Wall clock time and date at job start Mon Mar 30 2020 03:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47599 * 2 1 4 4 N 1.46505 * 109.47027 * 239.99951 * 2 1 3 5 5 C 1.32201 * 119.99984 * 126.26940 * 4 2 1 6 6 C 1.46924 * 120.83129 * 5.58205 * 5 4 2 7 7 C 1.34377 * 119.36630 * 180.02562 * 6 5 4 8 8 N 1.36429 * 121.22243 * 359.97438 * 7 6 5 9 9 H 0.97000 * 119.08843 * 180.02562 * 8 7 6 10 10 C 1.37770 * 121.82214 * 0.02562 * 8 7 6 11 11 C 1.40174 * 119.74685 * 180.27278 * 10 8 7 12 12 H 1.07995 * 119.99845 * 209.28759 * 11 10 8 13 13 C 1.40354 * 119.99721 * 29.29057 * 11 10 8 14 14 N 1.30582 * 120.00275 * 11.35292 * 13 11 10 15 15 Si 1.86797 * 119.99976 * 191.35528 * 13 11 10 16 16 H 1.48501 * 109.47083 * 89.99616 * 15 13 11 17 17 H 1.48499 * 109.47356 * 209.99640 * 15 13 11 18 18 H 1.48504 * 109.47181 * 329.99929 * 15 13 11 19 19 C 1.39066 * 120.50789 * 359.97438 * 10 8 7 20 20 C 1.53000 * 109.46948 * 120.00185 * 2 1 3 21 21 C 1.53001 * 117.50134 * 248.61825 * 20 2 1 22 22 C 1.53001 * 117.50011 * 179.97438 * 20 2 1 23 23 H 1.08999 * 109.47599 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46790 * 300.00237 * 1 2 3 25 25 H 1.09004 * 109.47302 * 59.99343 * 1 2 3 26 26 H 1.07995 * 120.31934 * 0.04161 * 6 5 4 27 27 H 1.08002 * 119.38945 * 180.02562 * 7 6 5 28 28 H 0.97001 * 120.00136 * 180.02562 * 14 13 11 29 29 H 1.07999 * 120.62609 * 179.97438 * 19 10 8 30 30 H 1.09000 * 115.54980 * 34.33189 * 20 2 1 31 31 H 1.08992 * 117.49480 * 0.02562 * 21 20 2 32 32 H 1.09000 * 117.49584 * 145.01938 * 21 20 2 33 33 H 1.09000 * 117.50070 * 214.98031 * 22 20 2 34 34 H 1.08998 * 117.49398 * 0.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.8772 -0.0900 -2.0019 6 6 3.4474 1.2186 -1.6540 7 6 4.3175 1.8029 -2.4950 8 7 4.6814 1.2033 -3.6652 9 1 5.3123 1.6526 -4.2491 10 6 4.1776 -0.0229 -4.0404 11 6 4.5859 -0.6019 -5.2499 12 1 3.9184 -1.2605 -5.7857 13 6 5.8621 -0.3258 -5.7646 14 7 6.7476 0.2832 -5.0228 15 14 6.2941 -0.8294 -7.5108 16 1 5.9513 0.2743 -8.4433 17 1 7.7483 -1.1171 -7.5976 18 1 5.5259 -2.0456 -7.8796 19 6 3.2719 -0.6934 -3.2255 20 6 2.0399 -0.7213 1.2492 21 6 2.7419 0.1225 2.3152 22 6 3.5549 -0.8287 1.4340 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 3.1701 1.7062 -0.7312 27 1 4.7372 2.7647 -2.2394 28 1 7.6295 0.4744 -5.3786 29 1 2.8755 -1.6545 -3.5180 30 1 1.4310 -1.5586 1.5901 31 1 2.8400 1.1915 2.1266 32 1 2.5946 -0.1595 3.3577 33 1 3.9424 -1.7362 1.8971 34 1 4.1883 -0.3851 0.6658 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389729620.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:12 Heat of formation + Delta-G solvation = 52.628790 kcal Electronic energy + Delta-G solvation = -15768.371700 eV Core-core repulsion = 13280.511606 eV Total energy + Delta-G solvation = -2487.860094 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.61467 -37.32674 -34.37911 -33.35234 -30.87905 -30.43576 -27.55503 -25.93875 -23.04500 -21.85390 -21.61275 -20.73155 -18.98485 -17.99604 -16.58526 -15.53601 -15.18384 -14.69208 -14.47086 -13.96248 -13.59975 -12.93091 -12.78302 -12.12621 -11.90677 -11.78937 -11.53728 -11.43727 -11.10778 -11.06506 -10.84226 -10.62919 -10.38205 -10.07461 -9.84879 -9.70413 -9.50548 -9.27523 -8.16946 -7.42350 -7.20300 -5.92394 -4.76076 2.63428 2.76065 2.91232 2.95940 3.18079 3.69137 4.28071 4.37607 4.66572 5.17925 5.35030 5.43877 5.53280 5.61314 5.84247 5.97730 6.04556 6.09915 6.28998 6.34359 6.41137 6.56794 6.66678 6.69164 6.75555 6.80725 6.85963 6.90192 7.05182 7.42882 7.73332 7.79164 8.00133 8.28863 8.34761 8.82190 8.93843 9.78000 9.80253 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.043576 B = 0.005880 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.407104 B = 4761.110189 C = 4918.489425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.109 3.891 3 H 0.033 0.967 4 N -0.655 5.655 5 C 0.283 3.717 6 C -0.302 4.302 7 C 0.125 3.875 8 N -0.599 5.599 9 H 0.412 0.588 10 C 0.333 3.667 11 C -0.473 4.473 12 H 0.101 0.899 13 C 0.077 3.923 14 N -0.821 5.821 15 Si 0.925 3.075 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.257 1.257 19 C -0.351 4.351 20 C -0.127 4.127 21 C -0.194 4.194 22 C -0.170 4.170 23 H 0.052 0.948 24 H 0.040 0.960 25 H 0.045 0.955 26 H 0.115 0.885 27 H 0.129 0.871 28 H 0.290 0.710 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.644 3.910 2.950 4.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.003 4.003 3 H 0.051 0.949 4 N -0.380 5.380 5 C 0.119 3.881 6 C -0.332 4.332 7 C -0.005 4.005 8 N -0.209 5.209 9 H 0.251 0.749 10 C 0.224 3.776 11 C -0.506 4.506 12 H 0.119 0.881 13 C -0.141 4.141 14 N -0.449 5.449 15 Si 0.748 3.252 16 H -0.191 1.191 17 H -0.201 1.201 18 H -0.181 1.181 19 C -0.380 4.380 20 C -0.146 4.146 21 C -0.232 4.232 22 C -0.208 4.208 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.133 0.867 27 H 0.147 0.853 28 H 0.101 0.899 29 H 0.131 0.869 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.986 3.189 3.183 4.612 hybrid contribution 1.049 0.869 -0.495 1.449 sum 0.063 4.057 2.689 4.868 Atomic orbital electron populations 1.21678 0.96252 1.01073 0.99503 1.20867 0.93859 0.94605 0.90937 0.94897 1.73382 1.24514 1.31999 1.08154 1.20244 0.88391 0.87257 0.92163 1.22290 1.07576 1.01292 1.02061 1.21241 0.95635 0.96293 0.87296 1.42040 1.42389 1.17841 1.18593 0.74907 1.17645 0.87178 0.81573 0.91165 1.19470 0.99743 1.26586 1.04818 0.88085 1.26127 0.95442 0.92474 1.00043 1.69362 1.05729 1.33114 1.36740 0.86012 0.78313 0.80336 0.80505 1.19075 1.20074 1.18094 1.20275 1.16521 1.04033 0.97161 1.22449 0.94577 1.00774 0.96785 1.22990 1.07051 0.97324 0.95790 1.22753 0.95208 1.00550 1.02265 0.92933 0.94086 0.93618 0.86742 0.85330 0.89862 0.86898 0.88910 0.89613 0.89806 0.89885 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.50 37.16 0.35 -1.95 16 2 C 0.11 2.22 2.99 -67.93 -0.20 2.02 16 3 H 0.03 0.68 5.07 -51.93 -0.26 0.42 16 4 N -0.65 -15.85 10.10 -50.79 -0.51 -16.37 16 5 C 0.28 6.96 6.80 -82.74 -0.56 6.40 16 6 C -0.30 -6.49 9.35 -37.43 -0.35 -6.84 16 7 C 0.13 2.47 11.15 -16.87 -0.19 2.28 16 8 N -0.60 -13.09 4.83 -10.83 -0.05 -13.14 16 9 H 0.41 8.60 6.65 -40.82 -0.27 8.32 16 10 C 0.33 8.17 6.29 -84.16 -0.53 7.64 16 11 C -0.47 -11.29 9.03 -38.06 -0.34 -11.63 16 12 H 0.10 2.36 7.88 -52.49 -0.41 1.94 16 13 C 0.08 1.68 5.23 -17.29 -0.09 1.59 16 14 N -0.82 -18.27 11.23 55.57 0.62 -17.64 16 15 Si 0.92 16.68 29.58 -169.99 -5.03 11.65 16 16 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 17 H -0.28 -4.94 7.11 56.52 0.40 -4.54 16 18 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 19 C -0.35 -9.01 9.83 -37.82 -0.37 -9.38 16 20 C -0.13 -2.33 5.36 -90.62 -0.49 -2.82 16 21 C -0.19 -3.03 10.18 -26.71 -0.27 -3.31 16 22 C -0.17 -3.08 10.13 -26.71 -0.27 -3.35 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.11 2.28 5.98 -52.49 -0.31 1.96 16 27 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 28 H 0.29 5.86 8.29 -40.82 -0.34 5.52 16 29 H 0.11 2.98 8.06 -52.49 -0.42 2.55 16 30 H 0.09 1.65 8.11 -51.93 -0.42 1.23 16 31 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 LS Contribution 287.88 15.07 4.34 4.34 Total: -1.00 -26.37 287.88 -8.56 -34.93 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -4.62 Total: 15.57 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -3.31 Total: -19.35 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.06 Total: -47.15 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -5.03 Total: 11.65 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.37 -8.56 -34.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389729620.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.563 kcal (2) G-P(sol) polarization free energy of solvation -26.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds