Wall clock time and date at job start Mon Mar 30 2020 03:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46816 * 2 1 4 4 N 1.46497 * 109.47066 * 119.99773 * 2 1 3 5 5 C 1.32204 * 120.00175 * 246.18475 * 4 2 1 6 6 C 1.46915 * 120.83428 * 6.24589 * 5 4 2 7 7 C 1.34376 * 119.36767 * 179.97438 * 6 5 4 8 8 N 1.36424 * 121.22621 * 0.02562 * 7 6 5 9 9 H 0.96995 * 119.09377 * 180.02562 * 8 7 6 10 10 C 1.37774 * 121.81551 * 359.97128 * 8 7 6 11 11 C 1.40184 * 119.74176 * 180.02562 * 10 8 7 12 12 H 1.07998 * 119.99753 * 205.71167 * 11 10 8 13 13 C 1.40359 * 119.99875 * 25.71054 * 11 10 8 14 14 N 1.30585 * 119.99774 * 12.66182 * 13 11 10 15 15 Si 1.86796 * 119.99769 * 192.66351 * 13 11 10 16 16 H 1.48498 * 109.47069 * 90.00051 * 15 13 11 17 17 H 1.48500 * 109.46948 * 209.99675 * 15 13 11 18 18 H 1.48498 * 109.47093 * 330.00226 * 15 13 11 19 19 C 1.39061 * 120.51384 * 0.02562 * 10 8 7 20 20 C 1.52999 * 109.47264 * 240.00265 * 2 1 3 21 21 C 1.52998 * 117.49625 * 248.62326 * 20 2 1 22 22 C 1.52994 * 59.99992 * 252.50934 * 21 20 2 23 23 H 1.08997 * 109.47313 * 60.00078 * 1 2 3 24 24 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47677 * 299.99493 * 1 2 3 26 26 H 1.07998 * 120.31585 * 359.97438 * 6 5 4 27 27 H 1.08000 * 119.38656 * 180.02562 * 7 6 5 28 28 H 0.97006 * 119.99264 * 179.97438 * 14 13 11 29 29 H 1.08004 * 120.62305 * 179.74148 * 19 10 8 30 30 H 1.09002 * 115.54888 * 34.32504 * 20 2 1 31 31 H 1.09003 * 117.50137 * 359.97438 * 21 20 2 32 32 H 1.08998 * 117.50166 * 145.02273 * 21 20 2 33 33 H 1.09000 * 117.50311 * 252.51504 * 22 21 20 34 34 H 1.09000 * 117.52045 * 107.48039 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.6745 -0.0180 2.1262 6 6 2.8066 1.4430 2.0468 7 6 3.4795 2.0971 3.0086 8 7 4.0425 1.4295 4.0568 9 1 4.5211 1.9327 4.7340 10 6 3.9490 0.0606 4.1805 11 6 4.5437 -0.5810 5.2759 12 1 4.8463 -1.6147 5.1972 13 6 4.7458 0.1202 6.4749 14 7 4.1674 1.2762 6.6607 15 14 5.8422 -0.6002 7.8047 16 1 7.2402 -0.1462 7.5933 17 1 5.3697 -0.1440 9.1366 18 1 5.7882 -2.0828 7.7413 19 6 3.2694 -0.6898 3.2271 20 6 2.0400 -0.7212 -1.2493 21 6 2.7419 -2.0662 -1.0514 22 6 3.5550 -0.8281 -1.4342 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 2.3671 1.9862 1.2233 27 1 3.5765 3.1712 2.9508 28 1 4.3069 1.7605 7.4895 29 1 3.1985 -1.7635 3.3202 30 1 1.4310 -0.5979 -2.1448 31 1 2.8407 -2.4371 -0.0311 32 1 2.5948 -2.8281 -1.8168 33 1 3.9427 -0.7753 -2.4516 34 1 4.1883 -0.3841 -0.6662 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389729619.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:10 Heat of formation + Delta-G solvation = 55.586662 kcal Electronic energy + Delta-G solvation = -15792.041834 eV Core-core repulsion = 13304.310003 eV Total energy + Delta-G solvation = -2487.731831 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.60443 -37.24597 -34.37351 -33.27450 -30.87887 -30.37652 -27.58573 -25.92734 -23.08876 -21.77172 -21.49993 -20.87289 -18.73171 -17.88482 -16.58856 -15.38605 -15.25389 -14.87613 -14.38172 -13.79176 -13.60557 -12.92826 -12.70333 -11.99203 -11.95320 -11.88749 -11.54318 -11.44527 -11.07073 -10.96183 -10.73823 -10.61464 -10.35639 -10.04887 -9.75530 -9.67217 -9.45209 -9.12034 -8.20030 -7.41418 -7.24399 -5.93887 -4.77132 2.61128 2.76687 2.89436 2.94261 3.17431 3.66514 4.29378 4.50284 4.66506 5.32276 5.40974 5.58240 5.64185 5.67802 5.87164 6.04579 6.11654 6.21618 6.31188 6.36344 6.52285 6.66000 6.71525 6.77304 6.82549 6.83612 6.94981 7.01786 7.14275 7.42622 7.71665 7.78406 7.99401 8.29519 8.32627 8.82424 8.94758 9.74981 9.78791 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.040622 B = 0.006050 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.113501 B = 4626.987462 C = 4905.725862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.109 3.891 3 H 0.035 0.965 4 N -0.657 5.657 5 C 0.283 3.717 6 C -0.302 4.302 7 C 0.124 3.876 8 N -0.600 5.600 9 H 0.414 0.586 10 C 0.331 3.669 11 C -0.468 4.468 12 H 0.102 0.898 13 C 0.076 3.924 14 N -0.820 5.820 15 Si 0.926 3.074 16 H -0.265 1.265 17 H -0.275 1.275 18 H -0.257 1.257 19 C -0.355 4.355 20 C -0.141 4.141 21 C -0.160 4.160 22 C -0.186 4.186 23 H 0.038 0.962 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.116 0.884 27 H 0.129 0.871 28 H 0.291 0.709 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.388 2.495 -3.520 4.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.003 4.003 3 H 0.052 0.948 4 N -0.383 5.383 5 C 0.120 3.880 6 C -0.332 4.332 7 C -0.005 4.005 8 N -0.211 5.211 9 H 0.254 0.746 10 C 0.222 3.778 11 C -0.502 4.502 12 H 0.120 0.880 13 C -0.142 4.142 14 N -0.449 5.449 15 Si 0.749 3.251 16 H -0.190 1.190 17 H -0.200 1.200 18 H -0.180 1.180 19 C -0.384 4.384 20 C -0.160 4.160 21 C -0.197 4.197 22 C -0.223 4.223 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.134 0.866 27 H 0.147 0.853 28 H 0.103 0.897 29 H 0.130 0.870 30 H 0.105 0.895 31 H 0.134 0.866 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.971 1.821 -3.697 4.234 hybrid contribution 0.566 1.107 0.722 1.438 sum 1.537 2.928 -2.975 4.448 Atomic orbital electron populations 1.21769 0.96795 1.01042 0.99430 1.20715 0.93293 0.94666 0.91654 0.94751 1.73324 1.27852 1.32619 1.04554 1.20243 0.87941 0.87705 0.92097 1.22313 1.11640 0.97023 1.02230 1.21248 0.94417 0.96174 0.88697 1.42103 1.48764 1.07577 1.22658 0.74619 1.17652 0.87772 0.80053 0.92283 1.19517 1.36115 1.00031 0.94490 0.88015 1.26170 0.93574 0.94377 1.00036 1.69292 1.34208 1.13734 1.27638 0.85988 0.79826 0.80831 0.78410 1.19013 1.20031 1.18047 1.20231 1.18294 0.98237 1.01639 1.22367 0.93537 1.01424 0.98626 1.22825 1.03504 0.90246 1.03160 1.22772 0.94471 1.04367 1.00711 0.94339 0.92905 0.93732 0.86634 0.85321 0.89741 0.86967 0.89506 0.86639 0.90970 0.90468 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.50 37.16 0.35 -2.08 16 2 C 0.11 2.21 3.15 -67.93 -0.21 2.00 16 3 H 0.03 0.71 5.33 -51.93 -0.28 0.44 16 4 N -0.66 -15.56 8.43 -50.79 -0.43 -15.98 16 5 C 0.28 6.91 6.80 -82.74 -0.56 6.34 16 6 C -0.30 -6.51 9.34 -37.43 -0.35 -6.86 16 7 C 0.12 2.47 11.15 -16.87 -0.19 2.28 16 8 N -0.60 -13.14 4.86 -10.83 -0.05 -13.20 16 9 H 0.41 8.67 6.40 -40.82 -0.26 8.41 16 10 C 0.33 8.10 6.34 -84.16 -0.53 7.56 16 11 C -0.47 -11.12 9.04 -38.05 -0.34 -11.47 16 12 H 0.10 2.36 7.88 -52.49 -0.41 1.95 16 13 C 0.08 1.65 5.24 -17.28 -0.09 1.56 16 14 N -0.82 -18.05 11.07 55.57 0.61 -17.44 16 15 Si 0.93 16.54 29.58 -169.99 -5.03 11.51 16 16 H -0.27 -4.65 7.11 56.52 0.40 -4.25 16 17 H -0.28 -4.87 7.11 56.52 0.40 -4.47 16 18 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 19 C -0.36 -9.03 9.83 -37.82 -0.37 -9.40 16 20 C -0.14 -2.58 5.71 -90.62 -0.52 -3.10 16 21 C -0.16 -2.94 9.85 -26.74 -0.26 -3.20 16 22 C -0.19 -3.30 10.17 -26.74 -0.27 -3.58 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.12 2.30 6.00 -52.49 -0.31 1.99 16 27 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 28 H 0.29 5.80 8.29 -40.82 -0.34 5.46 16 29 H 0.11 2.92 8.06 -52.48 -0.42 2.50 16 30 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 31 H 0.12 2.45 6.95 -51.93 -0.36 2.09 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 285.30 15.07 4.30 4.30 Total: -1.00 -25.82 285.30 -8.51 -34.34 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -4.56 Total: 16.41 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -3.35 Total: -19.94 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.13 Total: -46.62 kcal Atomic # 14 Polarization: 16.54 SS G_CDS: -5.03 Total: 11.51 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -25.82 -8.51 -34.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389729619.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.923 kcal (2) G-P(sol) polarization free energy of solvation -25.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds