Wall clock time and date at job start Mon Mar 30 2020 03:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46816 * 2 1 4 4 N 1.46497 * 109.47066 * 119.99773 * 2 1 3 5 5 C 1.32204 * 120.00175 * 246.18475 * 4 2 1 6 6 C 1.46915 * 120.83428 * 6.24589 * 5 4 2 7 7 C 1.34376 * 119.36767 * 179.97438 * 6 5 4 8 8 N 1.36424 * 121.22621 * 0.02562 * 7 6 5 9 9 H 0.96995 * 119.09377 * 180.02562 * 8 7 6 10 10 C 1.37774 * 121.81551 * 359.97128 * 8 7 6 11 11 C 1.40184 * 119.74176 * 180.02562 * 10 8 7 12 12 H 1.07998 * 119.99753 * 205.71167 * 11 10 8 13 13 C 1.40359 * 119.99875 * 25.71054 * 11 10 8 14 14 N 1.30585 * 119.99774 * 12.66182 * 13 11 10 15 15 Si 1.86796 * 119.99769 * 192.66351 * 13 11 10 16 16 H 1.48498 * 109.47069 * 90.00051 * 15 13 11 17 17 H 1.48500 * 109.46948 * 209.99675 * 15 13 11 18 18 H 1.48498 * 109.47093 * 330.00226 * 15 13 11 19 19 C 1.39061 * 120.51384 * 0.02562 * 10 8 7 20 20 C 1.52999 * 109.47264 * 240.00265 * 2 1 3 21 21 C 1.52998 * 117.49625 * 248.62326 * 20 2 1 22 22 C 1.52994 * 59.99992 * 252.50934 * 21 20 2 23 23 H 1.08997 * 109.47313 * 60.00078 * 1 2 3 24 24 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47677 * 299.99493 * 1 2 3 26 26 H 1.07998 * 120.31585 * 359.97438 * 6 5 4 27 27 H 1.08000 * 119.38656 * 180.02562 * 7 6 5 28 28 H 0.97006 * 119.99264 * 179.97438 * 14 13 11 29 29 H 1.08004 * 120.62305 * 179.74148 * 19 10 8 30 30 H 1.09002 * 115.54888 * 34.32504 * 20 2 1 31 31 H 1.09003 * 117.50137 * 359.97438 * 21 20 2 32 32 H 1.08998 * 117.50166 * 145.02273 * 21 20 2 33 33 H 1.09000 * 117.50311 * 252.51504 * 22 21 20 34 34 H 1.09000 * 117.52045 * 107.48039 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.6745 -0.0180 2.1262 6 6 2.8066 1.4430 2.0468 7 6 3.4795 2.0971 3.0086 8 7 4.0425 1.4295 4.0568 9 1 4.5211 1.9327 4.7340 10 6 3.9490 0.0606 4.1805 11 6 4.5437 -0.5810 5.2759 12 1 4.8463 -1.6147 5.1972 13 6 4.7458 0.1202 6.4749 14 7 4.1674 1.2762 6.6607 15 14 5.8422 -0.6002 7.8047 16 1 7.2402 -0.1462 7.5933 17 1 5.3697 -0.1440 9.1366 18 1 5.7882 -2.0828 7.7413 19 6 3.2694 -0.6898 3.2271 20 6 2.0400 -0.7212 -1.2493 21 6 2.7419 -2.0662 -1.0514 22 6 3.5550 -0.8281 -1.4342 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 2.3671 1.9862 1.2233 27 1 3.5765 3.1712 2.9508 28 1 4.3069 1.7605 7.4895 29 1 3.1985 -1.7635 3.3202 30 1 1.4310 -0.5979 -2.1448 31 1 2.8407 -2.4371 -0.0311 32 1 2.5948 -2.8281 -1.8168 33 1 3.9427 -0.7753 -2.4516 34 1 4.1883 -0.3841 -0.6662 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389729619.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:10 Heat of formation + Delta-G solvation = 41.822782 kcal Electronic energy + Delta-G solvation = -15792.638681 eV Core-core repulsion = 13304.310003 eV Total energy + Delta-G solvation = -2488.328678 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.32741 -38.78006 -36.07358 -34.95956 -32.57738 -32.04786 -29.29445 -27.70310 -24.63686 -23.34369 -23.10294 -22.52727 -20.35121 -19.61106 -18.34616 -17.01816 -16.79093 -16.54823 -15.94791 -15.40793 -15.18185 -14.56999 -14.37795 -13.60122 -13.52793 -13.37454 -13.13770 -12.99762 -12.77163 -12.49523 -12.33938 -12.21668 -11.89867 -11.66550 -11.37026 -11.28997 -10.95738 -10.67726 -9.95789 -9.14651 -8.94030 -7.70062 -6.62945 0.96895 1.10796 1.42082 1.55170 1.61632 2.16609 2.57401 2.95511 3.05046 3.51627 3.96117 4.06730 4.16321 4.23705 4.38752 4.51336 4.58376 4.75414 4.81729 4.85987 4.96210 5.04694 5.05847 5.12367 5.18139 5.28618 5.36165 5.50134 5.60002 5.68159 5.88858 6.01290 6.12733 6.51536 6.54430 7.02699 7.21656 8.02909 8.07564 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.040622 B = 0.006050 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.113501 B = 4626.987462 C = 4905.725862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.098 3.902 3 H 0.032 0.968 4 N -0.680 5.680 5 C 0.263 3.737 6 C -0.319 4.319 7 C 0.135 3.865 8 N -0.601 5.601 9 H 0.418 0.582 10 C 0.321 3.679 11 C -0.498 4.498 12 H 0.093 0.907 13 C 0.049 3.951 14 N -0.830 5.830 15 Si 0.997 3.003 16 H -0.254 1.254 17 H -0.265 1.265 18 H -0.264 1.264 19 C -0.398 4.398 20 C -0.142 4.142 21 C -0.167 4.167 22 C -0.178 4.178 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.030 0.970 26 H 0.132 0.868 27 H 0.181 0.819 28 H 0.305 0.695 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 3.967 -3.755 5.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.013 4.013 3 H 0.050 0.950 4 N -0.406 5.406 5 C 0.099 3.901 6 C -0.349 4.349 7 C 0.006 3.994 8 N -0.212 5.212 9 H 0.259 0.741 10 C 0.211 3.789 11 C -0.530 4.530 12 H 0.111 0.889 13 C -0.168 4.168 14 N -0.458 5.458 15 Si 0.817 3.183 16 H -0.178 1.178 17 H -0.189 1.189 18 H -0.188 1.188 19 C -0.427 4.427 20 C -0.160 4.160 21 C -0.204 4.204 22 C -0.215 4.215 23 H 0.091 0.909 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.150 0.850 27 H 0.198 0.802 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.136 0.864 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.369 3.313 -3.953 5.336 hybrid contribution 0.409 0.659 0.829 1.136 sum 1.778 3.972 -3.123 5.357 Atomic orbital electron populations 1.21700 0.95284 1.00866 1.00436 1.20913 0.94553 0.94584 0.91291 0.95002 1.73256 1.27491 1.34280 1.05529 1.20392 0.88293 0.89452 0.91940 1.22384 1.13124 0.95666 1.03706 1.21910 0.92223 0.98313 0.86973 1.42102 1.49058 1.06650 1.23403 0.74106 1.17763 0.87455 0.81419 0.92227 1.19708 1.37326 1.00267 0.95709 0.88869 1.26898 0.94093 0.94562 1.01277 1.69279 1.33614 1.14112 1.28776 0.84948 0.78242 0.79469 0.75687 1.17813 1.18927 1.18830 1.20161 1.21339 0.97275 1.03914 1.22451 0.94174 1.00744 0.98628 1.22749 1.04426 0.91209 1.02013 1.22759 0.93900 1.03292 1.01526 0.90939 0.93635 0.95063 0.85012 0.80163 0.88353 0.89780 0.86447 0.90422 0.88099 0.87135 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 9.50 71.98 0.68 -3.79 16 2 C 0.10 3.97 3.15 44.99 0.14 4.11 16 3 H 0.03 1.30 5.33 -2.38 -0.01 1.29 16 4 N -0.68 -33.41 8.43 -314.61 -2.65 -36.07 16 5 C 0.26 13.38 6.80 42.30 0.29 13.67 16 6 C -0.32 -13.76 9.34 23.66 0.22 -13.54 16 7 C 0.13 5.19 11.15 83.10 0.93 6.12 16 8 N -0.60 -26.24 4.86 -188.18 -0.91 -27.16 16 9 H 0.42 17.16 6.40 -92.71 -0.59 16.57 16 10 C 0.32 16.26 6.34 38.88 0.25 16.51 16 11 C -0.50 -24.36 9.04 23.26 0.21 -24.15 16 12 H 0.09 4.56 7.88 -2.91 -0.02 4.54 16 13 C 0.05 2.09 5.24 85.39 0.45 2.54 16 14 N -0.83 -35.54 11.07 21.90 0.24 -35.30 16 15 Si 1.00 32.94 29.58 68.60 2.03 34.97 16 16 H -0.25 -7.95 7.11 99.48 0.71 -7.24 16 17 H -0.26 -8.30 7.11 99.48 0.71 -7.60 16 18 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 19 C -0.40 -21.57 9.83 23.41 0.23 -21.34 16 20 C -0.14 -4.97 5.71 -10.80 -0.06 -5.03 16 21 C -0.17 -6.07 9.85 30.59 0.30 -5.76 16 22 C -0.18 -6.13 10.17 30.59 0.31 -5.82 16 23 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.13 5.14 6.00 -2.91 -0.02 5.12 16 27 H 0.18 4.96 8.06 -2.91 -0.02 4.94 16 28 H 0.30 11.50 8.29 -92.70 -0.77 10.74 16 29 H 0.08 4.83 8.06 -2.91 -0.02 4.80 16 30 H 0.12 3.42 8.11 -2.39 -0.02 3.40 16 31 H 0.08 3.45 6.95 -2.39 -0.02 3.43 16 32 H 0.10 3.04 8.14 -2.39 -0.02 3.03 16 33 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -58.23 285.30 3.16 -55.07 By element: Atomic # 1 Polarization: 44.47 SS G_CDS: 0.51 Total: 44.97 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 3.95 Total: -36.49 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -3.32 Total: -98.52 kcal Atomic # 14 Polarization: 32.94 SS G_CDS: 2.03 Total: 34.97 kcal Total: -58.23 3.16 -55.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389729619.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.897 kcal (2) G-P(sol) polarization free energy of solvation -58.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds