Wall clock time and date at job start Mon Mar 30 2020 02:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 H 1.08998 * 115.54835 * 29.32950 * 3 2 1 5 5 C 1.53000 * 117.49533 * 243.62428 * 3 2 1 6 6 C 1.52994 * 117.49947 * 175.00291 * 3 2 1 7 7 H 1.09000 * 117.49961 * 215.00458 * 6 3 2 8 8 N 1.46498 * 117.49984 * 359.97438 * 6 3 2 9 9 C 1.32208 * 120.00311 * 240.00473 * 8 6 3 10 10 C 1.46914 * 120.83187 * 359.97380 * 9 8 6 11 11 C 1.34378 * 119.37033 * 180.02562 * 10 9 8 12 12 N 1.36434 * 121.21794 * 359.72153 * 11 10 9 13 13 H 0.97002 * 119.08681 * 180.27970 * 12 11 10 14 14 C 1.37767 * 121.81930 * 0.57365 * 12 11 10 15 15 C 1.40179 * 119.74457 * 179.70797 * 14 12 11 16 16 H 1.07999 * 119.99860 * 203.01675 * 15 14 12 17 17 C 1.40349 * 119.99803 * 23.01632 * 15 14 12 18 18 N 1.30592 * 119.99943 * 199.56879 * 17 15 14 19 19 Si 1.86800 * 120.00113 * 19.56335 * 17 15 14 20 20 H 1.48495 * 109.47324 * 264.70507 * 19 17 15 21 21 H 1.48508 * 109.47094 * 144.70783 * 19 17 15 22 22 H 1.48498 * 109.47136 * 24.71000 * 19 17 15 23 23 C 1.39068 * 120.51115 * 359.42836 * 14 12 11 24 24 H 1.08998 * 109.47538 * 59.99885 * 1 2 3 25 25 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47108 * 299.99933 * 1 2 3 27 27 H 1.08997 * 109.46734 * 239.99777 * 2 1 3 28 28 H 1.08997 * 109.47262 * 119.99642 * 2 1 3 29 29 H 1.09007 * 117.49593 * 145.02426 * 5 3 2 30 30 H 1.09000 * 117.50459 * 359.97438 * 5 3 2 31 31 H 1.07997 * 120.31713 * 359.97438 * 10 9 8 32 32 H 1.07998 * 119.39585 * 179.97438 * 11 10 9 33 33 H 0.96999 * 119.99994 * 5.49471 * 18 17 15 34 34 H 1.08004 * 120.62416 * 180.29748 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9075 -1.2159 6 6 3.5501 1.6579 0.1182 7 1 3.8920 2.5286 0.6778 8 7 4.3970 0.4672 0.2233 9 6 5.1624 0.2921 1.2870 10 6 5.1782 1.2802 2.3741 11 6 5.9677 1.0730 3.4416 12 7 6.7503 -0.0406 3.5369 13 1 7.3053 -0.1610 4.3232 14 6 6.7784 -0.9957 2.5444 15 6 7.6034 -2.1203 2.6847 16 1 7.9245 -2.6668 1.8103 17 6 8.0119 -2.5360 3.9614 18 7 9.0533 -3.3129 4.0929 19 14 7.0662 -1.9779 5.4726 20 1 7.7200 -0.7760 6.0498 21 1 7.0561 -3.0681 6.4808 22 1 5.6707 -1.6460 5.0885 23 6 5.9903 -0.8556 1.4072 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8901 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.7212 2.9428 -1.5344 30 1 3.0098 1.1857 -2.0156 31 1 4.5619 2.1651 2.3155 32 1 5.9800 1.7993 4.2408 33 1 9.5915 -3.5380 3.3179 34 1 6.0073 -1.6056 0.6302 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380344432.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:06 Heat of formation + Delta-G solvation = 49.630710 kcal Electronic energy + Delta-G solvation = -15603.832773 eV Core-core repulsion = 13115.842672 eV Total energy + Delta-G solvation = -2487.990100 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.96117 -37.32187 -34.32026 -33.32333 -31.38344 -30.87536 -28.26517 -25.83462 -23.43019 -21.90076 -21.66758 -20.37394 -19.15705 -18.35155 -17.59377 -15.54798 -15.39748 -14.55024 -14.30015 -13.87564 -13.67933 -13.37953 -12.88879 -12.68512 -12.51146 -11.90492 -11.71586 -11.45407 -11.14318 -10.91380 -10.82489 -10.69060 -10.53887 -10.29272 -10.13601 -9.63661 -9.38399 -8.93881 -8.46027 -7.73899 -7.65992 -6.20856 -4.83304 2.44166 2.51043 2.76532 2.99573 3.12087 3.57460 4.00998 4.21795 4.66000 5.16211 5.17804 5.31747 5.39734 5.55614 5.67398 5.81145 5.91502 6.07141 6.14685 6.26851 6.30882 6.38196 6.45185 6.53336 6.55594 6.65659 6.69742 6.96628 7.13325 7.21614 7.44064 7.51253 7.79070 8.03023 8.16687 8.42749 8.64139 9.57933 9.61285 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.036550 B = 0.006060 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.881393 B = 4619.427640 C = 4679.142855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.165 4.165 4 H 0.086 0.914 5 C -0.173 4.173 6 C 0.039 3.961 7 H 0.068 0.932 8 N -0.627 5.627 9 C 0.280 3.720 10 C -0.274 4.274 11 C 0.114 3.886 12 N -0.634 5.634 13 H 0.390 0.610 14 C 0.301 3.699 15 C -0.517 4.517 16 H 0.101 0.899 17 C 0.036 3.964 18 N -0.792 5.792 19 Si 1.041 2.959 20 H -0.273 1.273 21 H -0.270 1.270 22 H -0.257 1.257 23 C -0.352 4.352 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.137 0.863 33 H 0.295 0.705 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.342 6.385 1.932 9.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.184 4.184 4 H 0.104 0.896 5 C -0.211 4.211 6 C -0.075 4.075 7 H 0.085 0.915 8 N -0.351 5.351 9 C 0.118 3.882 10 C -0.304 4.304 11 C -0.013 4.013 12 N -0.250 5.250 13 H 0.228 0.772 14 C 0.195 3.805 15 C -0.550 4.550 16 H 0.119 0.881 17 C -0.187 4.187 18 N -0.413 5.413 19 Si 0.866 3.134 20 H -0.200 1.200 21 H -0.195 1.195 22 H -0.182 1.182 23 C -0.381 4.381 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.154 0.846 33 H 0.107 0.893 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.688 5.804 2.625 9.237 hybrid contribution 0.426 0.856 -0.701 1.185 sum -6.262 6.660 1.924 9.342 Atomic orbital electron populations 1.21792 0.96972 1.00773 1.00938 1.20787 0.93508 0.94581 1.02423 1.22529 0.95243 0.97429 1.03194 0.89563 1.22971 1.05519 1.00193 0.92427 1.22158 0.91562 0.95760 0.97991 0.91492 1.73212 1.17885 1.20070 1.23955 1.20226 0.90067 0.90459 0.87479 1.22444 1.06555 1.03412 0.97971 1.21226 0.92720 0.88842 0.98473 1.42310 1.41782 1.19372 1.21529 0.77166 1.17760 0.90260 0.86994 0.85467 1.20493 1.27467 1.10352 0.96645 0.88146 1.27257 0.95339 0.93711 1.02399 1.70374 1.09714 1.24703 1.36526 0.84050 0.77522 0.77264 0.74561 1.20044 1.19543 1.18167 1.20072 1.11634 1.03387 1.03011 0.93265 0.93299 0.93402 0.91937 0.92024 0.90333 0.89193 0.86220 0.84551 0.89272 0.86679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.87 37.16 0.37 -1.65 16 2 C -0.08 -1.31 5.67 -26.73 -0.15 -1.46 16 3 C -0.16 -2.87 5.74 -90.62 -0.52 -3.39 16 4 H 0.09 1.35 8.07 -51.93 -0.42 0.94 16 5 C -0.17 -3.03 10.10 -26.73 -0.27 -3.30 16 6 C 0.04 0.78 5.97 -67.94 -0.41 0.37 16 7 H 0.07 1.30 6.33 -51.93 -0.33 0.97 16 8 N -0.63 -14.82 10.24 -50.80 -0.52 -15.34 16 9 C 0.28 6.65 6.81 -82.74 -0.56 6.09 16 10 C -0.27 -5.54 9.37 -37.43 -0.35 -5.89 16 11 C 0.11 2.06 11.15 -16.87 -0.19 1.87 16 12 N -0.63 -12.87 3.83 -10.83 -0.04 -12.91 16 13 H 0.39 7.23 4.34 -40.82 -0.18 7.06 16 14 C 0.30 7.11 5.94 -84.16 -0.50 6.61 16 15 C -0.52 -12.58 9.42 -38.06 -0.36 -12.94 16 16 H 0.10 2.57 8.06 -52.49 -0.42 2.15 16 17 C 0.04 0.83 5.43 -17.29 -0.09 0.74 16 18 N -0.79 -18.83 13.64 55.57 0.76 -18.07 16 19 Si 1.04 19.75 25.04 -169.99 -4.26 15.49 16 20 H -0.27 -4.52 6.83 56.52 0.39 -4.14 16 21 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.26 -4.97 6.96 56.52 0.39 -4.58 16 23 C -0.35 -8.78 9.83 -37.82 -0.37 -9.16 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.06 1.15 7.87 -51.93 -0.41 0.74 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.19 8.14 -51.92 -0.42 0.76 16 30 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 31 H 0.12 2.18 6.26 -52.49 -0.33 1.85 16 32 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.30 6.87 8.73 -40.82 -0.36 6.51 16 34 H 0.12 2.99 8.06 -52.48 -0.42 2.56 16 LS Contribution 283.46 15.07 4.27 4.27 Total: -1.00 -26.72 283.46 -7.83 -34.55 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -4.64 Total: 14.11 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -3.41 Total: -22.10 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.20 Total: -46.32 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.26 Total: 15.49 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.72 -7.83 -34.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380344432.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.182 kcal (2) G-P(sol) polarization free energy of solvation -26.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds