Wall clock time and date at job start Mon Mar 30 2020 03:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99649 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99944 * 3 2 1 7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.45504 * 122.42673 * 179.97438 * 13 11 10 15 15 C 1.54556 * 113.16118 * 181.07863 * 14 13 11 16 16 S 1.84210 * 101.32706 * 23.09440 * 15 14 13 17 17 C 1.47600 * 122.43306 * 359.70708 * 13 11 10 18 18 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 19 19 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 20 20 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 21 21 H 1.09001 * 108.75427 * 302.04464 * 14 13 11 22 22 H 1.09004 * 108.74967 * 60.26701 * 14 13 11 23 23 H 1.09003 * 111.05366 * 141.10875 * 15 14 13 24 24 H 1.09002 * 111.05202 * 265.04010 * 15 14 13 25 25 H 1.09004 * 110.77994 * 273.48066 * 17 13 11 26 26 H 1.09001 * 110.77570 * 36.90273 * 17 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 2.3919 -7.7263 0.0003 15 6 3.5534 -8.7455 0.0276 16 16 4.9080 -7.7309 0.7549 17 6 4.3088 -6.1624 -0.0050 18 1 -0.4850 0.8401 -0.0004 19 1 3.1243 -3.7315 -0.8895 20 1 3.1244 -3.7315 0.8905 21 1 1.7622 -7.8891 0.8750 22 1 1.7968 -7.9003 -0.8962 23 1 3.3139 -9.5951 0.6670 24 1 3.8082 -9.0758 -0.9795 25 1 4.6818 -6.0567 -1.0238 26 1 4.5947 -5.3043 0.6034 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388403408.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:22 Heat of formation + Delta-G solvation = -50.887939 kcal Electronic energy + Delta-G solvation = -12020.813643 eV Core-core repulsion = 9737.276698 eV Total energy + Delta-G solvation = -2283.536945 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 233.028 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.96240 -37.36602 -34.59297 -32.84477 -30.18880 -28.26597 -27.67313 -24.09345 -20.94189 -19.70453 -18.62969 -17.69251 -17.48833 -16.88321 -16.39201 -15.84680 -15.48447 -14.82361 -14.65626 -14.35466 -13.95079 -13.62878 -13.18678 -13.13508 -12.93867 -12.85869 -12.63154 -11.76998 -11.58802 -11.13436 -10.96223 -10.31250 -9.96458 -8.95726 -8.69551 -8.35407 -6.14361 0.55163 0.98913 1.17876 1.42178 1.43878 1.45219 1.53733 1.88670 2.26229 2.99012 3.09693 3.37524 3.71192 3.88097 3.99614 4.22441 4.25467 4.43550 4.48040 4.59307 4.70092 5.16723 5.41144 5.91724 6.18958 6.93110 7.05906 8.73560 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.053951 B = 0.005690 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.861574 B = 4919.619226 C = 5380.777126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.085 0.915 9 S -0.147 6.147 10 C -0.125 4.125 11 C 0.547 3.453 12 O -0.554 6.554 13 N -0.615 5.615 14 C 0.095 3.905 15 C -0.049 4.049 16 S -0.300 6.300 17 C 0.154 3.846 18 H 0.272 0.728 19 H 0.114 0.886 20 H 0.109 0.891 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.144 0.856 24 H 0.125 0.875 25 H 0.121 0.879 26 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.663 -14.844 -1.063 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.695 4.695 8 H 0.103 0.897 9 S 0.080 5.920 10 C -0.277 4.277 11 C 0.334 3.666 12 O -0.431 6.431 13 N -0.352 5.352 14 C -0.029 4.029 15 C -0.197 4.197 16 S -0.074 6.074 17 C -0.079 4.079 18 H 0.080 0.920 19 H 0.132 0.868 20 H 0.128 0.872 21 H 0.089 0.911 22 H 0.101 0.899 23 H 0.162 0.838 24 H 0.143 0.857 25 H 0.138 0.862 26 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.696 -15.331 -0.325 18.696 hybrid contribution 0.512 1.505 -0.613 1.704 sum 11.208 -13.826 -0.937 17.823 Atomic orbital electron populations 1.70174 1.07982 1.28730 1.47842 1.26126 0.95957 1.03311 0.93657 0.85005 0.77810 0.75664 0.79540 1.18556 1.20455 1.18672 1.23171 0.95413 0.91837 1.59122 0.89724 1.85592 1.10176 0.99204 1.97063 1.23375 1.03800 0.93664 1.06814 1.19952 0.85520 0.86112 0.75021 1.90707 1.16830 1.85707 1.49832 1.48497 1.06189 1.05880 1.74629 1.21702 0.97432 0.79741 1.03995 1.24640 0.90160 0.98648 1.06284 1.88532 1.41664 1.07452 1.69761 1.24534 0.79905 0.98501 1.04948 0.91951 0.86832 0.87243 0.91082 0.89908 0.83814 0.85677 0.86151 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.56 13.22 21.65 0.29 -55.27 15 2 C 0.01 0.81 5.49 84.86 0.47 1.28 15 3 Si 1.00 43.06 29.55 68.60 2.03 45.09 15 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 15 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 15 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 15 7 C -0.55 -30.86 9.50 67.96 0.65 -30.21 15 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 15 9 S -0.15 -8.10 20.57 -56.49 -1.16 -9.26 15 10 C -0.13 -4.90 4.94 71.24 0.35 -4.54 15 11 C 0.55 20.26 7.77 87.66 0.68 20.94 15 12 O -0.55 -25.47 16.00 -3.04 -0.05 -25.51 15 13 N -0.61 -16.34 3.23 -826.96 -2.67 -19.00 15 14 C 0.10 2.00 6.11 87.10 0.53 2.53 15 15 C -0.05 -0.65 7.59 72.51 0.55 -0.10 15 16 S -0.30 -5.64 23.44 -56.49 -1.32 -6.96 15 17 C 0.15 3.07 7.23 127.56 0.92 3.99 15 18 H 0.27 15.40 8.31 -92.70 -0.77 14.63 15 19 H 0.11 3.92 8.14 -2.39 -0.02 3.90 15 20 H 0.11 3.88 7.64 -2.40 -0.02 3.86 15 21 H 0.07 1.65 8.14 -2.39 -0.02 1.63 15 22 H 0.08 1.73 8.14 -2.38 -0.02 1.71 15 23 H 0.14 1.28 8.14 -2.39 -0.02 1.26 15 24 H 0.12 1.12 8.14 -2.39 -0.02 1.10 15 25 H 0.12 1.90 8.14 -2.39 -0.02 1.88 15 26 H 0.12 2.34 7.13 -2.39 -0.02 2.32 15 Total: -1.00 -73.85 255.70 2.43 -71.42 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: 1.18 Total: 5.62 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 4.15 Total: -6.11 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -2.38 Total: -74.28 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.05 Total: -25.51 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: -13.74 SS G_CDS: -2.49 Total: -16.23 kcal Total: -73.85 2.43 -71.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388403408.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.529 kcal (2) G-P(sol) polarization free energy of solvation -73.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds