Wall clock time and date at job start Mon Mar 30 2020 02:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.47100 * 2 1 4 4 H 1.09006 * 115.55076 * 330.67031 * 3 2 1 5 5 C 1.53074 * 117.53150 * 116.38583 * 3 2 1 6 6 C 1.52999 * 59.98434 * 107.46790 * 5 3 2 7 7 H 1.08996 * 117.49771 * 107.50258 * 6 5 3 8 8 N 1.46505 * 117.49733 * 252.49817 * 6 5 3 9 9 C 1.32204 * 119.99877 * 188.74434 * 8 6 5 10 10 C 1.46920 * 120.83613 * 0.02562 * 9 8 6 11 11 C 1.34378 * 119.37193 * 180.02562 * 10 9 8 12 12 N 1.36423 * 121.21694 * 359.97438 * 11 10 9 13 13 H 0.97009 * 119.08734 * 179.97438 * 12 11 10 14 14 C 1.37763 * 121.82548 * 359.97438 * 12 11 10 15 15 C 1.40184 * 119.74718 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99614 * 155.89148 * 15 14 12 17 17 C 1.40353 * 119.99675 * 336.16655 * 15 14 12 18 18 N 1.30586 * 119.99668 * 161.27741 * 17 15 14 19 19 Si 1.86790 * 120.00186 * 341.28424 * 17 15 14 20 20 H 1.48498 * 109.47751 * 94.44607 * 19 17 15 21 21 H 1.48499 * 109.47173 * 214.44987 * 19 17 15 22 22 H 1.48510 * 109.47216 * 334.44443 * 19 17 15 23 23 C 1.39074 * 120.50976 * 0.26957 * 14 12 11 24 24 H 1.08997 * 109.46703 * 300.00086 * 1 2 3 25 25 H 1.09002 * 109.46942 * 60.00018 * 1 2 3 26 26 H 1.08997 * 109.47120 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46703 * 239.99914 * 2 1 3 28 28 H 1.09002 * 109.46616 * 120.00419 * 2 1 3 29 29 H 1.09001 * 117.51234 * 359.97438 * 5 3 2 30 30 H 1.09001 * 117.49117 * 214.95366 * 5 3 2 31 31 H 1.08003 * 120.31089 * 359.97438 * 10 9 8 32 32 H 1.08000 * 119.39246 * 179.97438 * 11 10 9 33 33 H 0.97001 * 119.99760 * 179.97438 * 18 17 15 34 34 H 1.07999 * 120.62530 * 179.72913 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1715 -0.4817 5 6 2.8447 1.9085 1.2160 6 6 3.5502 1.6578 -0.1183 7 1 3.8922 2.5283 -0.6781 8 7 4.3973 0.4670 -0.2223 9 6 5.1640 0.2920 -1.2850 10 6 5.1814 1.2802 -2.3721 11 6 5.9715 1.0725 -3.4390 12 7 6.7579 -0.0385 -3.5309 13 1 7.3161 -0.1575 -4.3153 14 6 6.7811 -0.9960 -2.5407 15 6 7.6054 -2.1212 -2.6805 16 1 7.9370 -2.6598 -1.8050 17 6 8.0044 -2.5445 -3.9578 18 7 9.0350 -3.3352 -4.0913 19 14 7.0613 -1.9766 -5.4669 20 1 7.7172 -0.7722 -6.0364 21 1 7.0511 -3.0610 -6.4813 22 1 5.6656 -1.6451 -5.0827 23 6 5.9886 -0.8579 -1.4063 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.0105 1.1875 2.0165 30 1 2.7220 2.9439 1.5337 31 1 4.5643 2.1647 -2.3145 32 1 5.9842 1.7985 -4.2385 33 1 9.3106 -3.6280 -4.9740 34 1 6.0021 -1.6096 -0.6309 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380344424.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:04 Heat of formation + Delta-G solvation = 38.780299 kcal Electronic energy + Delta-G solvation = -15597.175473 eV Core-core repulsion = 13108.714863 eV Total energy + Delta-G solvation = -2488.460610 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.60505 -38.77892 -35.96048 -34.97547 -32.77496 -32.66024 -29.91294 -27.93265 -24.69582 -23.67270 -23.25157 -21.85647 -20.57293 -19.86664 -18.98636 -17.13959 -16.91205 -16.69159 -15.50279 -15.26318 -15.10713 -14.97952 -14.79598 -14.29736 -13.78267 -13.29407 -13.10598 -13.01797 -12.84668 -12.70534 -12.36483 -12.25937 -12.09078 -11.84383 -11.81824 -11.34142 -10.83490 -10.46770 -10.14242 -9.35862 -9.10624 -7.87482 -6.67991 0.77764 0.90924 1.11116 1.33261 1.40619 1.91010 2.40599 2.55821 3.08522 3.50695 3.76646 3.96090 4.02821 4.28036 4.43822 4.46771 4.51637 4.66864 4.70368 4.81602 4.84153 4.93149 4.93451 5.05553 5.17125 5.20963 5.28160 5.32105 5.54770 5.61155 5.80283 5.87087 6.08055 6.17828 6.34411 6.77618 6.86892 7.89607 7.98185 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.036772 B = 0.006057 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.265315 B = 4621.889380 C = 4691.081491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.150 4.150 4 H 0.114 0.886 5 C -0.161 4.161 6 C 0.005 3.995 7 H 0.078 0.922 8 N -0.655 5.655 9 C 0.261 3.739 10 C -0.294 4.294 11 C 0.130 3.870 12 N -0.631 5.631 13 H 0.400 0.600 14 C 0.304 3.696 15 C -0.482 4.482 16 H 0.073 0.927 17 C 0.047 3.953 18 N -0.812 5.812 19 Si 0.940 3.060 20 H -0.219 1.219 21 H -0.262 1.262 22 H -0.255 1.255 23 C -0.384 4.384 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.032 0.968 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.142 0.858 32 H 0.199 0.801 33 H 0.305 0.695 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 8.834 -5.091 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 C -0.169 4.169 4 H 0.132 0.868 5 C -0.199 4.199 6 C -0.108 4.108 7 H 0.095 0.905 8 N -0.380 5.380 9 C 0.097 3.903 10 C -0.322 4.322 11 C 0.005 3.995 12 N -0.248 5.248 13 H 0.241 0.759 14 C 0.197 3.803 15 C -0.514 4.514 16 H 0.091 0.909 17 C -0.174 4.174 18 N -0.436 5.436 19 Si 0.760 3.240 20 H -0.143 1.143 21 H -0.187 1.187 22 H -0.178 1.178 23 C -0.413 4.413 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.128 0.872 31 H 0.160 0.840 32 H 0.216 0.784 33 H 0.117 0.883 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.970 8.338 -4.283 12.303 hybrid contribution 0.431 0.001 -0.924 1.019 sum -7.539 8.339 -5.206 12.389 Atomic orbital electron populations 1.21716 0.93738 1.01822 1.02280 1.20759 0.96311 0.94298 0.99978 1.22651 0.93683 0.97836 1.02759 0.86778 1.23040 1.04029 1.01563 0.91258 1.22340 0.92864 0.95056 1.00538 0.90464 1.73081 1.18086 1.22173 1.24632 1.20367 0.89977 0.91009 0.88967 1.22508 1.08482 1.03561 0.97669 1.22021 0.90059 0.88310 0.99133 1.42302 1.41889 1.19356 1.21241 0.75948 1.17482 0.89398 0.87249 0.86133 1.19275 1.26327 1.10290 0.95487 0.90890 1.27014 0.93652 0.93625 1.03085 1.69560 1.19454 1.25562 1.28995 0.85906 0.80614 0.80891 0.76593 1.14285 1.18739 1.17828 1.20016 1.13657 1.04033 1.03624 0.91770 0.92078 0.92549 0.94970 0.94025 0.90707 0.87211 0.84025 0.78412 0.88318 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.87 71.99 0.71 -2.77 16 2 C -0.08 -2.59 5.67 30.60 0.17 -2.41 16 3 C -0.15 -4.95 5.74 -10.77 -0.06 -5.01 16 4 H 0.11 3.14 8.08 -2.38 -0.02 3.12 16 5 C -0.16 -5.37 10.11 30.62 0.31 -5.06 16 6 C 0.00 0.19 5.97 44.99 0.27 0.46 16 7 H 0.08 2.84 6.33 -2.39 -0.02 2.82 16 8 N -0.66 -31.76 10.24 -314.60 -3.22 -34.98 16 9 C 0.26 12.62 6.81 42.30 0.29 12.91 16 10 C -0.29 -11.29 9.37 23.66 0.22 -11.07 16 11 C 0.13 4.27 11.15 83.10 0.93 5.19 16 12 N -0.63 -24.37 3.82 -188.18 -0.72 -25.09 16 13 H 0.40 13.58 4.37 -92.70 -0.40 13.18 16 14 C 0.30 14.70 5.93 38.88 0.23 14.93 16 15 C -0.48 -24.81 9.57 23.26 0.22 -24.59 16 16 H 0.07 4.20 8.06 -2.91 -0.02 4.18 16 17 C 0.05 2.14 5.44 85.39 0.46 2.61 16 18 N -0.81 -38.52 13.92 21.89 0.30 -38.22 16 19 Si 0.94 32.52 24.66 68.60 1.69 34.21 16 20 H -0.22 -6.01 6.81 99.48 0.68 -5.33 16 21 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 22 H -0.25 -9.42 6.97 99.48 0.69 -8.73 16 23 C -0.38 -20.19 9.83 23.41 0.23 -19.96 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.04 1.56 7.88 -2.39 -0.02 1.54 16 29 H 0.07 2.71 8.04 -2.39 -0.02 2.70 16 30 H 0.11 2.95 8.14 -2.39 -0.02 2.94 16 31 H 0.14 4.73 6.26 -2.91 -0.02 4.71 16 32 H 0.20 3.98 8.06 -2.91 -0.02 3.95 16 33 H 0.31 12.58 8.29 -92.71 -0.77 11.82 16 34 H 0.08 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -62.50 283.08 2.69 -59.81 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: 0.65 Total: 39.02 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 3.98 Total: -34.76 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -3.64 Total: -98.28 kcal Atomic # 14 Polarization: 32.52 SS G_CDS: 1.69 Total: 34.21 kcal Total: -62.50 2.69 -59.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380344424.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.592 kcal (2) G-P(sol) polarization free energy of solvation -62.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds