Wall clock time and date at job start Mon Mar 30 2020 03:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 115.55991 * 2 1 4 4 C 1.53000 * 117.49337 * 214.31785 * 2 1 3 5 5 C 1.52996 * 117.49869 * 145.69848 * 2 1 3 6 6 H 1.08998 * 117.49779 * 214.97893 * 5 2 1 7 7 C 1.53009 * 117.50020 * 359.97438 * 5 2 1 8 8 N 1.46499 * 109.47237 * 185.00387 * 7 5 2 9 9 C 1.32208 * 120.00115 * 116.16468 * 8 7 5 10 10 C 1.46921 * 120.83298 * 353.59589 * 9 8 7 11 11 C 1.34381 * 119.36466 * 179.70303 * 10 9 8 12 12 N 1.36424 * 121.22024 * 0.60277 * 11 10 9 13 13 H 0.97002 * 119.08313 * 179.66980 * 12 11 10 14 14 C 1.37766 * 121.82204 * 359.64924 * 12 11 10 15 15 C 1.40178 * 119.74288 * 180.02562 * 14 12 11 16 16 H 1.07996 * 120.00314 * 156.89929 * 15 14 12 17 17 C 1.40354 * 119.99883 * 336.89853 * 15 14 12 18 18 N 1.30586 * 120.00208 * 338.18049 * 17 15 14 19 19 Si 1.86810 * 119.99701 * 158.18078 * 17 15 14 20 20 H 1.48497 * 109.46870 * 89.99935 * 19 17 15 21 21 H 1.48501 * 109.46990 * 210.00168 * 19 17 15 22 22 H 1.48501 * 109.47056 * 330.00087 * 19 17 15 23 23 C 1.39066 * 120.51387 * 0.04572 * 14 12 11 24 24 H 1.09000 * 109.46816 * 154.29257 * 1 2 3 25 25 H 1.09002 * 109.46374 * 274.29265 * 1 2 3 26 26 H 1.09001 * 109.46691 * 34.28889 * 1 2 3 27 27 H 1.09001 * 117.50530 * 359.97438 * 4 2 1 28 28 H 1.09003 * 117.49975 * 144.99635 * 4 2 1 29 29 H 1.09004 * 109.46519 * 305.00262 * 7 5 2 30 30 H 1.08994 * 109.46842 * 65.00224 * 7 5 2 31 31 H 1.07997 * 120.31392 * 359.97438 * 10 9 8 32 32 H 1.08000 * 119.38605 * 180.24772 * 11 10 9 33 33 H 0.96996 * 119.99857 * 179.97438 * 18 17 15 34 34 H 1.08000 * 120.62957 * 179.97438 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7652 5 6 2.2365 -1.1211 0.7648 6 1 3.1716 -0.8753 1.2681 7 6 1.3589 -2.1561 1.4716 8 7 2.2059 -3.0707 2.2413 9 6 2.1047 -3.1146 3.5587 10 6 1.2529 -2.1598 4.2808 11 6 1.1671 -2.2350 5.6198 12 7 1.8656 -3.1735 6.3215 13 1 1.7844 -3.1968 7.2879 14 6 2.6826 -4.0893 5.6957 15 6 3.3801 -5.0353 6.4597 16 1 3.7092 -5.9588 6.0066 17 6 3.6508 -4.7823 7.8134 18 7 3.6540 -3.5554 8.2605 19 14 4.0064 -6.2009 8.9757 20 1 5.4660 -6.4739 8.9914 21 1 3.5547 -5.8443 10.3447 22 1 3.2812 -7.4121 8.5149 23 6 2.8212 -4.0823 4.3120 24 1 -0.3633 -0.9260 -0.4458 25 1 -0.3632 0.0769 1.0248 26 1 -0.3633 0.8491 -0.5790 27 1 1.6112 -1.8586 -1.2682 28 1 3.1713 -0.8750 -1.2688 29 1 0.6679 -1.6479 2.1443 30 1 0.7944 -2.7211 0.7299 31 1 0.6977 -1.4075 3.7403 32 1 0.5380 -1.5358 6.1506 33 1 3.8408 -3.3806 9.1961 34 1 3.4615 -4.7991 3.8195 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380345099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:47 Heat of formation + Delta-G solvation = 50.473414 kcal Electronic energy + Delta-G solvation = -15409.781399 eV Core-core repulsion = 12921.827841 eV Total energy + Delta-G solvation = -2487.953558 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.57835 -37.67490 -34.57081 -33.35632 -30.62846 -29.31639 -28.07093 -26.58262 -24.71478 -21.53291 -21.24069 -20.33511 -18.79256 -17.97159 -16.62680 -15.80491 -15.26179 -14.60445 -14.38850 -13.79189 -13.56662 -12.98224 -12.81778 -12.68535 -12.31677 -11.93662 -11.64798 -11.50137 -11.16312 -11.10754 -10.98116 -10.90698 -10.65269 -10.24511 -9.63758 -9.59616 -9.36811 -9.22290 -8.23072 -7.43335 -7.28219 -5.94886 -4.73944 2.60822 2.76172 2.88306 2.93232 3.17905 3.65456 4.18295 4.27987 4.60697 5.08132 5.19006 5.32735 5.43638 5.53683 5.60024 5.95291 6.02435 6.04749 6.16974 6.18501 6.27567 6.39783 6.55288 6.65173 6.70046 6.72237 6.79971 6.87820 6.98309 7.42720 7.70273 7.78553 8.00356 8.28351 8.29834 8.81397 8.93393 9.69953 9.79901 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.059200 B = 0.004928 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.857682 B = 5680.917005 C = 5927.544926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.170 4.170 3 H 0.094 0.906 4 C -0.177 4.177 5 C -0.124 4.124 6 H 0.096 0.904 7 C 0.093 3.907 8 N -0.670 5.670 9 C 0.282 3.718 10 C -0.300 4.300 11 C 0.125 3.875 12 N -0.604 5.604 13 H 0.410 0.590 14 C 0.331 3.669 15 C -0.470 4.470 16 H 0.103 0.897 17 C 0.079 3.921 18 N -0.805 5.805 19 Si 0.918 3.082 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.256 1.256 23 C -0.360 4.360 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.030 0.970 30 H 0.044 0.956 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.291 0.709 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 3.736 -1.142 6.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.189 4.189 3 H 0.112 0.888 4 C -0.214 4.214 5 C -0.143 4.143 6 H 0.114 0.886 7 C -0.038 4.038 8 N -0.396 5.396 9 C 0.119 3.881 10 C -0.331 4.331 11 C -0.004 4.004 12 N -0.214 5.214 13 H 0.248 0.752 14 C 0.223 3.777 15 C -0.503 4.503 16 H 0.121 0.879 17 C -0.141 4.141 18 N -0.432 5.432 19 Si 0.741 3.259 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.179 1.179 23 C -0.389 4.389 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.148 0.852 33 H 0.103 0.897 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.135 3.552 -1.804 5.742 hybrid contribution -0.317 0.340 1.334 1.413 sum -4.452 3.893 -0.470 5.932 Atomic orbital electron populations 1.21272 0.93391 1.01230 1.01483 1.22366 0.95139 0.94288 1.07097 0.88756 1.23041 1.01715 1.01097 0.95580 1.22641 1.00879 0.97946 0.92860 0.88598 1.21305 0.93797 0.92335 0.96372 1.73379 1.30925 1.30436 1.04831 1.20282 0.87916 0.89366 0.90510 1.22316 1.10537 1.06704 0.93496 1.21217 0.94203 0.91607 0.93420 1.41914 1.39555 1.29068 1.10866 0.75179 1.17579 0.85019 0.83997 0.91116 1.19465 1.32410 1.04710 0.93704 0.87865 1.26189 0.91588 0.96983 0.99291 1.69506 1.35212 1.20553 1.17903 0.86123 0.80051 0.81400 0.78316 1.18910 1.19874 1.17911 1.20185 1.18139 1.10362 0.90200 0.92665 0.92434 0.92957 0.89280 0.89762 0.95208 0.93766 0.86516 0.85241 0.89750 0.86950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 9.20 37.16 0.34 -1.20 16 2 C -0.17 -2.56 6.41 -90.62 -0.58 -3.14 16 3 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.18 -2.80 9.82 -26.73 -0.26 -3.06 16 5 C -0.12 -2.32 6.01 -90.62 -0.54 -2.87 16 6 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 7 C 0.09 1.96 5.60 -4.04 -0.02 1.93 16 8 N -0.67 -16.87 10.62 -57.23 -0.61 -17.47 16 9 C 0.28 7.12 6.80 -82.74 -0.56 6.56 16 10 C -0.30 -6.56 9.36 -37.43 -0.35 -6.91 16 11 C 0.12 2.48 11.15 -16.87 -0.19 2.29 16 12 N -0.60 -13.22 4.89 -10.83 -0.05 -13.28 16 13 H 0.41 8.49 6.56 -40.82 -0.27 8.22 16 14 C 0.33 8.17 6.34 -84.16 -0.53 7.64 16 15 C -0.47 -11.22 9.00 -38.06 -0.34 -11.56 16 16 H 0.10 2.41 7.94 -52.49 -0.42 1.99 16 17 C 0.08 1.71 5.06 -17.29 -0.09 1.63 16 18 N -0.80 -17.67 11.42 55.57 0.63 -17.03 16 19 Si 0.92 16.29 29.61 -169.99 -5.03 11.26 16 20 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 21 H -0.27 -4.71 7.11 56.52 0.40 -4.30 16 22 H -0.26 -4.57 7.11 56.52 0.40 -4.16 16 23 C -0.36 -9.37 9.83 -37.82 -0.37 -9.74 16 24 H 0.05 0.73 7.90 -51.93 -0.41 0.32 16 25 H 0.06 0.77 7.83 -51.93 -0.41 0.36 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 1.37 7.94 -51.93 -0.41 0.96 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.03 0.61 4.91 -51.93 -0.25 0.36 16 30 H 0.04 0.91 7.88 -51.93 -0.41 0.51 16 31 H 0.12 2.34 5.97 -52.49 -0.31 2.02 16 32 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 33 H 0.29 5.74 8.29 -40.82 -0.34 5.40 16 34 H 0.11 3.00 8.06 -52.49 -0.42 2.57 16 LS Contribution 286.33 15.07 4.31 4.31 Total: -1.00 -26.99 286.33 -8.81 -35.80 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -4.56 Total: 14.84 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -3.51 Total: -18.44 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.03 Total: -47.78 kcal Atomic # 14 Polarization: 16.29 SS G_CDS: -5.03 Total: 11.26 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.99 -8.81 -35.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380345099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.276 kcal (2) G-P(sol) polarization free energy of solvation -26.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds