Wall clock time and date at job start Mon Mar 30 2020 02:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.46955 * 2 1 4 4 H 1.08998 * 115.56412 * 29.31008 * 3 2 1 5 5 C 1.52997 * 117.49722 * 243.61715 * 3 2 1 6 6 C 1.52989 * 60.00263 * 252.51238 * 5 3 2 7 7 H 1.09006 * 117.49988 * 107.49259 * 6 5 3 8 8 N 1.46499 * 117.49974 * 252.51192 * 6 5 3 9 9 C 1.32217 * 120.00143 * 188.62046 * 8 6 5 10 10 C 1.46912 * 120.83488 * 0.02562 * 9 8 6 11 11 C 1.34373 * 119.37317 * 179.97438 * 10 9 8 12 12 N 1.36431 * 121.21867 * 359.97438 * 11 10 9 13 13 H 0.97001 * 119.08537 * 179.97438 * 12 11 10 14 14 C 1.37765 * 121.81943 * 0.02562 * 12 11 10 15 15 C 1.40184 * 119.74204 * 179.97438 * 14 12 11 16 16 H 1.07995 * 119.99741 * 203.78899 * 15 14 12 17 17 C 1.40346 * 119.99931 * 23.79178 * 15 14 12 18 18 N 1.30592 * 120.00027 * 16.30813 * 17 15 14 19 19 Si 1.86795 * 120.00091 * 196.31146 * 17 15 14 20 20 H 1.48497 * 109.47301 * 94.62653 * 19 17 15 21 21 H 1.48499 * 109.47386 * 214.62723 * 19 17 15 22 22 H 1.48504 * 109.47220 * 334.63026 * 19 17 15 23 23 C 1.39069 * 120.51377 * 359.69469 * 14 12 11 24 24 H 1.09005 * 109.47690 * 300.00069 * 1 2 3 25 25 H 1.08998 * 109.47563 * 60.00428 * 1 2 3 26 26 H 1.09001 * 109.46939 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47786 * 239.99799 * 2 1 3 28 28 H 1.09008 * 109.47374 * 119.99515 * 2 1 3 29 29 H 1.09005 * 117.49996 * 145.02041 * 5 3 2 30 30 H 1.09005 * 117.50165 * 0.02562 * 5 3 2 31 31 H 1.08005 * 120.31478 * 359.97438 * 10 9 8 32 32 H 1.07997 * 119.39555 * 180.02562 * 11 10 9 33 33 H 0.97002 * 120.00019 * 179.97438 * 18 17 15 34 34 H 1.07999 * 120.62827 * 180.27885 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1718 0.4813 5 6 2.8439 1.9076 -1.2158 6 6 3.5500 1.6580 0.1183 7 1 4.1803 0.7720 0.1961 8 7 4.0095 2.8285 0.8698 9 6 4.7721 2.6706 1.9383 10 6 5.1701 1.3297 2.3879 11 6 5.9462 1.2033 3.4774 12 7 6.3717 2.2969 4.1733 13 1 6.9308 2.1697 4.9558 14 6 6.0285 3.5766 3.7961 15 6 6.4897 4.6693 4.5435 16 1 5.9529 5.6061 4.5179 17 6 7.6490 4.5458 5.3248 18 7 8.4699 3.5506 5.1223 19 14 8.0176 5.8049 6.6545 20 1 7.5046 5.3127 7.9582 21 1 9.4851 6.0125 6.7465 22 1 7.3561 7.0906 6.3158 23 6 5.2327 3.7932 2.6763 24 1 -0.3635 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.7212 2.9428 -1.5344 30 1 3.0093 1.1859 -2.0159 31 1 4.8419 0.4539 1.8477 32 1 6.2394 0.2178 3.8080 33 1 9.2714 3.4655 5.6621 34 1 4.9662 4.7959 2.3763 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380344414.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:00 Heat of formation + Delta-G solvation = 27.975934 kcal Electronic energy + Delta-G solvation = -15353.586583 eV Core-core repulsion = 12864.657461 eV Total energy + Delta-G solvation = -2488.929122 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.32656 -38.73187 -36.04352 -34.77030 -32.67339 -32.31181 -29.65165 -27.86664 -24.71209 -23.73439 -23.02968 -21.46392 -20.99555 -19.76239 -18.40007 -17.29004 -16.76337 -16.39530 -15.52510 -15.45047 -14.97514 -14.61749 -14.45494 -14.03757 -13.49788 -13.30958 -13.14978 -12.95595 -12.82377 -12.48229 -12.43050 -12.35659 -12.05050 -11.89826 -11.81112 -11.34260 -10.84771 -10.43941 -10.00303 -9.33242 -8.98881 -7.71285 -6.65980 0.92873 1.03853 1.42223 1.56118 1.59499 2.16257 2.50510 2.87273 3.13480 3.55435 3.74753 4.07045 4.11969 4.22194 4.32419 4.49205 4.63269 4.68743 4.80068 4.89624 4.93103 4.96598 5.03029 5.10376 5.14907 5.20980 5.30370 5.31486 5.53792 5.63691 5.82527 5.98280 6.08254 6.44950 6.50027 6.98353 7.18105 7.96196 8.03382 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.052159 B = 0.004927 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.692801 B = 5682.180152 C = 5826.513451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.152 4.152 4 H 0.075 0.925 5 C -0.162 4.162 6 C 0.014 3.986 7 H 0.072 0.928 8 N -0.682 5.682 9 C 0.263 3.737 10 C -0.316 4.316 11 C 0.139 3.861 12 N -0.601 5.601 13 H 0.419 0.581 14 C 0.323 3.677 15 C -0.495 4.495 16 H 0.095 0.905 17 C 0.050 3.950 18 N -0.822 5.822 19 Si 0.997 3.003 20 H -0.253 1.253 21 H -0.264 1.264 22 H -0.264 1.264 23 C -0.403 4.403 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.186 0.814 33 H 0.307 0.693 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.565 -7.114 1.638 7.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.172 4.172 4 H 0.093 0.907 5 C -0.200 4.200 6 C -0.099 4.099 7 H 0.089 0.911 8 N -0.409 5.409 9 C 0.102 3.898 10 C -0.345 4.345 11 C 0.009 3.991 12 N -0.212 5.212 13 H 0.260 0.740 14 C 0.213 3.787 15 C -0.527 4.527 16 H 0.113 0.887 17 C -0.168 4.168 18 N -0.449 5.449 19 Si 0.817 3.183 20 H -0.177 1.177 21 H -0.189 1.189 22 H -0.188 1.188 23 C -0.432 4.432 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.128 0.872 31 H 0.150 0.850 32 H 0.203 0.797 33 H 0.119 0.881 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.817 -6.633 1.071 7.286 hybrid contribution 0.677 -0.001 0.682 0.961 sum -2.140 -6.634 1.753 7.188 Atomic orbital electron populations 1.21705 0.94369 1.02274 1.01633 1.21094 0.96830 0.92518 1.01860 1.22602 0.93976 0.98201 1.02393 0.90698 1.23057 1.04414 1.01331 0.91171 1.22251 0.93725 0.94495 0.99471 0.91091 1.73095 1.27365 1.26463 1.13941 1.20402 0.87996 0.91497 0.89936 1.22366 1.11263 0.97650 1.03220 1.21949 0.92931 0.92142 0.92029 1.42065 1.47320 1.03474 1.28324 0.74033 1.17720 0.87533 0.83980 0.89420 1.19745 1.09719 0.98746 1.24451 0.88691 1.26928 0.93244 0.98770 0.97836 1.69327 1.10295 1.30523 1.34751 0.84933 0.78438 0.77926 0.77042 1.17694 1.18858 1.18784 1.20159 1.23145 0.95892 1.03998 0.93591 0.92429 0.90961 0.90859 0.92409 0.90805 0.87205 0.85032 0.79684 0.88134 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.87 71.98 0.71 -2.54 16 2 C -0.09 -2.35 6.22 30.59 0.19 -2.16 16 3 C -0.15 -5.53 5.66 -10.79 -0.06 -5.59 16 4 H 0.07 3.02 8.07 -2.39 -0.02 3.00 16 5 C -0.16 -5.91 10.10 30.59 0.31 -5.60 16 6 C 0.01 0.58 5.71 44.99 0.26 0.84 16 7 H 0.07 2.96 6.34 -2.38 -0.02 2.94 16 8 N -0.68 -36.15 10.87 -314.61 -3.42 -39.57 16 9 C 0.26 13.90 6.81 42.30 0.29 14.19 16 10 C -0.32 -13.80 9.37 23.66 0.22 -13.57 16 11 C 0.14 5.30 11.15 83.09 0.93 6.22 16 12 N -0.60 -26.03 4.88 -188.18 -0.92 -26.95 16 13 H 0.42 16.85 6.40 -92.71 -0.59 16.26 16 14 C 0.32 16.40 6.35 38.88 0.25 16.64 16 15 C -0.49 -24.05 9.03 23.26 0.21 -23.84 16 16 H 0.10 4.63 7.90 -2.91 -0.02 4.61 16 17 C 0.05 2.13 5.18 85.39 0.44 2.57 16 18 N -0.82 -34.52 11.14 21.89 0.24 -34.27 16 19 Si 1.00 32.22 29.59 68.60 2.03 34.25 16 20 H -0.25 -7.70 7.11 99.48 0.71 -6.99 16 21 H -0.26 -8.11 7.11 99.48 0.71 -7.41 16 22 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 23 C -0.40 -22.29 9.83 23.41 0.23 -22.06 16 24 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.78 7.87 -2.39 -0.02 1.76 16 28 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 30 H 0.11 3.29 8.03 -2.38 -0.02 3.27 16 31 H 0.13 5.17 6.26 -2.91 -0.02 5.15 16 32 H 0.19 4.94 8.06 -2.91 -0.02 4.92 16 33 H 0.31 11.26 8.29 -92.71 -0.77 10.49 16 34 H 0.08 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -60.98 289.08 2.41 -58.57 By element: Atomic # 1 Polarization: 42.36 SS G_CDS: 0.50 Total: 42.86 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 3.97 Total: -34.90 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -4.09 Total: -100.78 kcal Atomic # 14 Polarization: 32.22 SS G_CDS: 2.03 Total: 34.25 kcal Total: -60.98 2.41 -58.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380344414.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.551 kcal (2) G-P(sol) polarization free energy of solvation -60.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds