Wall clock time and date at job start Mon Mar 30 2020 03:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 115.55439 * 2 1 4 4 C 1.53001 * 117.49620 * 145.67113 * 2 1 3 5 5 C 1.52999 * 117.49523 * 214.29320 * 2 1 3 6 6 H 1.08996 * 117.50223 * 359.97438 * 5 2 1 7 7 C 1.52999 * 117.49877 * 145.02393 * 5 2 1 8 8 N 1.46500 * 109.47262 * 184.99784 * 7 5 2 9 9 C 1.32207 * 120.00167 * 119.09089 * 8 7 5 10 10 C 1.46919 * 120.83524 * 6.05859 * 9 8 7 11 11 C 1.34375 * 119.37067 * 179.97438 * 10 9 8 12 12 N 1.36424 * 121.22123 * 0.02562 * 11 10 9 13 13 H 0.97001 * 119.08343 * 180.02562 * 12 11 10 14 14 C 1.37767 * 121.81927 * 359.97263 * 12 11 10 15 15 C 1.40185 * 119.74036 * 180.02562 * 14 12 11 16 16 H 1.07996 * 119.99764 * 203.13910 * 15 14 12 17 17 C 1.40353 * 119.99615 * 23.14301 * 15 14 12 18 18 N 1.30580 * 120.00597 * 16.61012 * 17 15 14 19 19 Si 1.86807 * 119.99540 * 196.60809 * 17 15 14 20 20 H 1.48493 * 109.47085 * 59.99934 * 19 17 15 21 21 H 1.48498 * 109.47243 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47064 * 300.00125 * 19 17 15 23 23 C 1.39066 * 120.51506 * 359.78478 * 14 12 11 24 24 H 1.08998 * 109.46511 * 325.72378 * 1 2 3 25 25 H 1.08998 * 109.46641 * 85.71636 * 1 2 3 26 26 H 1.08991 * 109.47188 * 205.72208 * 1 2 3 27 27 H 1.08999 * 117.49678 * 214.97851 * 4 2 1 28 28 H 1.08997 * 117.49762 * 359.97438 * 4 2 1 29 29 H 1.08998 * 109.47036 * 304.99827 * 7 5 2 30 30 H 1.08997 * 109.47082 * 64.99828 * 7 5 2 31 31 H 1.08002 * 120.31133 * 359.95667 * 10 9 8 32 32 H 1.08002 * 119.38728 * 180.02562 * 11 10 9 33 33 H 0.97004 * 120.00253 * 180.02562 * 18 17 15 34 34 H 1.07999 * 120.62927 * 180.23724 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1208 0.7654 5 6 2.2364 -1.1213 -0.7647 6 1 1.6112 -1.8591 -1.2674 7 6 3.5490 -0.7765 -1.4712 8 7 4.0084 -1.9354 -2.2406 9 6 4.1473 -1.8451 -3.5523 10 6 3.9744 -0.5590 -4.2412 11 6 4.1229 -0.5008 -5.5754 12 7 4.4306 -1.6138 -6.3019 13 1 4.5310 -1.5363 -7.2636 14 6 4.6039 -2.8444 -5.7072 15 6 4.9200 -3.9595 -6.4958 16 1 4.6975 -4.9540 -6.1386 17 6 5.5258 -3.7832 -7.7496 18 7 6.0871 -2.6428 -8.0491 19 14 5.5293 -5.1802 -8.9898 20 1 4.1302 -5.5552 -9.3168 21 1 6.2270 -4.7432 -10.2257 22 1 6.2340 -6.3529 -8.4124 23 6 4.4724 -2.9881 -4.3303 24 1 -0.3632 0.8492 0.5788 25 1 -0.3632 0.0768 -1.0248 26 1 -0.3633 -0.9258 0.4460 27 1 3.1715 -0.8748 1.2686 28 1 1.6111 -1.8578 1.2692 29 1 3.3890 0.0660 -2.1440 30 1 4.3021 -0.5112 -0.7293 31 1 3.7299 0.3311 -3.6805 32 1 3.9962 0.4445 -6.0820 33 1 6.5054 -2.5210 -8.9158 34 1 4.6116 -3.9511 -3.8618 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380345101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:50 Heat of formation + Delta-G solvation = 34.768845 kcal Electronic energy + Delta-G solvation = -15301.864461 eV Core-core repulsion = 12813.229902 eV Total energy + Delta-G solvation = -2488.634559 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.31937 -38.92925 -36.35781 -35.11238 -32.42586 -31.19269 -29.33637 -28.16889 -26.20757 -23.29137 -22.58717 -21.54526 -21.04499 -19.74650 -18.38688 -17.21646 -16.69601 -16.13642 -15.74641 -15.39713 -15.33645 -14.57829 -14.43657 -14.01348 -13.71681 -13.44041 -13.18093 -12.91065 -12.82464 -12.58356 -12.50565 -12.33215 -12.24141 -11.86050 -11.36265 -11.24697 -10.81255 -10.60935 -9.99865 -9.23751 -8.97559 -7.75380 -6.65349 0.95361 1.07862 1.42392 1.53644 1.63354 2.16370 2.55129 2.86644 2.93132 3.46221 3.81834 4.01567 4.04109 4.11750 4.40327 4.46641 4.61309 4.65185 4.88096 4.90537 4.93126 4.95235 4.99924 5.06495 5.12919 5.17721 5.20201 5.34881 5.47836 5.64688 5.82881 5.99002 6.09730 6.46362 6.50790 7.00006 7.19672 7.97828 8.03991 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.051854 B = 0.004795 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.849910 B = 5838.007402 C = 6016.985445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.144 4.144 3 H 0.108 0.892 4 C -0.170 4.170 5 C -0.152 4.152 6 H 0.073 0.927 7 C 0.092 3.908 8 N -0.708 5.708 9 C 0.263 3.737 10 C -0.323 4.323 11 C 0.140 3.860 12 N -0.601 5.601 13 H 0.418 0.582 14 C 0.322 3.678 15 C -0.496 4.496 16 H 0.095 0.905 17 C 0.051 3.949 18 N -0.822 5.822 19 Si 0.996 3.004 20 H -0.256 1.256 21 H -0.260 1.260 22 H -0.264 1.264 23 C -0.405 4.405 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.033 0.967 30 H 0.039 0.961 31 H 0.135 0.865 32 H 0.186 0.814 33 H 0.307 0.693 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.486 5.460 -0.415 7.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.163 4.163 3 H 0.126 0.874 4 C -0.207 4.207 5 C -0.171 4.171 6 H 0.091 0.909 7 C -0.039 4.039 8 N -0.435 5.435 9 C 0.100 3.900 10 C -0.352 4.352 11 C 0.011 3.989 12 N -0.213 5.213 13 H 0.260 0.740 14 C 0.213 3.787 15 C -0.528 4.528 16 H 0.113 0.887 17 C -0.167 4.167 18 N -0.449 5.449 19 Si 0.816 3.184 20 H -0.180 1.180 21 H -0.184 1.184 22 H -0.189 1.189 23 C -0.434 4.434 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.153 0.847 32 H 0.203 0.797 33 H 0.119 0.881 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.290 5.078 0.264 7.338 hybrid contribution 0.286 0.091 -0.899 0.948 sum -5.004 5.169 -0.635 7.223 Atomic orbital electron populations 1.21354 0.91513 1.02625 1.01943 1.22525 0.96146 0.94155 1.03447 0.87439 1.23171 1.02456 1.01601 0.93441 1.22338 0.98458 1.01905 0.94373 0.90910 1.21309 0.93370 0.93139 0.96108 1.73228 1.35621 1.29124 1.05515 1.20471 0.87294 0.91459 0.90794 1.22372 1.19011 0.99026 0.94815 1.21934 0.92876 0.91324 0.92778 1.42082 1.61566 1.05962 1.11700 0.74021 1.17722 0.85912 0.84209 0.90891 1.19714 1.37020 0.94411 1.01616 0.88660 1.26928 0.89958 1.00309 0.99547 1.69307 1.24419 1.26959 1.24252 0.85005 0.80024 0.77284 0.76101 1.18011 1.18358 1.18894 1.20155 1.35130 0.97255 0.90873 0.90197 0.92653 0.92531 0.89068 0.88367 0.94930 0.94314 0.84741 0.79712 0.88119 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 10.19 71.98 0.73 -1.95 16 2 C -0.14 -4.06 6.13 -10.79 -0.07 -4.12 16 3 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 4 C -0.17 -5.16 9.82 30.60 0.30 -4.86 16 5 C -0.15 -5.70 5.73 -10.79 -0.06 -5.76 16 6 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 7 C 0.09 3.98 6.55 86.38 0.57 4.55 16 8 N -0.71 -37.58 10.62 -335.01 -3.56 -41.13 16 9 C 0.26 13.90 6.80 42.30 0.29 14.19 16 10 C -0.32 -14.16 9.39 23.66 0.22 -13.94 16 11 C 0.14 5.38 11.15 83.10 0.93 6.31 16 12 N -0.60 -26.21 4.88 -188.18 -0.92 -27.13 16 13 H 0.42 16.95 6.36 -92.71 -0.59 16.36 16 14 C 0.32 16.42 6.36 38.88 0.25 16.66 16 15 C -0.50 -24.17 9.03 23.26 0.21 -23.96 16 16 H 0.10 4.63 7.90 -2.91 -0.02 4.61 16 17 C 0.05 2.15 5.19 85.39 0.44 2.59 16 18 N -0.82 -34.63 11.12 21.89 0.24 -34.39 16 19 Si 1.00 32.27 29.59 68.60 2.03 34.30 16 20 H -0.26 -8.15 7.11 99.48 0.71 -7.45 16 21 H -0.26 -7.71 7.11 99.48 0.71 -7.00 16 22 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 23 C -0.40 -22.47 9.83 23.41 0.23 -22.24 16 24 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 26 H 0.06 1.25 7.90 -2.39 -0.02 1.23 16 27 H 0.09 2.70 8.03 -2.39 -0.02 2.68 16 28 H 0.10 2.71 8.05 -2.39 -0.02 2.69 16 29 H 0.03 1.36 5.22 -2.39 -0.01 1.35 16 30 H 0.04 1.65 7.87 -2.39 -0.02 1.64 16 31 H 0.14 5.30 5.90 -2.91 -0.02 5.28 16 32 H 0.19 4.97 8.06 -2.91 -0.02 4.95 16 33 H 0.31 11.34 8.29 -92.71 -0.77 10.57 16 34 H 0.08 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -60.96 287.90 2.34 -58.61 By element: Atomic # 1 Polarization: 41.76 SS G_CDS: 0.51 Total: 42.27 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 4.04 Total: -32.54 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -4.23 Total: -102.65 kcal Atomic # 14 Polarization: 32.27 SS G_CDS: 2.03 Total: 34.30 kcal Total: -60.96 2.34 -58.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380345101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.379 kcal (2) G-P(sol) polarization free energy of solvation -60.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds