Wall clock time and date at job start Mon Mar 30 2020 03:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 115.55246 * 2 1 4 4 C 1.52999 * 117.50269 * 214.27759 * 2 1 3 5 5 C 1.52997 * 60.00227 * 252.51778 * 4 2 1 6 6 H 1.09004 * 117.51798 * 107.48228 * 5 4 2 7 7 C 1.53005 * 117.49672 * 252.50708 * 5 4 2 8 8 N 1.46497 * 109.47025 * 243.62582 * 7 5 4 9 9 C 1.32215 * 119.99906 * 114.08034 * 8 7 5 10 10 C 1.46908 * 120.83476 * 355.85615 * 9 8 7 11 11 C 1.34379 * 119.37203 * 180.02562 * 10 9 8 12 12 N 1.36422 * 121.21766 * 359.97438 * 11 10 9 13 13 H 0.96999 * 119.09048 * 180.02562 * 12 11 10 14 14 C 1.37770 * 121.82330 * 0.02562 * 12 11 10 15 15 C 1.40170 * 119.74629 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00219 * 204.20850 * 15 14 12 17 17 C 1.40358 * 119.99967 * 24.20595 * 15 14 12 18 18 N 1.30579 * 120.00155 * 15.56401 * 17 15 14 19 19 Si 1.86797 * 119.99872 * 195.56447 * 17 15 14 20 20 H 1.48496 * 109.47419 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47122 * 120.00279 * 19 17 15 22 22 H 1.48507 * 109.47107 * 239.99834 * 19 17 15 23 23 C 1.39067 * 120.51207 * 359.97438 * 14 12 11 24 24 H 1.08998 * 109.47688 * 274.34104 * 1 2 3 25 25 H 1.09000 * 109.47035 * 34.33964 * 1 2 3 26 26 H 1.09002 * 109.46960 * 154.33699 * 1 2 3 27 27 H 1.08997 * 117.49799 * 145.02096 * 4 2 1 28 28 H 1.09005 * 117.49593 * 0.02562 * 4 2 1 29 29 H 1.09001 * 109.46946 * 123.62077 * 7 5 4 30 30 H 1.09003 * 109.47084 * 3.62747 * 7 5 4 31 31 H 1.08005 * 120.31640 * 359.74199 * 10 9 8 32 32 H 1.07999 * 119.38841 * 180.02562 * 11 10 9 33 33 H 0.96994 * 120.00560 * 179.97438 * 18 17 15 34 34 H 1.07997 * 120.63018 * 180.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1214 -0.7643 5 6 2.2363 -1.1206 0.7657 6 1 1.6110 -1.8577 1.2696 7 6 3.5489 -0.7753 1.4721 8 7 4.0083 -1.9336 2.2424 9 6 5.1252 -2.5535 1.9014 10 6 5.8720 -2.1537 0.7011 11 6 7.0035 -2.8043 0.3817 12 7 7.4716 -3.8286 1.1516 13 1 8.2920 -4.2766 0.8925 14 6 6.8114 -4.2443 2.2871 15 6 7.3312 -5.3020 3.0460 16 1 6.6773 -5.8877 3.6750 17 6 8.7016 -5.6000 2.9882 18 7 9.5378 -4.7324 2.4851 19 14 9.3291 -7.2377 3.6312 20 1 8.1887 -8.0369 4.1468 21 1 9.9961 -7.9787 2.5307 22 1 10.3017 -6.9991 4.7278 23 6 5.6332 -3.6226 2.6863 24 1 -0.3634 0.0778 1.0247 25 1 -0.3633 0.8485 -0.5797 26 1 -0.3633 -0.9263 -0.4451 27 1 3.1716 -0.8758 -1.2677 28 1 1.6112 -1.8590 -1.2676 29 1 3.3889 0.0678 2.1441 30 1 4.3021 -0.5105 0.7300 31 1 5.5125 -1.3475 0.0787 32 1 7.5530 -2.5103 -0.5004 33 1 10.4848 -4.9381 2.4455 34 1 5.1143 -3.9467 3.5763 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380345102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:52 Heat of formation + Delta-G solvation = 49.740342 kcal Electronic energy + Delta-G solvation = -15358.388494 eV Core-core repulsion = 12870.403147 eV Total energy + Delta-G solvation = -2487.985346 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.57491 -37.59367 -34.58340 -33.36157 -30.63598 -29.60864 -28.00153 -26.44047 -24.59491 -21.62594 -20.96706 -20.13432 -19.55331 -17.99283 -16.60439 -15.49831 -15.08356 -14.67226 -14.46716 -13.84174 -13.33073 -13.09931 -12.87273 -12.74380 -12.22175 -12.09063 -11.71274 -11.55468 -11.18023 -11.12295 -10.92439 -10.85827 -10.62436 -10.20414 -9.81234 -9.69622 -9.23862 -9.19630 -8.21107 -7.47722 -7.26967 -5.93483 -4.76531 2.59530 2.77048 2.89308 2.96323 3.16974 3.66250 4.15997 4.31141 4.64584 5.01052 5.26992 5.31152 5.38084 5.51283 5.61153 5.88732 5.94511 6.00809 6.13166 6.17723 6.33205 6.40869 6.51474 6.65340 6.69325 6.75042 6.79723 6.90771 6.94863 7.42710 7.69735 7.78693 8.00199 8.28827 8.31822 8.82552 8.94971 9.73185 9.78506 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.061174 B = 0.004803 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.597673 B = 5828.391781 C = 6041.366436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.168 4.168 3 H 0.096 0.904 4 C -0.181 4.181 5 C -0.124 4.124 6 H 0.101 0.899 7 C 0.089 3.911 8 N -0.669 5.669 9 C 0.283 3.717 10 C -0.301 4.301 11 C 0.125 3.875 12 N -0.602 5.602 13 H 0.413 0.587 14 C 0.331 3.669 15 C -0.467 4.467 16 H 0.103 0.897 17 C 0.076 3.924 18 N -0.816 5.816 19 Si 0.924 3.076 20 H -0.255 1.255 21 H -0.270 1.270 22 H -0.271 1.271 23 C -0.357 4.357 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.027 0.973 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.291 0.709 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 1.673 -5.755 6.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.187 4.187 3 H 0.115 0.885 4 C -0.218 4.218 5 C -0.143 4.143 6 H 0.119 0.881 7 C -0.042 4.042 8 N -0.394 5.394 9 C 0.120 3.880 10 C -0.331 4.331 11 C -0.005 4.005 12 N -0.212 5.212 13 H 0.253 0.747 14 C 0.222 3.778 15 C -0.500 4.500 16 H 0.121 0.879 17 C -0.142 4.142 18 N -0.444 5.444 19 Si 0.747 3.253 20 H -0.179 1.179 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.386 4.386 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.102 0.898 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.903 1.800 -5.193 6.215 hybrid contribution 1.255 -0.336 -0.755 1.503 sum -1.647 1.464 -5.948 6.343 Atomic orbital electron populations 1.21309 0.93477 1.01220 1.01452 1.22360 0.94703 0.94708 1.06907 0.88533 1.23108 1.01890 1.01052 0.95766 1.22674 0.99611 0.99638 0.92334 0.88115 1.21349 0.92488 0.95497 0.94912 1.73372 1.17582 1.14670 1.33812 1.20252 0.88489 0.91220 0.88032 1.22285 1.00118 1.06725 1.03940 1.21234 0.95214 0.89635 0.94412 1.42055 1.26697 1.30559 1.21937 0.74708 1.17630 0.88643 0.88865 0.82652 1.19550 0.93241 1.13179 1.24060 0.87894 1.26189 0.96678 0.98502 0.92796 1.69338 1.05274 1.33526 1.36262 0.85976 0.79522 0.80530 0.79252 1.17852 1.19481 1.19568 1.20242 1.03911 1.07427 1.07041 0.92444 0.92816 0.92905 0.89535 0.89660 0.93420 0.95502 0.86633 0.85271 0.89771 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 10.19 37.16 0.38 -1.07 16 2 C -0.17 -2.49 6.13 -90.62 -0.56 -3.04 16 3 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.18 -2.87 9.82 -26.73 -0.26 -3.13 16 5 C -0.12 -2.27 5.73 -90.62 -0.52 -2.79 16 6 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 7 C 0.09 1.88 6.52 -4.04 -0.03 1.85 16 8 N -0.67 -16.81 10.62 -57.24 -0.61 -17.42 16 9 C 0.28 7.15 6.80 -82.74 -0.56 6.59 16 10 C -0.30 -6.60 9.36 -37.44 -0.35 -6.95 16 11 C 0.12 2.50 11.15 -16.87 -0.19 2.31 16 12 N -0.60 -13.30 4.87 -10.84 -0.05 -13.35 16 13 H 0.41 8.69 6.40 -40.82 -0.26 8.43 16 14 C 0.33 8.19 6.35 -84.16 -0.53 7.66 16 15 C -0.47 -11.18 9.03 -38.06 -0.34 -11.52 16 16 H 0.10 2.41 7.90 -52.49 -0.41 1.99 16 17 C 0.08 1.66 5.20 -17.29 -0.09 1.57 16 18 N -0.82 -17.94 11.13 55.57 0.62 -17.32 16 19 Si 0.92 16.47 29.59 -169.99 -5.03 11.44 16 20 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 21 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 22 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 23 C -0.36 -9.31 9.83 -37.82 -0.37 -9.68 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.63 7.90 -51.93 -0.41 0.22 16 27 H 0.09 1.35 8.03 -51.93 -0.42 0.93 16 28 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.03 0.55 5.01 -51.93 -0.26 0.29 16 31 H 0.12 2.33 5.95 -52.48 -0.31 2.01 16 32 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.29 5.75 8.29 -40.82 -0.34 5.41 16 34 H 0.11 3.00 8.06 -52.49 -0.42 2.57 16 LS Contribution 287.97 15.07 4.34 4.34 Total: -1.00 -26.88 287.97 -8.74 -35.63 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -4.59 Total: 14.89 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -3.43 Total: -18.21 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.04 Total: -48.09 kcal Atomic # 14 Polarization: 16.47 SS G_CDS: -5.03 Total: 11.44 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.88 -8.74 -35.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380345102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.369 kcal (2) G-P(sol) polarization free energy of solvation -26.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds