Wall clock time and date at job start Mon Mar 30 2020 02:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.46955 * 2 1 4 4 H 1.08998 * 115.56412 * 29.31008 * 3 2 1 5 5 C 1.52997 * 117.49722 * 243.61715 * 3 2 1 6 6 C 1.52989 * 60.00263 * 252.51238 * 5 3 2 7 7 H 1.09006 * 117.49988 * 107.49259 * 6 5 3 8 8 N 1.46499 * 117.49974 * 252.51192 * 6 5 3 9 9 C 1.32217 * 120.00143 * 188.62046 * 8 6 5 10 10 C 1.46912 * 120.83488 * 0.02562 * 9 8 6 11 11 C 1.34373 * 119.37317 * 179.97438 * 10 9 8 12 12 N 1.36431 * 121.21867 * 359.97438 * 11 10 9 13 13 H 0.97001 * 119.08537 * 179.97438 * 12 11 10 14 14 C 1.37765 * 121.81943 * 0.02562 * 12 11 10 15 15 C 1.40184 * 119.74204 * 179.97438 * 14 12 11 16 16 H 1.07995 * 119.99741 * 203.78899 * 15 14 12 17 17 C 1.40346 * 119.99931 * 23.79178 * 15 14 12 18 18 N 1.30592 * 120.00027 * 16.30813 * 17 15 14 19 19 Si 1.86795 * 120.00091 * 196.31146 * 17 15 14 20 20 H 1.48497 * 109.47301 * 94.62653 * 19 17 15 21 21 H 1.48499 * 109.47386 * 214.62723 * 19 17 15 22 22 H 1.48504 * 109.47220 * 334.63026 * 19 17 15 23 23 C 1.39069 * 120.51377 * 359.69469 * 14 12 11 24 24 H 1.09005 * 109.47690 * 300.00069 * 1 2 3 25 25 H 1.08998 * 109.47563 * 60.00428 * 1 2 3 26 26 H 1.09001 * 109.46939 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47786 * 239.99799 * 2 1 3 28 28 H 1.09008 * 109.47374 * 119.99515 * 2 1 3 29 29 H 1.09005 * 117.49996 * 145.02041 * 5 3 2 30 30 H 1.09005 * 117.50165 * 0.02562 * 5 3 2 31 31 H 1.08005 * 120.31478 * 359.97438 * 10 9 8 32 32 H 1.07997 * 119.39555 * 180.02562 * 11 10 9 33 33 H 0.97002 * 120.00019 * 179.97438 * 18 17 15 34 34 H 1.07999 * 120.62827 * 180.27885 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1718 0.4813 5 6 2.8439 1.9076 -1.2158 6 6 3.5500 1.6580 0.1183 7 1 4.1803 0.7720 0.1961 8 7 4.0095 2.8285 0.8698 9 6 4.7721 2.6706 1.9383 10 6 5.1701 1.3297 2.3879 11 6 5.9462 1.2033 3.4774 12 7 6.3717 2.2969 4.1733 13 1 6.9308 2.1697 4.9558 14 6 6.0285 3.5766 3.7961 15 6 6.4897 4.6693 4.5435 16 1 5.9529 5.6061 4.5179 17 6 7.6490 4.5458 5.3248 18 7 8.4699 3.5506 5.1223 19 14 8.0176 5.8049 6.6545 20 1 7.5046 5.3127 7.9582 21 1 9.4851 6.0125 6.7465 22 1 7.3561 7.0906 6.3158 23 6 5.2327 3.7932 2.6763 24 1 -0.3635 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.7212 2.9428 -1.5344 30 1 3.0093 1.1859 -2.0159 31 1 4.8419 0.4539 1.8477 32 1 6.2394 0.2178 3.8080 33 1 9.2714 3.4655 5.6621 34 1 4.9662 4.7959 2.3763 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380344414.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:00 Heat of formation + Delta-G solvation = 43.385820 kcal Electronic energy + Delta-G solvation = -15352.918360 eV Core-core repulsion = 12864.657461 eV Total energy + Delta-G solvation = -2488.260899 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.58729 -37.21012 -34.32900 -33.10342 -31.33149 -30.58463 -27.92066 -26.08037 -23.50530 -22.02284 -21.32250 -20.01576 -19.36931 -18.00997 -16.63644 -15.61962 -15.16952 -14.76172 -14.23238 -13.94957 -13.47358 -13.04149 -12.82053 -12.47675 -12.07546 -11.88154 -11.69457 -11.57646 -11.14905 -11.03810 -10.88148 -10.72482 -10.58821 -10.50336 -10.21248 -9.73419 -9.34813 -8.80131 -8.24258 -7.55293 -7.29995 -5.93674 -4.78747 2.57353 2.71744 2.87846 2.93230 3.12518 3.64111 4.20197 4.54393 4.74754 5.09459 5.32467 5.45460 5.47833 5.58705 5.68349 5.75942 5.99504 6.12749 6.17018 6.26627 6.34873 6.41102 6.46846 6.56273 6.69048 6.76757 6.80530 6.88694 6.94595 7.39506 7.67401 7.75778 7.96759 8.25494 8.28243 8.78849 8.91359 9.69920 9.75094 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.052159 B = 0.004927 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.692801 B = 5682.180152 C = 5826.513451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.168 4.168 4 H 0.096 0.904 5 C -0.174 4.174 6 C 0.047 3.953 7 H 0.067 0.933 8 N -0.643 5.643 9 C 0.285 3.715 10 C -0.296 4.296 11 C 0.124 3.876 12 N -0.601 5.601 13 H 0.413 0.587 14 C 0.332 3.668 15 C -0.467 4.467 16 H 0.104 0.896 17 C 0.077 3.923 18 N -0.814 5.814 19 Si 0.925 3.075 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.256 1.256 23 C -0.356 4.356 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.131 0.869 33 H 0.292 0.708 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 -5.339 0.624 6.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.188 4.188 4 H 0.114 0.886 5 C -0.212 4.212 6 C -0.066 4.066 7 H 0.085 0.915 8 N -0.369 5.369 9 C 0.124 3.876 10 C -0.326 4.326 11 C -0.005 4.005 12 N -0.212 5.212 13 H 0.253 0.747 14 C 0.223 3.777 15 C -0.500 4.500 16 H 0.122 0.878 17 C -0.142 4.142 18 N -0.442 5.442 19 Si 0.748 3.252 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.179 1.179 23 C -0.385 4.385 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.148 0.852 33 H 0.103 0.897 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.400 -4.826 0.077 5.905 hybrid contribution 0.797 -0.572 1.001 1.402 sum -2.603 -5.399 1.078 6.090 Atomic orbital electron populations 1.21730 0.96162 1.00709 1.01707 1.21079 0.95309 0.95327 1.01042 1.22574 0.96386 0.96268 1.03531 0.88568 1.22982 1.05856 1.01171 0.91161 1.22118 0.91741 0.95135 0.97635 0.91540 1.73237 1.26929 1.23462 1.13309 1.20203 0.87597 0.90067 0.89777 1.22312 1.09770 0.98791 1.01773 1.21257 0.95042 0.90746 0.93492 1.42057 1.47219 1.03878 1.28006 0.74686 1.17630 0.87849 0.82366 0.89872 1.19541 1.08390 0.98910 1.23126 0.87844 1.26198 0.94405 0.96797 0.96775 1.69352 1.10102 1.30004 1.34692 0.85991 0.78379 0.80975 0.79824 1.19017 1.19947 1.17942 1.20224 1.19958 0.96562 1.01741 0.92872 0.92896 0.93373 0.92591 0.92363 0.89417 0.90298 0.86759 0.85159 0.89670 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.87 37.15 0.37 -1.46 16 2 C -0.09 -1.33 6.22 -26.73 -0.17 -1.50 16 3 C -0.17 -3.08 5.66 -90.62 -0.51 -3.59 16 4 H 0.10 1.89 8.07 -51.93 -0.42 1.48 16 5 C -0.17 -3.21 10.10 -26.74 -0.27 -3.48 16 6 C 0.05 1.01 5.71 -67.94 -0.39 0.62 16 7 H 0.07 1.39 6.34 -51.93 -0.33 1.06 16 8 N -0.64 -16.25 10.87 -50.79 -0.55 -16.81 16 9 C 0.28 7.19 6.81 -82.74 -0.56 6.63 16 10 C -0.30 -6.49 9.37 -37.44 -0.35 -6.84 16 11 C 0.12 2.47 11.15 -16.87 -0.19 2.28 16 12 N -0.60 -13.16 4.88 -10.83 -0.05 -13.21 16 13 H 0.41 8.59 6.40 -40.82 -0.26 8.33 16 14 C 0.33 8.15 6.35 -84.16 -0.53 7.61 16 15 C -0.47 -11.07 9.03 -38.06 -0.34 -11.41 16 16 H 0.10 2.40 7.90 -52.49 -0.41 1.98 16 17 C 0.08 1.66 5.18 -17.29 -0.09 1.57 16 18 N -0.81 -17.74 11.14 55.57 0.62 -17.12 16 19 Si 0.92 16.34 29.59 -169.99 -5.03 11.31 16 20 H -0.27 -4.60 7.11 56.52 0.40 -4.19 16 21 H -0.27 -4.81 7.11 56.52 0.40 -4.40 16 22 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 23 C -0.36 -9.23 9.83 -37.82 -0.37 -9.60 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.77 7.87 -51.93 -0.41 0.36 16 28 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 29 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 30 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 31 H 0.11 2.29 6.26 -52.48 -0.33 1.96 16 32 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.29 5.73 8.29 -40.82 -0.34 5.39 16 34 H 0.11 3.00 8.06 -52.49 -0.42 2.58 16 LS Contribution 289.08 15.07 4.36 4.36 Total: -1.00 -26.84 289.08 -8.74 -35.59 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -4.67 Total: 15.06 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -3.41 Total: -19.18 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.01 Total: -47.14 kcal Atomic # 14 Polarization: 16.34 SS G_CDS: -5.03 Total: 11.31 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.84 -8.74 -35.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380344414.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.973 kcal (2) G-P(sol) polarization free energy of solvation -26.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds