Wall clock time and date at job start Mon Mar 30 2020 02:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 H 1.08998 * 115.54835 * 29.32950 * 3 2 1 5 5 C 1.53000 * 117.49533 * 243.62428 * 3 2 1 6 6 C 1.52994 * 117.49947 * 175.00291 * 3 2 1 7 7 H 1.09000 * 117.49961 * 215.00458 * 6 3 2 8 8 N 1.46498 * 117.49984 * 359.97438 * 6 3 2 9 9 C 1.32208 * 120.00311 * 240.00473 * 8 6 3 10 10 C 1.46914 * 120.83187 * 359.97380 * 9 8 6 11 11 C 1.34378 * 119.37033 * 180.02562 * 10 9 8 12 12 N 1.36434 * 121.21794 * 359.72153 * 11 10 9 13 13 H 0.97002 * 119.08681 * 180.27970 * 12 11 10 14 14 C 1.37767 * 121.81930 * 0.57365 * 12 11 10 15 15 C 1.40179 * 119.74457 * 179.70797 * 14 12 11 16 16 H 1.07999 * 119.99860 * 203.01675 * 15 14 12 17 17 C 1.40349 * 119.99803 * 23.01632 * 15 14 12 18 18 N 1.30592 * 119.99943 * 199.56879 * 17 15 14 19 19 Si 1.86800 * 120.00113 * 19.56335 * 17 15 14 20 20 H 1.48495 * 109.47324 * 264.70507 * 19 17 15 21 21 H 1.48508 * 109.47094 * 144.70783 * 19 17 15 22 22 H 1.48498 * 109.47136 * 24.71000 * 19 17 15 23 23 C 1.39068 * 120.51115 * 359.42836 * 14 12 11 24 24 H 1.08998 * 109.47538 * 59.99885 * 1 2 3 25 25 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47108 * 299.99933 * 1 2 3 27 27 H 1.08997 * 109.46734 * 239.99777 * 2 1 3 28 28 H 1.08997 * 109.47262 * 119.99642 * 2 1 3 29 29 H 1.09007 * 117.49593 * 145.02426 * 5 3 2 30 30 H 1.09000 * 117.50459 * 359.97438 * 5 3 2 31 31 H 1.07997 * 120.31713 * 359.97438 * 10 9 8 32 32 H 1.07998 * 119.39585 * 179.97438 * 11 10 9 33 33 H 0.96999 * 119.99994 * 5.49471 * 18 17 15 34 34 H 1.08004 * 120.62416 * 180.29748 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9075 -1.2159 6 6 3.5501 1.6579 0.1182 7 1 3.8920 2.5286 0.6778 8 7 4.3970 0.4672 0.2233 9 6 5.1624 0.2921 1.2870 10 6 5.1782 1.2802 2.3741 11 6 5.9677 1.0730 3.4416 12 7 6.7503 -0.0406 3.5369 13 1 7.3053 -0.1610 4.3232 14 6 6.7784 -0.9957 2.5444 15 6 7.6034 -2.1203 2.6847 16 1 7.9245 -2.6668 1.8103 17 6 8.0119 -2.5360 3.9614 18 7 9.0533 -3.3129 4.0929 19 14 7.0662 -1.9779 5.4726 20 1 7.7200 -0.7760 6.0498 21 1 7.0561 -3.0681 6.4808 22 1 5.6707 -1.6460 5.0885 23 6 5.9903 -0.8556 1.4072 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8901 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.7212 2.9428 -1.5344 30 1 3.0098 1.1857 -2.0156 31 1 4.5619 2.1651 2.3155 32 1 5.9800 1.7993 4.2408 33 1 9.5915 -3.5380 3.3179 34 1 6.0073 -1.6056 0.6302 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380344432.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:05 Heat of formation + Delta-G solvation = 33.358249 kcal Electronic energy + Delta-G solvation = -15604.538400 eV Core-core repulsion = 13115.842672 eV Total energy + Delta-G solvation = -2488.695727 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.62830 -38.80183 -36.06242 -34.99925 -32.74790 -32.56427 -29.93273 -27.62715 -24.70099 -23.56027 -23.27269 -21.86396 -20.81009 -20.01681 -19.23052 -17.09216 -17.02474 -16.16415 -15.85068 -15.27025 -15.17350 -14.95624 -14.37574 -14.28088 -14.15127 -13.32203 -13.08631 -12.90046 -12.71265 -12.60890 -12.32688 -12.15095 -11.96194 -11.85108 -11.71330 -11.27787 -10.85922 -10.48318 -10.17014 -9.56888 -9.36895 -7.90658 -6.76072 0.82438 0.90931 1.22786 1.45444 1.65657 2.02581 2.40003 2.55426 3.05885 3.48141 3.75333 3.94734 4.03704 4.26786 4.42685 4.46424 4.50722 4.69001 4.72633 4.79096 4.87129 4.91680 4.92692 5.11913 5.19448 5.25591 5.28188 5.30958 5.51227 5.57287 5.62678 5.81367 5.86915 6.24929 6.35784 6.72371 6.86188 7.75268 7.87691 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.036550 B = 0.006060 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.881393 B = 4619.427640 C = 4679.142855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.150 4.150 4 H 0.115 0.885 5 C -0.161 4.161 6 C 0.005 3.995 7 H 0.079 0.921 8 N -0.657 5.657 9 C 0.261 3.739 10 C -0.295 4.295 11 C 0.133 3.867 12 N -0.630 5.630 13 H 0.402 0.598 14 C 0.307 3.693 15 C -0.545 4.545 16 H 0.065 0.935 17 C 0.011 3.989 18 N -0.806 5.806 19 Si 1.071 2.929 20 H -0.219 1.219 21 H -0.266 1.266 22 H -0.262 1.262 23 C -0.390 4.390 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.031 0.969 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.203 0.797 33 H 0.287 0.713 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.966 9.284 4.177 12.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 C -0.169 4.169 4 H 0.133 0.867 5 C -0.199 4.199 6 C -0.108 4.108 7 H 0.096 0.904 8 N -0.381 5.381 9 C 0.097 3.903 10 C -0.323 4.323 11 C 0.007 3.993 12 N -0.248 5.248 13 H 0.242 0.758 14 C 0.200 3.800 15 C -0.577 4.577 16 H 0.083 0.917 17 C -0.208 4.208 18 N -0.427 5.427 19 Si 0.888 3.112 20 H -0.143 1.143 21 H -0.192 1.192 22 H -0.187 1.187 23 C -0.419 4.419 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.128 0.872 30 H 0.092 0.908 31 H 0.161 0.839 32 H 0.220 0.780 33 H 0.099 0.901 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.288 8.714 4.847 12.966 hybrid contribution 0.909 -0.091 -1.558 1.806 sum -7.379 8.624 3.288 11.817 Atomic orbital electron populations 1.21714 0.93679 1.01832 1.02319 1.20758 0.96365 0.94314 0.99922 1.22639 0.93667 0.97841 1.02705 0.86678 1.23031 1.04052 1.01581 0.91247 1.22339 0.92883 0.95042 1.00567 0.90382 1.73073 1.18141 1.22240 1.24664 1.20365 0.89879 0.91006 0.89039 1.22508 1.08573 1.03571 0.97697 1.22072 0.89854 0.88196 0.99153 1.42278 1.42270 1.19289 1.20920 0.75780 1.17495 0.89203 0.87341 0.85999 1.20444 1.29060 1.11595 0.96608 0.91697 1.28565 0.95126 0.92676 1.04392 1.70448 1.10491 1.25587 1.36209 0.83750 0.76403 0.79386 0.71623 1.14316 1.19172 1.18659 1.20007 1.14137 1.04242 1.03533 0.91767 0.92559 0.92004 0.94125 0.94982 0.87158 0.90787 0.83927 0.78008 0.90139 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.87 71.98 0.71 -2.76 16 2 C -0.08 -2.59 5.67 30.59 0.17 -2.42 16 3 C -0.15 -4.91 5.74 -10.79 -0.06 -4.97 16 4 H 0.12 3.15 8.07 -2.39 -0.02 3.13 16 5 C -0.16 -5.37 10.10 30.59 0.31 -5.06 16 6 C 0.00 0.18 5.97 44.99 0.27 0.44 16 7 H 0.08 2.86 6.33 -2.39 -0.02 2.84 16 8 N -0.66 -31.91 10.24 -314.62 -3.22 -35.14 16 9 C 0.26 12.67 6.81 42.30 0.29 12.96 16 10 C -0.29 -11.27 9.37 23.66 0.22 -11.05 16 11 C 0.13 4.28 11.15 83.09 0.93 5.20 16 12 N -0.63 -24.15 3.83 -188.18 -0.72 -24.87 16 13 H 0.40 13.41 4.34 -92.71 -0.40 13.01 16 14 C 0.31 14.84 5.94 38.88 0.23 15.07 16 15 C -0.54 -27.84 9.42 23.26 0.22 -27.62 16 16 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 17 C 0.01 0.52 5.43 85.39 0.46 0.99 16 18 N -0.81 -38.99 13.64 21.89 0.30 -38.69 16 19 Si 1.07 37.37 25.04 68.60 1.72 39.09 16 20 H -0.22 -5.85 6.83 99.48 0.68 -5.18 16 21 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 22 H -0.26 -9.37 6.96 99.48 0.69 -8.67 16 23 C -0.39 -20.63 9.83 23.41 0.23 -20.40 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.04 1.53 7.87 -2.39 -0.02 1.51 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.11 2.96 8.14 -2.38 -0.02 2.94 16 30 H 0.07 2.69 8.03 -2.39 -0.02 2.67 16 31 H 0.14 4.72 6.26 -2.91 -0.02 4.70 16 32 H 0.20 3.88 8.06 -2.91 -0.02 3.85 16 33 H 0.29 13.97 8.73 -92.71 -0.81 13.16 16 34 H 0.08 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -62.91 283.46 2.66 -60.25 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: 0.61 Total: 38.98 kcal Atomic # 6 Polarization: -43.60 SS G_CDS: 3.98 Total: -39.62 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -3.64 Total: -98.70 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 1.72 Total: 39.09 kcal Total: -62.91 2.66 -60.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380344432.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.606 kcal (2) G-P(sol) polarization free energy of solvation -62.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds