Wall clock time and date at job start Mon Mar 30 2020 02:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46989 * 2 1 4 4 H 1.09002 * 115.55080 * 330.72803 * 3 2 1 5 5 C 1.53002 * 117.49819 * 116.39169 * 3 2 1 6 6 C 1.52995 * 117.49935 * 185.01291 * 3 2 1 7 7 H 1.09002 * 117.50040 * 0.02562 * 6 3 2 8 8 N 1.46513 * 117.49815 * 145.02080 * 6 3 2 9 9 C 1.32200 * 119.99993 * 240.01520 * 8 6 3 10 10 C 1.46919 * 120.83614 * 359.71992 * 9 8 6 11 11 C 1.34375 * 119.36708 * 179.70182 * 10 9 8 12 12 N 1.36422 * 121.22376 * 0.60865 * 11 10 9 13 13 H 0.96996 * 119.09597 * 179.66750 * 12 11 10 14 14 C 1.37770 * 121.81960 * 359.64768 * 12 11 10 15 15 C 1.40176 * 119.74800 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00586 * 203.82539 * 15 14 12 17 17 C 1.40357 * 119.99880 * 23.82208 * 15 14 12 18 18 N 1.30588 * 120.00085 * 16.28663 * 17 15 14 19 19 Si 1.86798 * 119.99928 * 196.29195 * 17 15 14 20 20 H 1.48503 * 109.47347 * 60.00116 * 19 17 15 21 21 H 1.48507 * 109.47078 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47391 * 299.99705 * 19 17 15 23 23 C 1.39067 * 120.51175 * 0.04000 * 14 12 11 24 24 H 1.08994 * 109.47652 * 59.99523 * 1 2 3 25 25 H 1.09005 * 109.46628 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47235 * 299.99418 * 1 2 3 27 27 H 1.09000 * 109.47646 * 240.00440 * 2 1 3 28 28 H 1.09002 * 109.47815 * 120.00163 * 2 1 3 29 29 H 1.08998 * 117.50034 * 214.98407 * 5 3 2 30 30 H 1.09000 * 117.50149 * 0.02562 * 5 3 2 31 31 H 1.07995 * 120.31333 * 359.97438 * 10 9 8 32 32 H 1.08003 * 119.38857 * 180.29649 * 11 10 9 33 33 H 0.96993 * 120.00099 * 180.02562 * 18 17 15 34 34 H 1.08004 * 120.62940 * 179.97438 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3878 2.1717 -0.4808 5 6 2.8442 1.9075 1.2157 6 6 3.5500 1.6580 -0.1186 7 1 4.1802 0.7721 -0.1970 8 7 4.0093 2.8287 -0.8702 9 6 4.7714 2.6708 -1.9389 10 6 5.1737 1.3302 -2.3856 11 6 5.9439 1.2036 -3.4794 12 7 6.3691 2.2972 -4.1753 13 1 6.9281 2.1703 -4.9578 14 6 6.0262 3.5770 -3.7977 15 6 6.4870 4.6697 -4.5451 16 1 6.5670 5.6435 -4.0849 17 6 6.8446 4.4983 -5.8914 18 7 6.4608 3.4307 -6.5381 19 14 7.8696 5.7973 -6.7582 20 1 9.1704 5.9499 -6.0582 21 1 8.1101 5.3817 -8.1635 22 1 7.1438 7.0927 -6.7420 23 6 5.2266 3.7932 -2.6807 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.7215 2.9426 1.5344 30 1 3.0103 1.1856 2.0153 31 1 4.8498 0.4547 -1.8425 32 1 6.2358 0.2180 -3.8108 33 1 6.7082 3.3121 -7.4685 34 1 4.9569 4.7957 -2.3827 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380344420.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:02 Heat of formation + Delta-G solvation = 28.014312 kcal Electronic energy + Delta-G solvation = -15363.650291 eV Core-core repulsion = 12874.722833 eV Total energy + Delta-G solvation = -2488.927458 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.32538 -38.73154 -36.04366 -34.77131 -32.67599 -32.31230 -29.65123 -27.86479 -24.71719 -23.73314 -23.02823 -21.46580 -20.99619 -19.76177 -18.39591 -17.28818 -16.77066 -16.39152 -15.51689 -15.45519 -14.97421 -14.56846 -14.51955 -14.07022 -13.41371 -13.32791 -13.14356 -12.96476 -12.80541 -12.54082 -12.44800 -12.32022 -12.03339 -11.91516 -11.84575 -11.32719 -10.84557 -10.43673 -10.00237 -9.33448 -8.98463 -7.71232 -6.65839 0.94047 1.04098 1.42112 1.53373 1.61773 2.15951 2.50181 2.89110 3.13264 3.52918 3.77387 4.06908 4.12011 4.21240 4.31765 4.48731 4.63644 4.68921 4.79868 4.89079 4.92882 4.96588 5.02994 5.09972 5.14801 5.20859 5.29699 5.31495 5.53270 5.63690 5.82519 5.98209 6.08369 6.45089 6.49830 6.98433 7.18259 7.96385 8.03368 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.048670 B = 0.005004 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.164654 B = 5594.333410 C = 5753.784003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.155 4.155 4 H 0.073 0.927 5 C -0.160 4.160 6 C 0.014 3.986 7 H 0.073 0.927 8 N -0.682 5.682 9 C 0.263 3.737 10 C -0.316 4.316 11 C 0.139 3.861 12 N -0.601 5.601 13 H 0.419 0.581 14 C 0.323 3.677 15 C -0.495 4.495 16 H 0.096 0.904 17 C 0.051 3.949 18 N -0.822 5.822 19 Si 0.996 3.004 20 H -0.256 1.256 21 H -0.260 1.260 22 H -0.265 1.265 23 C -0.403 4.403 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.132 0.868 32 H 0.186 0.814 33 H 0.307 0.693 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.101 -6.940 0.248 6.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.175 4.175 4 H 0.091 0.909 5 C -0.197 4.197 6 C -0.099 4.099 7 H 0.091 0.909 8 N -0.409 5.409 9 C 0.102 3.898 10 C -0.345 4.345 11 C 0.010 3.990 12 N -0.212 5.212 13 H 0.260 0.740 14 C 0.214 3.786 15 C -0.527 4.527 16 H 0.114 0.886 17 C -0.168 4.168 18 N -0.449 5.449 19 Si 0.816 3.184 20 H -0.180 1.180 21 H -0.184 1.184 22 H -0.189 1.189 23 C -0.433 4.433 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.129 0.871 31 H 0.150 0.850 32 H 0.203 0.797 33 H 0.119 0.881 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.377 -6.476 0.650 6.520 hybrid contribution 0.535 0.004 -0.780 0.946 sum 0.157 -6.472 -0.131 6.476 Atomic orbital electron populations 1.21707 0.94434 1.02271 1.01593 1.21091 0.96794 0.92537 1.01855 1.22605 0.94117 0.98173 1.02599 0.90905 1.23054 1.04221 1.01351 0.91107 1.22262 0.93641 0.94527 0.99465 0.90947 1.73093 1.27619 1.26460 1.13716 1.20398 0.88341 0.91523 0.89562 1.22367 1.11362 0.97674 1.03117 1.21947 0.93457 0.92134 0.91511 1.42062 1.46334 1.03660 1.29137 0.74041 1.17710 0.86853 0.83856 0.90217 1.19720 1.40450 0.96579 0.95970 0.88622 1.26931 0.93405 0.99234 0.97192 1.69320 1.33991 1.28450 1.13136 0.85000 0.78551 0.77626 0.77216 1.17985 1.18359 1.18905 1.20154 1.19912 0.96021 1.07170 0.93734 0.90936 0.92372 0.92531 0.90711 0.90780 0.87084 0.85027 0.79687 0.88114 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.87 71.98 0.71 -2.63 16 2 C -0.09 -2.38 6.22 30.59 0.19 -2.19 16 3 C -0.16 -5.72 5.66 -10.79 -0.06 -5.78 16 4 H 0.07 3.00 8.07 -2.39 -0.02 2.98 16 5 C -0.16 -5.80 10.10 30.59 0.31 -5.50 16 6 C 0.01 0.60 5.72 44.99 0.26 0.86 16 7 H 0.07 3.00 6.33 -2.39 -0.02 2.98 16 8 N -0.68 -36.16 10.87 -314.59 -3.42 -39.58 16 9 C 0.26 13.91 6.81 42.30 0.29 14.20 16 10 C -0.32 -13.81 9.37 23.66 0.22 -13.59 16 11 C 0.14 5.30 11.15 83.10 0.93 6.23 16 12 N -0.60 -26.04 4.88 -188.19 -0.92 -26.96 16 13 H 0.42 16.85 6.40 -92.71 -0.59 16.26 16 14 C 0.32 16.41 6.35 38.88 0.25 16.65 16 15 C -0.50 -24.06 9.03 23.26 0.21 -23.85 16 16 H 0.10 4.63 7.90 -2.91 -0.02 4.61 16 17 C 0.05 2.14 5.18 85.39 0.44 2.58 16 18 N -0.82 -34.55 11.15 21.90 0.24 -34.30 16 19 Si 1.00 32.18 29.59 68.60 2.03 34.21 16 20 H -0.26 -8.11 7.11 99.48 0.71 -7.41 16 21 H -0.26 -7.69 7.11 99.48 0.71 -6.98 16 22 H -0.26 -8.76 7.11 99.48 0.71 -8.06 16 23 C -0.40 -22.33 9.83 23.41 0.23 -22.10 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.06 1.29 8.14 -2.38 -0.02 1.28 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 1.83 7.88 -2.39 -0.02 1.81 16 29 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.11 3.29 8.03 -2.39 -0.02 3.27 16 31 H 0.13 5.17 6.25 -2.91 -0.02 5.15 16 32 H 0.19 4.95 8.06 -2.91 -0.02 4.92 16 33 H 0.31 11.32 8.29 -92.71 -0.77 10.55 16 34 H 0.08 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -61.01 289.07 2.41 -58.60 By element: Atomic # 1 Polarization: 42.66 SS G_CDS: 0.50 Total: 43.16 kcal Atomic # 6 Polarization: -39.09 SS G_CDS: 3.97 Total: -35.12 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -4.09 Total: -100.85 kcal Atomic # 14 Polarization: 32.18 SS G_CDS: 2.03 Total: 34.21 kcal Total: -61.01 2.41 -58.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380344420.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.611 kcal (2) G-P(sol) polarization free energy of solvation -61.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds