Wall clock time and date at job start Mon Mar 30 2020 03:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 115.55246 * 2 1 4 4 C 1.52999 * 117.50269 * 214.27759 * 2 1 3 5 5 C 1.52997 * 60.00227 * 252.51778 * 4 2 1 6 6 H 1.09004 * 117.51798 * 107.48228 * 5 4 2 7 7 C 1.53005 * 117.49672 * 252.50708 * 5 4 2 8 8 N 1.46497 * 109.47025 * 243.62582 * 7 5 4 9 9 C 1.32215 * 119.99906 * 114.08034 * 8 7 5 10 10 C 1.46908 * 120.83476 * 355.85615 * 9 8 7 11 11 C 1.34379 * 119.37203 * 180.02562 * 10 9 8 12 12 N 1.36422 * 121.21766 * 359.97438 * 11 10 9 13 13 H 0.96999 * 119.09048 * 180.02562 * 12 11 10 14 14 C 1.37770 * 121.82330 * 0.02562 * 12 11 10 15 15 C 1.40170 * 119.74629 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00219 * 204.20850 * 15 14 12 17 17 C 1.40358 * 119.99967 * 24.20595 * 15 14 12 18 18 N 1.30579 * 120.00155 * 15.56401 * 17 15 14 19 19 Si 1.86797 * 119.99872 * 195.56447 * 17 15 14 20 20 H 1.48496 * 109.47419 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47122 * 120.00279 * 19 17 15 22 22 H 1.48507 * 109.47107 * 239.99834 * 19 17 15 23 23 C 1.39067 * 120.51207 * 359.97438 * 14 12 11 24 24 H 1.08998 * 109.47688 * 274.34104 * 1 2 3 25 25 H 1.09000 * 109.47035 * 34.33964 * 1 2 3 26 26 H 1.09002 * 109.46960 * 154.33699 * 1 2 3 27 27 H 1.08997 * 117.49799 * 145.02096 * 4 2 1 28 28 H 1.09005 * 117.49593 * 0.02562 * 4 2 1 29 29 H 1.09001 * 109.46946 * 123.62077 * 7 5 4 30 30 H 1.09003 * 109.47084 * 3.62747 * 7 5 4 31 31 H 1.08005 * 120.31640 * 359.74199 * 10 9 8 32 32 H 1.07999 * 119.38841 * 180.02562 * 11 10 9 33 33 H 0.96994 * 120.00560 * 179.97438 * 18 17 15 34 34 H 1.07997 * 120.63018 * 180.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1214 -0.7643 5 6 2.2363 -1.1206 0.7657 6 1 1.6110 -1.8577 1.2696 7 6 3.5489 -0.7753 1.4721 8 7 4.0083 -1.9336 2.2424 9 6 5.1252 -2.5535 1.9014 10 6 5.8720 -2.1537 0.7011 11 6 7.0035 -2.8043 0.3817 12 7 7.4716 -3.8286 1.1516 13 1 8.2920 -4.2766 0.8925 14 6 6.8114 -4.2443 2.2871 15 6 7.3312 -5.3020 3.0460 16 1 6.6773 -5.8877 3.6750 17 6 8.7016 -5.6000 2.9882 18 7 9.5378 -4.7324 2.4851 19 14 9.3291 -7.2377 3.6312 20 1 8.1887 -8.0369 4.1468 21 1 9.9961 -7.9787 2.5307 22 1 10.3017 -6.9991 4.7278 23 6 5.6332 -3.6226 2.6863 24 1 -0.3634 0.0778 1.0247 25 1 -0.3633 0.8485 -0.5797 26 1 -0.3633 -0.9263 -0.4451 27 1 3.1716 -0.8758 -1.2677 28 1 1.6112 -1.8590 -1.2676 29 1 3.3889 0.0678 2.1441 30 1 4.3021 -0.5105 0.7300 31 1 5.5125 -1.3475 0.0787 32 1 7.5530 -2.5103 -0.5004 33 1 10.4848 -4.9381 2.4455 34 1 5.1143 -3.9467 3.5763 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380345102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:52 Heat of formation + Delta-G solvation = 34.283176 kcal Electronic energy + Delta-G solvation = -15359.058767 eV Core-core repulsion = 12870.403147 eV Total energy + Delta-G solvation = -2488.655619 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.32459 -38.95430 -36.32261 -35.10121 -32.42091 -31.18328 -29.35314 -28.13553 -26.25962 -23.34076 -22.49619 -21.54771 -21.04001 -19.76586 -18.38425 -17.14918 -16.65973 -16.35888 -15.86164 -15.44993 -14.76599 -14.62272 -14.47945 -14.14380 -13.72908 -13.32180 -13.20759 -13.10520 -12.83116 -12.64879 -12.42036 -12.38952 -12.17281 -11.83425 -11.36519 -11.29183 -10.79616 -10.53052 -9.98766 -9.28120 -8.97540 -7.74103 -6.65825 0.94610 1.08310 1.42725 1.57079 1.60996 2.17076 2.55371 2.88605 2.93020 3.48116 3.75155 3.98837 4.05131 4.12243 4.37316 4.42378 4.64071 4.76013 4.88239 4.89947 4.94045 4.95880 5.00059 5.05801 5.12270 5.16743 5.21071 5.33712 5.47439 5.64989 5.82751 5.99513 6.09995 6.46499 6.51720 7.00277 7.19717 7.97772 8.05022 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.061174 B = 0.004803 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.597673 B = 5828.391781 C = 6041.366436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.142 4.142 3 H 0.107 0.893 4 C -0.173 4.173 5 C -0.155 4.155 6 H 0.078 0.922 7 C 0.091 3.909 8 N -0.707 5.707 9 C 0.264 3.736 10 C -0.319 4.319 11 C 0.139 3.861 12 N -0.601 5.601 13 H 0.418 0.582 14 C 0.323 3.677 15 C -0.495 4.495 16 H 0.095 0.905 17 C 0.050 3.950 18 N -0.824 5.824 19 Si 0.997 3.003 20 H -0.262 1.262 21 H -0.253 1.253 22 H -0.266 1.266 23 C -0.404 4.404 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.134 0.866 32 H 0.185 0.815 33 H 0.306 0.694 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 1.641 -7.574 7.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.161 4.161 3 H 0.125 0.875 4 C -0.210 4.210 5 C -0.174 4.174 6 H 0.096 0.904 7 C -0.040 4.040 8 N -0.434 5.434 9 C 0.101 3.899 10 C -0.349 4.349 11 C 0.010 3.990 12 N -0.213 5.213 13 H 0.259 0.741 14 C 0.213 3.787 15 C -0.527 4.527 16 H 0.113 0.887 17 C -0.168 4.168 18 N -0.451 5.451 19 Si 0.816 3.184 20 H -0.186 1.186 21 H -0.177 1.177 22 H -0.190 1.190 23 C -0.433 4.433 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.152 0.848 32 H 0.202 0.798 33 H 0.118 0.882 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.615 1.798 -7.033 7.436 hybrid contribution 0.929 -0.325 -0.152 0.996 sum -0.686 1.473 -7.184 7.366 Atomic orbital electron populations 1.21354 0.91473 1.02562 1.02034 1.22498 0.96191 0.94099 1.03318 0.87487 1.23188 1.02527 1.01749 0.93552 1.22415 0.98915 1.02173 0.93925 0.90410 1.21334 0.93910 0.93986 0.94741 1.73248 1.18150 1.16208 1.35778 1.20444 0.88967 0.91146 0.89347 1.22342 1.00966 1.08176 1.03378 1.21931 0.94539 0.87658 0.94917 1.42071 1.26704 1.31176 1.21320 0.74059 1.17725 0.88407 0.88861 0.83685 1.19756 0.94677 1.13512 1.24797 0.88736 1.26926 0.95763 1.01602 0.92512 1.69311 1.06303 1.34601 1.34894 0.84909 0.78558 0.75864 0.79040 1.18597 1.17703 1.19040 1.20191 1.05723 1.09827 1.07595 0.92464 0.90287 0.92576 0.89073 0.88555 0.94056 0.94970 0.84834 0.79785 0.88189 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 10.19 71.98 0.73 -1.90 16 2 C -0.14 -3.98 6.13 -10.79 -0.07 -4.04 16 3 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 4 C -0.17 -5.24 9.82 30.59 0.30 -4.94 16 5 C -0.16 -5.77 5.73 -10.79 -0.06 -5.83 16 6 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 7 C 0.09 3.95 6.52 86.38 0.56 4.51 16 8 N -0.71 -37.39 10.62 -335.00 -3.56 -40.95 16 9 C 0.26 13.91 6.80 42.30 0.29 14.19 16 10 C -0.32 -13.92 9.36 23.66 0.22 -13.69 16 11 C 0.14 5.31 11.15 83.10 0.93 6.24 16 12 N -0.60 -26.18 4.87 -188.19 -0.92 -27.09 16 13 H 0.42 16.95 6.40 -92.71 -0.59 16.36 16 14 C 0.32 16.43 6.35 38.88 0.25 16.68 16 15 C -0.50 -24.20 9.03 23.26 0.21 -23.99 16 16 H 0.09 4.63 7.90 -2.91 -0.02 4.61 16 17 C 0.05 2.12 5.20 85.40 0.44 2.56 16 18 N -0.82 -34.76 11.13 21.89 0.24 -34.52 16 19 Si 1.00 32.40 29.59 68.60 2.03 34.43 16 20 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 21 H -0.25 -7.58 7.11 99.48 0.71 -6.87 16 22 H -0.27 -8.45 7.11 99.48 0.71 -7.74 16 23 C -0.40 -22.40 9.83 23.41 0.23 -22.17 16 24 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.23 7.90 -2.39 -0.02 1.21 16 27 H 0.09 2.67 8.03 -2.39 -0.02 2.65 16 28 H 0.10 2.68 8.05 -2.38 -0.02 2.66 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.03 1.33 5.01 -2.39 -0.01 1.32 16 31 H 0.13 5.22 5.95 -2.91 -0.02 5.20 16 32 H 0.19 4.95 8.06 -2.91 -0.02 4.92 16 33 H 0.31 11.27 8.29 -92.71 -0.77 10.50 16 34 H 0.08 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -60.79 287.97 2.34 -58.45 By element: Atomic # 1 Polarization: 41.55 SS G_CDS: 0.51 Total: 42.06 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 4.03 Total: -32.38 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -4.23 Total: -102.56 kcal Atomic # 14 Polarization: 32.40 SS G_CDS: 2.03 Total: 34.43 kcal Total: -60.79 2.34 -58.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380345102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.736 kcal (2) G-P(sol) polarization free energy of solvation -60.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds