Wall clock time and date at job start Mon Mar 30 2020 03:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 115.55439 * 2 1 4 4 C 1.53001 * 117.49620 * 145.67113 * 2 1 3 5 5 C 1.52999 * 117.49523 * 214.29320 * 2 1 3 6 6 H 1.08996 * 117.50223 * 359.97438 * 5 2 1 7 7 C 1.52999 * 117.49877 * 145.02393 * 5 2 1 8 8 N 1.46500 * 109.47262 * 184.99784 * 7 5 2 9 9 C 1.32207 * 120.00167 * 119.09089 * 8 7 5 10 10 C 1.46919 * 120.83524 * 6.05859 * 9 8 7 11 11 C 1.34375 * 119.37067 * 179.97438 * 10 9 8 12 12 N 1.36424 * 121.22123 * 0.02562 * 11 10 9 13 13 H 0.97001 * 119.08343 * 180.02562 * 12 11 10 14 14 C 1.37767 * 121.81927 * 359.97263 * 12 11 10 15 15 C 1.40185 * 119.74036 * 180.02562 * 14 12 11 16 16 H 1.07996 * 119.99764 * 203.13910 * 15 14 12 17 17 C 1.40353 * 119.99615 * 23.14301 * 15 14 12 18 18 N 1.30580 * 120.00597 * 16.61012 * 17 15 14 19 19 Si 1.86807 * 119.99540 * 196.60809 * 17 15 14 20 20 H 1.48493 * 109.47085 * 59.99934 * 19 17 15 21 21 H 1.48498 * 109.47243 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47064 * 300.00125 * 19 17 15 23 23 C 1.39066 * 120.51506 * 359.78478 * 14 12 11 24 24 H 1.08998 * 109.46511 * 325.72378 * 1 2 3 25 25 H 1.08998 * 109.46641 * 85.71636 * 1 2 3 26 26 H 1.08991 * 109.47188 * 205.72208 * 1 2 3 27 27 H 1.08999 * 117.49678 * 214.97851 * 4 2 1 28 28 H 1.08997 * 117.49762 * 359.97438 * 4 2 1 29 29 H 1.08998 * 109.47036 * 304.99827 * 7 5 2 30 30 H 1.08997 * 109.47082 * 64.99828 * 7 5 2 31 31 H 1.08002 * 120.31133 * 359.95667 * 10 9 8 32 32 H 1.08002 * 119.38728 * 180.02562 * 11 10 9 33 33 H 0.97004 * 120.00253 * 180.02562 * 18 17 15 34 34 H 1.07999 * 120.62927 * 180.23724 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1208 0.7654 5 6 2.2364 -1.1213 -0.7647 6 1 1.6112 -1.8591 -1.2674 7 6 3.5490 -0.7765 -1.4712 8 7 4.0084 -1.9354 -2.2406 9 6 4.1473 -1.8451 -3.5523 10 6 3.9744 -0.5590 -4.2412 11 6 4.1229 -0.5008 -5.5754 12 7 4.4306 -1.6138 -6.3019 13 1 4.5310 -1.5363 -7.2636 14 6 4.6039 -2.8444 -5.7072 15 6 4.9200 -3.9595 -6.4958 16 1 4.6975 -4.9540 -6.1386 17 6 5.5258 -3.7832 -7.7496 18 7 6.0871 -2.6428 -8.0491 19 14 5.5293 -5.1802 -8.9898 20 1 4.1302 -5.5552 -9.3168 21 1 6.2270 -4.7432 -10.2257 22 1 6.2340 -6.3529 -8.4124 23 6 4.4724 -2.9881 -4.3303 24 1 -0.3632 0.8492 0.5788 25 1 -0.3632 0.0768 -1.0248 26 1 -0.3633 -0.9258 0.4460 27 1 3.1715 -0.8748 1.2686 28 1 1.6111 -1.8578 1.2692 29 1 3.3890 0.0660 -2.1440 30 1 4.3021 -0.5112 -0.7293 31 1 3.7299 0.3311 -3.6805 32 1 3.9962 0.4445 -6.0820 33 1 6.5054 -2.5210 -8.9158 34 1 4.6116 -3.9511 -3.8618 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380345101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:50 Heat of formation + Delta-G solvation = 50.275602 kcal Electronic energy + Delta-G solvation = -15301.192038 eV Core-core repulsion = 12813.229902 eV Total energy + Delta-G solvation = -2487.962136 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.56472 -37.57125 -34.61414 -33.37145 -30.63901 -29.62465 -27.97172 -26.46709 -24.54403 -21.55810 -21.07907 -20.11537 -19.55525 -17.97348 -16.60707 -15.58137 -15.08140 -14.48972 -14.29441 -13.96255 -13.68771 -13.00370 -12.89024 -12.73210 -12.29756 -11.94329 -11.60863 -11.50918 -11.15222 -11.08309 -10.97634 -10.92987 -10.65614 -10.22789 -9.73154 -9.59883 -9.45944 -9.14066 -8.22054 -7.44563 -7.27016 -5.94674 -4.76039 2.62269 2.76872 2.88241 2.91386 3.18110 3.65429 4.17144 4.28938 4.64351 5.01412 5.26773 5.32621 5.44118 5.51536 5.60968 5.93002 5.96773 6.03504 6.12421 6.19553 6.29492 6.36571 6.52471 6.61673 6.70108 6.72485 6.81089 6.90213 6.99308 7.42358 7.69479 7.78039 8.00180 8.28396 8.31143 8.82376 8.94905 9.72200 9.79018 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.051854 B = 0.004795 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.849910 B = 5838.007402 C = 6016.985445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.171 4.171 3 H 0.096 0.904 4 C -0.177 4.177 5 C -0.119 4.119 6 H 0.098 0.902 7 C 0.089 3.911 8 N -0.669 5.669 9 C 0.282 3.718 10 C -0.303 4.303 11 C 0.126 3.874 12 N -0.602 5.602 13 H 0.413 0.587 14 C 0.331 3.669 15 C -0.468 4.468 16 H 0.103 0.897 17 C 0.077 3.923 18 N -0.815 5.815 19 Si 0.924 3.076 20 H -0.260 1.260 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.358 4.358 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.030 0.970 30 H 0.041 0.959 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.292 0.708 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.980 4.121 0.948 6.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.189 4.189 3 H 0.114 0.886 4 C -0.214 4.214 5 C -0.138 4.138 6 H 0.116 0.884 7 C -0.042 4.042 8 N -0.395 5.395 9 C 0.119 3.881 10 C -0.333 4.333 11 C -0.004 4.004 12 N -0.213 5.213 13 H 0.253 0.747 14 C 0.222 3.778 15 C -0.501 4.501 16 H 0.121 0.879 17 C -0.141 4.141 18 N -0.443 5.443 19 Si 0.748 3.252 20 H -0.184 1.184 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.387 4.387 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.135 0.865 32 H 0.148 0.852 33 H 0.104 0.896 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.783 3.705 1.615 6.262 hybrid contribution 0.060 0.512 -1.275 1.375 sum -4.723 4.217 0.340 6.341 Atomic orbital electron populations 1.21309 0.93484 1.01238 1.01447 1.22389 0.94707 0.94748 1.07084 0.88565 1.23081 1.01820 1.00857 0.95664 1.22580 0.99119 0.99354 0.92718 0.88430 1.21305 0.92242 0.94191 0.96495 1.73350 1.34989 1.26426 1.04753 1.20270 0.87186 0.90183 0.90422 1.22305 1.17295 0.99920 0.93776 1.21235 0.95770 0.90234 0.93176 1.42064 1.61630 1.06205 1.11397 0.74683 1.17619 0.86206 0.82700 0.91265 1.19485 1.35794 0.94707 1.00073 0.87948 1.26188 0.91262 0.97677 0.98976 1.69330 1.25842 1.25839 1.23271 0.86070 0.79901 0.80858 0.78410 1.18416 1.20131 1.18369 1.20213 1.31272 0.97640 0.89607 0.92797 0.92504 0.92866 0.89425 0.89655 0.95223 0.94045 0.86528 0.85228 0.89635 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 10.19 37.16 0.38 -1.10 16 2 C -0.17 -2.54 6.13 -90.62 -0.56 -3.10 16 3 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.18 -2.77 9.82 -26.73 -0.26 -3.04 16 5 C -0.12 -2.20 5.73 -90.62 -0.52 -2.72 16 6 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 7 C 0.09 1.88 6.55 -4.04 -0.03 1.86 16 8 N -0.67 -16.88 10.62 -57.24 -0.61 -17.49 16 9 C 0.28 7.14 6.80 -82.74 -0.56 6.58 16 10 C -0.30 -6.65 9.39 -37.43 -0.35 -7.00 16 11 C 0.13 2.51 11.15 -16.87 -0.19 2.32 16 12 N -0.60 -13.28 4.88 -10.83 -0.05 -13.33 16 13 H 0.41 8.66 6.36 -40.82 -0.26 8.40 16 14 C 0.33 8.18 6.36 -84.16 -0.54 7.65 16 15 C -0.47 -11.17 9.03 -38.06 -0.34 -11.51 16 16 H 0.10 2.38 7.90 -52.49 -0.41 1.96 16 17 C 0.08 1.68 5.19 -17.29 -0.09 1.59 16 18 N -0.81 -17.87 11.12 55.57 0.62 -17.25 16 19 Si 0.92 16.42 29.59 -169.99 -5.03 11.39 16 20 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 21 H -0.28 -4.78 7.11 56.52 0.40 -4.38 16 22 H -0.26 -4.68 7.11 56.52 0.40 -4.27 16 23 C -0.36 -9.34 9.83 -37.82 -0.37 -9.71 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.64 7.90 -51.93 -0.41 0.23 16 27 H 0.09 1.34 8.03 -51.93 -0.42 0.92 16 28 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 29 H 0.03 0.61 5.22 -51.93 -0.27 0.34 16 30 H 0.04 0.86 7.87 -51.93 -0.41 0.46 16 31 H 0.12 2.34 5.90 -52.49 -0.31 2.03 16 32 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.29 5.79 8.29 -40.82 -0.34 5.45 16 34 H 0.11 3.00 8.06 -52.49 -0.42 2.57 16 LS Contribution 287.90 15.07 4.34 4.34 Total: -1.00 -26.91 287.90 -8.74 -35.65 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -4.58 Total: 14.86 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -3.43 Total: -18.17 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.04 Total: -48.07 kcal Atomic # 14 Polarization: 16.42 SS G_CDS: -5.03 Total: 11.39 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.91 -8.74 -35.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380345101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.923 kcal (2) G-P(sol) polarization free energy of solvation -26.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds