Wall clock time and date at job start Mon Mar 30 2020 02:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.47100 * 2 1 4 4 H 1.09006 * 115.55076 * 330.67031 * 3 2 1 5 5 C 1.53074 * 117.53150 * 116.38583 * 3 2 1 6 6 C 1.52999 * 59.98434 * 107.46790 * 5 3 2 7 7 H 1.08996 * 117.49771 * 107.50258 * 6 5 3 8 8 N 1.46505 * 117.49733 * 252.49817 * 6 5 3 9 9 C 1.32204 * 119.99877 * 188.74434 * 8 6 5 10 10 C 1.46920 * 120.83613 * 0.02562 * 9 8 6 11 11 C 1.34378 * 119.37193 * 180.02562 * 10 9 8 12 12 N 1.36423 * 121.21694 * 359.97438 * 11 10 9 13 13 H 0.97009 * 119.08734 * 179.97438 * 12 11 10 14 14 C 1.37763 * 121.82548 * 359.97438 * 12 11 10 15 15 C 1.40184 * 119.74718 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99614 * 155.89148 * 15 14 12 17 17 C 1.40353 * 119.99675 * 336.16655 * 15 14 12 18 18 N 1.30586 * 119.99668 * 161.27741 * 17 15 14 19 19 Si 1.86790 * 120.00186 * 341.28424 * 17 15 14 20 20 H 1.48498 * 109.47751 * 94.44607 * 19 17 15 21 21 H 1.48499 * 109.47173 * 214.44987 * 19 17 15 22 22 H 1.48510 * 109.47216 * 334.44443 * 19 17 15 23 23 C 1.39074 * 120.50976 * 0.26957 * 14 12 11 24 24 H 1.08997 * 109.46703 * 300.00086 * 1 2 3 25 25 H 1.09002 * 109.46942 * 60.00018 * 1 2 3 26 26 H 1.08997 * 109.47120 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46703 * 239.99914 * 2 1 3 28 28 H 1.09002 * 109.46616 * 120.00419 * 2 1 3 29 29 H 1.09001 * 117.51234 * 359.97438 * 5 3 2 30 30 H 1.09001 * 117.49117 * 214.95366 * 5 3 2 31 31 H 1.08003 * 120.31089 * 359.97438 * 10 9 8 32 32 H 1.08000 * 119.39246 * 179.97438 * 11 10 9 33 33 H 0.97001 * 119.99760 * 179.97438 * 18 17 15 34 34 H 1.07999 * 120.62530 * 179.72913 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1715 -0.4817 5 6 2.8447 1.9085 1.2160 6 6 3.5502 1.6578 -0.1183 7 1 3.8922 2.5283 -0.6781 8 7 4.3973 0.4670 -0.2223 9 6 5.1640 0.2920 -1.2850 10 6 5.1814 1.2802 -2.3721 11 6 5.9715 1.0725 -3.4390 12 7 6.7579 -0.0385 -3.5309 13 1 7.3161 -0.1575 -4.3153 14 6 6.7811 -0.9960 -2.5407 15 6 7.6054 -2.1212 -2.6805 16 1 7.9370 -2.6598 -1.8050 17 6 8.0044 -2.5445 -3.9578 18 7 9.0350 -3.3352 -4.0913 19 14 7.0613 -1.9766 -5.4669 20 1 7.7172 -0.7722 -6.0364 21 1 7.0511 -3.0610 -6.4813 22 1 5.6656 -1.6451 -5.0827 23 6 5.9886 -0.8579 -1.4063 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.0105 1.1875 2.0165 30 1 2.7220 2.9439 1.5337 31 1 4.5643 2.1647 -2.3145 32 1 5.9842 1.7985 -4.2385 33 1 9.3106 -3.6280 -4.9740 34 1 6.0021 -1.6096 -0.6309 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380344424.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:04 Heat of formation + Delta-G solvation = 54.876567 kcal Electronic energy + Delta-G solvation = -15596.477486 eV Core-core repulsion = 13108.714863 eV Total energy + Delta-G solvation = -2487.762623 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.94979 -37.30688 -34.24120 -33.30715 -31.37511 -31.01895 -28.25748 -26.15413 -23.42816 -22.02124 -21.65336 -20.38077 -18.98637 -18.20208 -17.30307 -15.55206 -15.30067 -15.13532 -14.03903 -13.72529 -13.65899 -13.38180 -13.19027 -12.88400 -12.31033 -11.85373 -11.63421 -11.52796 -11.22594 -11.08463 -10.88332 -10.68878 -10.56624 -10.47493 -10.25682 -9.70973 -9.36364 -8.93253 -8.45386 -7.69533 -7.35755 -6.18819 -4.78412 2.39601 2.44547 2.68068 2.82657 2.95444 3.46621 4.01173 4.21047 4.67181 5.17106 5.19287 5.31680 5.40476 5.56316 5.67928 5.81996 5.92159 6.07868 6.15226 6.26368 6.31063 6.35655 6.45682 6.51802 6.56462 6.64596 6.68186 6.79406 6.97730 7.19579 7.54034 7.71918 7.92634 7.99705 8.07047 8.52564 8.62465 9.58326 9.67648 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.036772 B = 0.006057 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.265315 B = 4621.889380 C = 4691.081491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.165 4.165 4 H 0.086 0.914 5 C -0.173 4.173 6 C 0.039 3.961 7 H 0.067 0.933 8 N -0.625 5.625 9 C 0.279 3.721 10 C -0.274 4.274 11 C 0.113 3.887 12 N -0.633 5.633 13 H 0.390 0.610 14 C 0.297 3.703 15 C -0.449 4.449 16 H 0.114 0.886 17 C 0.080 3.920 18 N -0.780 5.780 19 Si 0.881 3.119 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.241 1.241 23 C -0.346 4.346 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.135 0.865 33 H 0.292 0.708 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.316 6.134 -2.576 9.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.184 4.184 4 H 0.104 0.896 5 C -0.211 4.211 6 C -0.075 4.075 7 H 0.085 0.915 8 N -0.349 5.349 9 C 0.117 3.883 10 C -0.303 4.303 11 C -0.014 4.014 12 N -0.249 5.249 13 H 0.228 0.772 14 C 0.191 3.809 15 C -0.481 4.481 16 H 0.132 0.868 17 C -0.143 4.143 18 N -0.403 5.403 19 Si 0.706 3.294 20 H -0.193 1.193 21 H -0.197 1.197 22 H -0.164 1.164 23 C -0.374 4.374 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.137 0.863 32 H 0.153 0.847 33 H 0.103 0.897 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.460 5.628 -1.781 8.751 hybrid contribution -0.067 0.909 -1.844 2.057 sum -6.527 6.536 -3.625 9.923 Atomic orbital electron populations 1.21794 0.97000 1.00768 1.00924 1.20789 0.93485 0.94575 1.02447 1.22542 0.95231 0.97424 1.03226 0.89597 1.22982 1.05488 1.00191 0.92428 1.22163 0.91553 0.95761 0.97994 0.91502 1.73217 1.17770 1.20033 1.23928 1.20230 0.90147 0.90468 0.87471 1.22444 1.06561 1.03403 0.97934 1.21211 0.92780 0.88927 0.98448 1.42355 1.41369 1.19405 1.21812 0.77196 1.17786 0.90447 0.86973 0.85646 1.19358 1.24472 1.08885 0.95424 0.86784 1.26223 0.93309 0.93945 1.00837 1.69541 1.18523 1.25063 1.27221 0.86811 0.82878 0.79131 0.80568 1.19278 1.19732 1.16354 1.20093 1.11129 1.03163 1.03049 0.93259 0.93435 0.93298 0.92027 0.91884 0.89152 0.90345 0.86254 0.84738 0.89701 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.87 37.16 0.37 -1.65 16 2 C -0.08 -1.30 5.67 -26.73 -0.15 -1.45 16 3 C -0.16 -2.87 5.74 -90.58 -0.52 -3.39 16 4 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 5 C -0.17 -3.01 10.11 -26.69 -0.27 -3.28 16 6 C 0.04 0.77 5.97 -67.93 -0.41 0.37 16 7 H 0.07 1.29 6.33 -51.93 -0.33 0.97 16 8 N -0.62 -14.67 10.24 -50.79 -0.52 -15.19 16 9 C 0.28 6.58 6.81 -82.74 -0.56 6.02 16 10 C -0.27 -5.52 9.37 -37.43 -0.35 -5.87 16 11 C 0.11 2.05 11.15 -16.87 -0.19 1.86 16 12 N -0.63 -12.88 3.82 -10.83 -0.04 -12.92 16 13 H 0.39 7.30 4.37 -40.82 -0.18 7.12 16 14 C 0.30 6.96 5.93 -84.16 -0.50 6.46 16 15 C -0.45 -10.94 9.57 -38.06 -0.36 -11.30 16 16 H 0.11 2.96 8.06 -52.49 -0.42 2.54 16 17 C 0.08 1.81 5.44 -17.29 -0.09 1.72 16 18 N -0.78 -18.27 13.92 55.57 0.77 -17.50 16 19 Si 0.88 16.73 24.66 -169.99 -4.19 12.53 16 20 H -0.27 -4.53 6.81 56.52 0.39 -4.15 16 21 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.24 -4.81 6.97 56.52 0.39 -4.41 16 23 C -0.35 -8.50 9.83 -37.82 -0.37 -8.87 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.15 7.88 -51.93 -0.41 0.74 16 29 H 0.09 1.64 8.04 -51.93 -0.42 1.23 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.12 2.17 6.26 -52.48 -0.33 1.84 16 32 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 34 H 0.12 3.02 8.06 -52.49 -0.42 2.60 16 LS Contribution 283.08 15.07 4.27 4.27 Total: -1.00 -26.47 283.08 -7.75 -34.22 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -4.62 Total: 13.98 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -3.41 Total: -19.39 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.21 Total: -45.61 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -4.19 Total: 12.53 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.47 -7.75 -34.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380344424.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.093 kcal (2) G-P(sol) polarization free energy of solvation -26.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds