5119 0.8911 24 1 2.9369 1.4350 0.5529 25 1 1.2665 2.0762 0.4098 26 1 3.1244 2.2621 -1.6520 27 1 1.3615 2.1315 -1.9521 28 1 3.3136 0.5478 -3.9937 29 1 4.3602 -1.2816 -5.2015 30 1 4.0815 -2.9710 -4.7151 31 1 1.6306 -1.8852 -5.6040 32 1 -0.1316 -2.3976 -8.3895 33 1 2.6476 -3.4999 -2.8294 34 1 1.6953 -2.7382 -0.6983 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380334599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:56 Heat of formation + Delta-G solvation = 31.161181 kcal Electronic energy + Delta-G solvation = -15624.330836 eV Core-core repulsion = 13135.539837 eV Total energy + Delta-G solvation = -2488.790999 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.69960 -38.44949 -36.14066 -33.39526 -33.30115 -30.88449 -29.89250 -27.53006 -26.31667 -24.59493 -23.58206 -21.90711 -21.35886 -19.27400 -17.54845 -17.11310 -16.74487 -16.30602 -16.05606 -15.23848 -15.08278 -14.94940 -14.39812 -14.12230 -13.95990 -13.79928 -13.46020 -13.06040 -12.95206 -12.77679 -12.75637 -12.30760 -12.11199 -11.96446 -11.85566 -11.72679 -10.98937 -10.33504 -9.74493 -9.04059 -8.83911 -7.96143 -5.26770 0.29983 0.44292 1.47195 1.49592 1.58179 2.52124 2.66116 2.80818 3.36771 3.60263 3.83711 3.98336 4.13272 4.14090 4.23238 4.27257 4.44866 4.52269 4.56792 4.63193 4.72829 4.81777 4.87973 4.92468 4.98149 5.03689 5.22061 5.36167 5.44710 5.46833 5.73080 5.78412 5.96310 6.24366 6.29157 7.30881 8.03540 8.29701 9.27402 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.045628 B = 0.005157 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.504586 B = 5428.353982 C = 5454.277197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.503 5.503 3 C 0.052 3.948 4 C -0.107 4.107 5 C -0.152 4.152 6 C -0.086 4.086 7 C -0.106 4.106 8 C 0.192 3.808 9 N -0.739 5.739 10 C -0.249 4.249 11 H 0.079 0.921 12 C -0.075 4.075 13 N -0.971 5.971 14 Si 0.978 3.022 15 H -0.285 1.285 16 H -0.295 1.295 17 H -0.268 1.268 18 C -0.097 4.097 19 C -0.115 4.115 20 C 0.073 3.927 21 H 0.025 0.975 22 H 0.067 0.933 23 H 0.100 0.900 24 H 0.096 0.904 25 H 0.110 0.890 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.029 0.971 30 H 0.033 0.967 31 H 0.372 0.628 32 H 0.252 0.748 33 H 0.130 0.870 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.283 7.046 16.962 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.221 5.221 3 C -0.074 4.074 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.105 4.105 7 C -0.107 4.107 8 C 0.066 3.934 9 N -0.382 5.382 10 C -0.380 4.380 11 H 0.097 0.903 12 C -0.267 4.267 13 N -0.622 5.622 14 Si 0.807 3.193 15 H -0.212 1.212 16 H -0.221 1.221 17 H -0.192 1.192 18 C -0.116 4.116 19 C -0.135 4.135 20 C -0.023 4.023 21 H 0.044 0.956 22 H 0.086 0.914 23 H 0.118 0.882 24 H 0.114 0.886 25 H 0.128 0.872 26 H 0.117 0.883 27 H 0.101 0.899 28 H 0.135 0.865 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.204 0.796 32 H 0.061 0.939 33 H 0.147 0.853 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.530 6.755 17.344 18.784 hybrid contribution -0.515 -0.022 -1.864 1.934 sum 2.015 6.733 15.480 17.001 Atomic orbital electron populations 1.22552 0.84641 1.02977 1.01866 1.60283 1.09313 1.15787 1.36745 1.23308 1.02314 0.87231 0.94587 1.21743 1.03598 0.92705 0.96472 1.21257 1.02592 0.97410 0.94229 1.20382 0.99308 0.94962 0.95892 1.20000 1.01041 0.93692 0.95951 1.19675 0.90560 0.97680 0.85464 1.42564 1.06398 1.80998 1.08191 1.19699 0.94204 1.35941 0.88190 0.90321 1.25626 0.95246 1.03249 1.02576 1.69848 1.00299 1.56731 1.35326 0.85073 0.77370 0.77648 0.79252 1.21207 1.22123 1.19238 1.20970 0.97748 0.99844 0.93039 1.20591 1.01851 0.93659 0.97399 1.19730 0.98814 0.93640 0.90151 0.95601 0.91368 0.88188 0.88556 0.87173 0.88316 0.89898 0.86510 0.95334 0.94948 0.79612 0.93949 0.85250 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.29 127.69 1.19 1.68 16 2 N -0.50 -11.73 5.33 -713.40 -3.80 -15.53 16 3 C 0.05 0.93 7.00 86.65 0.61 1.53 16 4 C -0.11 -2.31 6.97 30.67 0.21 -2.10 16 5 C -0.15 -4.57 6.23 -19.49 -0.12 -4.69 16 6 C -0.09 -3.01 9.69 22.21 0.22 -2.79 16 7 C -0.11 -3.99 5.25 -19.83 -0.10 -4.10 16 8 C 0.19 8.29 6.39 85.63 0.55 8.84 16 9 N -0.74 -39.60 5.59 -347.17 -1.94 -41.54 16 10 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 11 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 12 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 13 N -0.97 -61.01 13.06 21.65 0.28 -60.73 16 14 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 15 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 16 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 C -0.10 -3.30 9.68 22.21 0.21 -3.09 16 19 C -0.12 -3.47 10.07 22.47 0.23 -3.25 16 20 C 0.07 2.12 5.59 38.29 0.21 2.33 16 21 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 22 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.10 1.38 8.11 -2.39 -0.02 1.37 16 24 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.11 1.36 7.76 -2.39 -0.02 1.34 16 26 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 29 H 0.03 1.22 8.09 -2.39 -0.02 1.20 16 30 H 0.03 1.37 8.09 -2.39 -0.02 1.35 16 31 H 0.37 21.52 7.66 -92.71 -0.71 20.81 16 32 H 0.25 15.24 8.31 -92.71 -0.77 14.46 16 33 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 34 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -67.45 287.23 1.44 -66.01 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.37 Total: 26.06 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 4.50 Total: -23.04 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -5.46 Total: -117.80 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -67.45 1.44 -66.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380334599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.168 kcal (2) G-P(sol) polarization free energy of solvation -67.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds