Wall clock time and date at job start Mon Mar 30 2020 03:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99649 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99944 * 3 2 1 7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.45504 * 122.42673 * 179.97438 * 13 11 10 15 15 C 1.54556 * 113.16118 * 181.07863 * 14 13 11 16 16 S 1.84210 * 101.32706 * 23.09440 * 15 14 13 17 17 C 1.47600 * 122.43306 * 359.70708 * 13 11 10 18 18 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 19 19 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 20 20 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 21 21 H 1.09001 * 108.75427 * 302.04464 * 14 13 11 22 22 H 1.09004 * 108.74967 * 60.26701 * 14 13 11 23 23 H 1.09003 * 111.05366 * 141.10875 * 15 14 13 24 24 H 1.09002 * 111.05202 * 265.04010 * 15 14 13 25 25 H 1.09004 * 110.77994 * 273.48066 * 17 13 11 26 26 H 1.09001 * 110.77570 * 36.90273 * 17 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 2.3919 -7.7263 0.0003 15 6 3.5534 -8.7455 0.0276 16 16 4.9080 -7.7309 0.7549 17 6 4.3088 -6.1624 -0.0050 18 1 -0.4850 0.8401 -0.0004 19 1 3.1243 -3.7315 -0.8895 20 1 3.1244 -3.7315 0.8905 21 1 1.7622 -7.8891 0.8750 22 1 1.7968 -7.9003 -0.8962 23 1 3.3139 -9.5951 0.6670 24 1 3.8082 -9.0758 -0.9795 25 1 4.6818 -6.0567 -1.0238 26 1 4.5947 -5.3043 0.6034 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388403408.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:22 Heat of formation + Delta-G solvation = -28.128096 kcal Electronic energy + Delta-G solvation = -12019.826702 eV Core-core repulsion = 9737.276698 eV Total energy + Delta-G solvation = -2282.550004 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 233.028 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.60446 -36.11347 -32.46486 -31.73283 -28.81255 -27.25298 -25.53393 -23.07364 -19.64132 -17.82375 -17.41381 -16.59318 -16.20127 -15.00070 -14.83131 -14.59623 -13.95192 -13.73709 -13.36645 -12.87078 -12.63118 -12.45076 -12.24125 -11.79179 -11.09048 -11.06049 -10.80639 -10.64102 -9.87498 -9.54949 -9.09343 -8.79484 -8.30352 -8.12511 -6.55765 -6.25077 -3.96783 1.40451 1.77932 2.65476 2.89419 3.21128 3.21734 3.26980 3.47919 4.11193 4.17878 4.59682 4.82307 4.89398 5.06415 5.10252 5.10960 5.43497 5.48587 5.61928 5.78638 6.02703 6.22615 7.21077 7.55878 8.31255 8.34122 9.20087 10.82290 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.053951 B = 0.005690 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.861574 B = 4919.619226 C = 5380.777126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.057 6.057 10 C -0.151 4.151 11 C 0.546 3.454 12 O -0.505 6.505 13 N -0.624 5.624 14 C 0.103 3.897 15 C -0.069 4.069 16 S -0.283 6.283 17 C 0.161 3.839 18 H 0.270 0.730 19 H 0.092 0.908 20 H 0.092 0.908 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.120 0.880 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.283 -14.216 -0.779 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.301 4.301 11 C 0.333 3.667 12 O -0.378 6.378 13 N -0.364 5.364 14 C -0.021 4.021 15 C -0.218 4.218 16 S -0.057 6.057 17 C -0.073 4.073 18 H 0.079 0.921 19 H 0.110 0.890 20 H 0.110 0.890 21 H 0.098 0.902 22 H 0.098 0.902 23 H 0.138 0.862 24 H 0.119 0.881 25 H 0.115 0.885 26 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.258 -14.656 -0.042 16.822 hybrid contribution 1.191 1.484 -0.710 2.031 sum 9.449 -13.171 -0.752 16.227 Atomic orbital electron populations 1.70005 1.05969 1.27658 1.46598 1.24995 0.95039 0.99051 0.94425 0.86211 0.79239 0.81145 0.78841 1.19904 1.20779 1.19885 1.22814 0.94889 0.91524 1.59328 0.90887 1.85418 1.04589 0.96332 1.96737 1.23566 1.06855 0.94725 1.05003 1.20241 0.85807 0.85646 0.74982 1.90725 1.14826 1.85105 1.47134 1.48570 1.05243 1.05758 1.76812 1.21498 0.95928 0.80521 1.04193 1.24527 0.93142 0.99645 1.04468 1.88389 1.40852 1.07326 1.69165 1.24276 0.82005 0.97752 1.03315 0.92060 0.89005 0.88982 0.90166 0.90234 0.86193 0.88137 0.88500 0.86461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.93 13.22 55.49 0.73 -25.19 15 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 15 3 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 15 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 7 C -0.54 -15.11 9.50 30.94 0.29 -14.82 15 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 15 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 15 10 C -0.15 -3.00 4.94 36.01 0.18 -2.82 15 11 C 0.55 10.23 7.77 -10.98 -0.09 10.14 15 12 O -0.51 -11.37 16.00 5.56 0.09 -11.28 15 13 N -0.62 -8.83 3.23 -175.31 -0.57 -9.39 15 14 C 0.10 1.18 6.11 -3.76 -0.02 1.16 15 15 C -0.07 -0.57 7.59 37.97 0.29 -0.29 15 16 S -0.28 -3.06 23.44 -107.50 -2.52 -5.58 15 17 C 0.16 1.81 7.23 60.45 0.44 2.25 15 18 H 0.27 7.50 8.31 -40.82 -0.34 7.16 15 19 H 0.09 1.66 8.14 -51.91 -0.42 1.24 15 20 H 0.09 1.69 7.64 -51.92 -0.40 1.29 15 21 H 0.08 0.98 8.14 -51.93 -0.42 0.55 15 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.12 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.10 0.67 8.14 -51.93 -0.42 0.25 15 25 H 0.10 0.93 8.14 -51.93 -0.42 0.51 15 26 H 0.12 1.29 7.13 -51.93 -0.37 0.92 15 LS Contribution 255.70 15.07 3.85 3.85 Total: -1.00 -33.27 255.70 -7.50 -40.77 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: -2.85 Total: -3.23 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 0.99 Total: -2.36 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.17 Total: -34.58 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -4.73 Total: -9.33 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -33.27 -7.50 -40.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388403408.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.642 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds