Wall clock time and date at job start Mon Mar 30 2020 03:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47599 * 2 1 4 4 N 1.46505 * 109.47027 * 239.99951 * 2 1 3 5 5 C 1.32201 * 119.99984 * 126.26940 * 4 2 1 6 6 C 1.46924 * 120.83129 * 5.58205 * 5 4 2 7 7 C 1.34377 * 119.36630 * 180.02562 * 6 5 4 8 8 N 1.36429 * 121.22243 * 359.97438 * 7 6 5 9 9 H 0.97000 * 119.08843 * 180.02562 * 8 7 6 10 10 C 1.37770 * 121.82214 * 0.02562 * 8 7 6 11 11 C 1.40174 * 119.74685 * 180.27278 * 10 8 7 12 12 H 1.07995 * 119.99845 * 209.28759 * 11 10 8 13 13 C 1.40354 * 119.99721 * 29.29057 * 11 10 8 14 14 N 1.30582 * 120.00275 * 11.35292 * 13 11 10 15 15 Si 1.86797 * 119.99976 * 191.35528 * 13 11 10 16 16 H 1.48501 * 109.47083 * 89.99616 * 15 13 11 17 17 H 1.48499 * 109.47356 * 209.99640 * 15 13 11 18 18 H 1.48504 * 109.47181 * 329.99929 * 15 13 11 19 19 C 1.39066 * 120.50789 * 359.97438 * 10 8 7 20 20 C 1.53000 * 109.46948 * 120.00185 * 2 1 3 21 21 C 1.53001 * 117.50134 * 248.61825 * 20 2 1 22 22 C 1.53001 * 117.50011 * 179.97438 * 20 2 1 23 23 H 1.08999 * 109.47599 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46790 * 300.00237 * 1 2 3 25 25 H 1.09004 * 109.47302 * 59.99343 * 1 2 3 26 26 H 1.07995 * 120.31934 * 0.04161 * 6 5 4 27 27 H 1.08002 * 119.38945 * 180.02562 * 7 6 5 28 28 H 0.97001 * 120.00136 * 180.02562 * 14 13 11 29 29 H 1.07999 * 120.62609 * 179.97438 * 19 10 8 30 30 H 1.09000 * 115.54980 * 34.33189 * 20 2 1 31 31 H 1.08992 * 117.49480 * 0.02562 * 21 20 2 32 32 H 1.09000 * 117.49584 * 145.01938 * 21 20 2 33 33 H 1.09000 * 117.50070 * 214.98031 * 22 20 2 34 34 H 1.08998 * 117.49398 * 0.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.8772 -0.0900 -2.0019 6 6 3.4474 1.2186 -1.6540 7 6 4.3175 1.8029 -2.4950 8 7 4.6814 1.2033 -3.6652 9 1 5.3123 1.6526 -4.2491 10 6 4.1776 -0.0229 -4.0404 11 6 4.5859 -0.6019 -5.2499 12 1 3.9184 -1.2605 -5.7857 13 6 5.8621 -0.3258 -5.7646 14 7 6.7476 0.2832 -5.0228 15 14 6.2941 -0.8294 -7.5108 16 1 5.9513 0.2743 -8.4433 17 1 7.7483 -1.1171 -7.5976 18 1 5.5259 -2.0456 -7.8796 19 6 3.2719 -0.6934 -3.2255 20 6 2.0399 -0.7213 1.2492 21 6 2.7419 0.1225 2.3152 22 6 3.5549 -0.8287 1.4340 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 3.1701 1.7062 -0.7312 27 1 4.7372 2.7647 -2.2394 28 1 7.6295 0.4744 -5.3786 29 1 2.8755 -1.6545 -3.5180 30 1 1.4310 -1.5586 1.5901 31 1 2.8400 1.1915 2.1266 32 1 2.5946 -0.1595 3.3577 33 1 3.9424 -1.7362 1.8971 34 1 4.1883 -0.3851 0.6658 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389729620.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:12 Heat of formation + Delta-G solvation = 37.869428 kcal Electronic energy + Delta-G solvation = -15769.011714 eV Core-core repulsion = 13280.511606 eV Total energy + Delta-G solvation = -2488.500108 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.33457 -38.81344 -36.07354 -35.03719 -32.55378 -32.12227 -29.25905 -27.71976 -24.57474 -23.31381 -23.19775 -22.38108 -20.56966 -19.74410 -18.34780 -17.15584 -16.73531 -16.35631 -15.97927 -15.51901 -15.20695 -14.52873 -14.50262 -13.65888 -13.39805 -13.31733 -13.15451 -12.97302 -12.81128 -12.45408 -12.39579 -12.29431 -11.95282 -11.70487 -11.34335 -11.29200 -11.00946 -10.85614 -9.92980 -9.16699 -8.91069 -7.69418 -6.63050 0.98027 1.10554 1.42807 1.55546 1.61252 2.17738 2.57340 2.95018 2.98524 3.50189 3.81571 4.04608 4.11884 4.15539 4.34829 4.51714 4.61031 4.72310 4.75590 4.83889 4.96952 4.98802 5.07458 5.11633 5.17789 5.23561 5.26178 5.35486 5.53936 5.67816 5.88057 6.01591 6.13255 6.49769 6.56060 7.02111 7.20142 8.02552 8.10827 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.043576 B = 0.005880 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.407104 B = 4761.110189 C = 4918.489425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.103 3.897 3 H 0.032 0.968 4 N -0.686 5.686 5 C 0.265 3.735 6 C -0.317 4.317 7 C 0.136 3.864 8 N -0.599 5.599 9 H 0.417 0.583 10 C 0.324 3.676 11 C -0.502 4.502 12 H 0.093 0.907 13 C 0.049 3.951 14 N -0.832 5.832 15 Si 0.995 3.005 16 H -0.253 1.253 17 H -0.267 1.267 18 H -0.265 1.265 19 C -0.395 4.395 20 C -0.145 4.145 21 C -0.157 4.157 22 C -0.187 4.187 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.131 0.869 27 H 0.182 0.818 28 H 0.303 0.697 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.347 5.415 3.430 6.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.009 4.009 3 H 0.049 0.951 4 N -0.412 5.412 5 C 0.101 3.899 6 C -0.346 4.346 7 C 0.006 3.994 8 N -0.209 5.209 9 H 0.257 0.743 10 C 0.215 3.785 11 C -0.534 4.534 12 H 0.111 0.889 13 C -0.168 4.168 14 N -0.460 5.460 15 Si 0.816 3.184 16 H -0.178 1.178 17 H -0.191 1.191 18 H -0.189 1.189 19 C -0.425 4.425 20 C -0.164 4.164 21 C -0.194 4.194 22 C -0.224 4.224 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.053 0.947 26 H 0.149 0.851 27 H 0.199 0.801 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.132 0.868 33 H 0.111 0.889 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.000 4.711 3.694 5.987 hybrid contribution 0.779 0.383 -0.628 1.072 sum 0.779 5.095 3.066 5.997 Atomic orbital electron populations 1.21631 0.94763 1.01007 1.00484 1.21013 0.95058 0.94390 0.90393 0.95052 1.73265 1.24555 1.33676 1.09659 1.20370 0.88910 0.88796 0.91834 1.22334 1.08558 1.00390 1.03342 1.21909 0.94247 0.97520 0.85679 1.42030 1.42411 1.16997 1.19467 0.74337 1.17743 0.86955 0.82608 0.91212 1.19665 1.01013 1.27533 1.05230 0.88893 1.26852 0.94402 0.91938 1.03580 1.69355 1.06302 1.32174 1.38139 0.84966 0.78121 0.79864 0.75486 1.17759 1.19093 1.18881 1.20219 1.19120 1.03995 0.99124 1.22406 0.94642 1.02026 0.97322 1.23070 1.02862 0.97098 0.96365 1.22703 0.94701 1.02066 1.02952 0.93521 0.90914 0.94736 0.85131 0.80116 0.88532 0.89760 0.88559 0.88808 0.86759 0.88909 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.31 9.50 71.98 0.68 -3.63 16 2 C 0.10 4.17 2.99 44.99 0.13 4.30 16 3 H 0.03 1.27 5.07 -2.39 -0.01 1.26 16 4 N -0.69 -34.41 10.10 -314.60 -3.18 -37.59 16 5 C 0.27 13.55 6.80 42.30 0.29 13.84 16 6 C -0.32 -13.58 9.35 23.66 0.22 -13.35 16 7 C 0.14 5.18 11.15 83.10 0.93 6.10 16 8 N -0.60 -26.02 4.83 -188.19 -0.91 -26.92 16 9 H 0.42 16.98 6.65 -92.71 -0.62 16.36 16 10 C 0.32 16.44 6.29 38.88 0.24 16.68 16 11 C -0.50 -24.61 9.03 23.26 0.21 -24.39 16 12 H 0.09 4.56 7.88 -2.91 -0.02 4.53 16 13 C 0.05 2.13 5.23 85.39 0.45 2.57 16 14 N -0.83 -36.01 11.23 21.89 0.25 -35.77 16 15 Si 1.00 33.19 29.58 68.60 2.03 35.22 16 16 H -0.25 -7.96 7.11 99.48 0.71 -7.26 16 17 H -0.27 -8.48 7.11 99.48 0.71 -7.77 16 18 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 19 C -0.40 -21.57 9.83 23.41 0.23 -21.34 16 20 C -0.15 -5.18 5.36 -10.79 -0.06 -5.24 16 21 C -0.16 -4.46 10.18 30.61 0.31 -4.14 16 22 C -0.19 -6.64 10.13 30.61 0.31 -6.33 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.13 5.07 5.98 -2.91 -0.02 5.05 16 27 H 0.18 4.91 8.06 -2.91 -0.02 4.89 16 28 H 0.30 11.62 8.29 -92.71 -0.77 10.86 16 29 H 0.08 4.87 8.06 -2.91 -0.02 4.85 16 30 H 0.10 3.33 8.11 -2.39 -0.02 3.32 16 31 H 0.09 2.54 8.05 -2.39 -0.02 2.52 16 32 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 34 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -59.18 287.88 2.62 -56.56 By element: Atomic # 1 Polarization: 42.94 SS G_CDS: 0.48 Total: 43.42 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 3.95 Total: -34.93 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -3.84 Total: -100.28 kcal Atomic # 14 Polarization: 33.19 SS G_CDS: 2.03 Total: 35.22 kcal Total: -59.18 2.62 -56.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389729620.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.430 kcal (2) G-P(sol) polarization free energy of solvation -59.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds