Wall clock time and date at job start Mon Mar 30 2020 02:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.50699 * 119.99919 * 2 1 4 4 C 1.30995 * 119.99825 * 180.02562 * 2 1 3 5 5 C 1.50699 * 120.00256 * 359.97438 * 4 2 1 6 6 N 1.46505 * 109.47237 * 124.99961 * 5 4 2 7 7 C 1.32211 * 120.00000 * 113.91233 * 6 5 4 8 8 C 1.46919 * 120.83431 * 356.75166 * 7 6 5 9 9 C 1.34371 * 119.36713 * 180.02562 * 8 7 6 10 10 N 1.36420 * 121.22383 * 359.97438 * 9 8 7 11 11 H 0.96998 * 119.09303 * 179.97438 * 10 9 8 12 12 C 1.37775 * 121.82278 * 0.02562 * 10 9 8 13 13 C 1.40166 * 119.74592 * 180.27607 * 12 10 9 14 14 H 1.08007 * 119.99889 * 215.63703 * 13 12 10 15 15 C 1.40351 * 120.00047 * 35.63299 * 13 12 10 16 16 N 1.30582 * 120.00317 * 7.97103 * 15 13 12 17 17 Si 1.86802 * 119.99968 * 187.96642 * 15 13 12 18 18 H 1.48503 * 109.47225 * 60.00429 * 17 15 13 19 19 H 1.48498 * 109.47409 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47319 * 300.00415 * 17 15 13 21 21 C 1.39064 * 120.50831 * 359.97438 * 12 10 9 22 22 H 1.09005 * 109.46871 * 239.99837 * 1 2 3 23 23 H 1.08993 * 109.47249 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46810 * 120.00062 * 1 2 3 25 25 H 1.09008 * 109.46860 * 270.00377 * 3 2 1 26 26 H 1.08994 * 109.47227 * 30.00073 * 3 2 1 27 27 H 1.08998 * 109.47194 * 150.00126 * 3 2 1 28 28 H 1.07997 * 119.99900 * 179.97438 * 4 2 1 29 29 H 1.08996 * 109.47425 * 4.99954 * 5 4 2 30 30 H 1.08997 * 109.47547 * 244.99732 * 5 4 2 31 31 H 1.07998 * 120.31517 * 0.04196 * 8 7 6 32 32 H 1.08007 * 119.38303 * 180.02562 * 9 8 7 33 33 H 0.96997 * 120.00021 * 180.02562 * 16 15 13 34 34 H 1.07994 * 120.62770 * 179.97438 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4085 -2.4396 -0.0005 6 7 1.8500 -3.2584 -1.1323 7 6 2.4964 -4.3913 -0.9163 8 6 2.8441 -4.8116 0.4479 9 6 3.5018 -5.9685 0.6335 10 7 3.8522 -6.7599 -0.4210 11 1 4.3269 -7.5886 -0.2515 12 6 3.5513 -6.4141 -1.7203 13 6 3.9271 -7.2627 -2.7706 14 1 4.2407 -6.8455 -3.7162 15 6 3.8959 -8.6547 -2.5935 16 7 3.3720 -9.1637 -1.5111 17 14 4.6039 -9.7793 -3.9064 18 1 6.0448 -9.4739 -4.0953 19 1 4.4498 -11.1940 -3.4820 20 1 3.8804 -9.5640 -5.1853 21 6 2.8722 -5.2325 -1.9972 22 1 -0.3633 -0.5139 0.8900 23 1 -0.3633 1.0276 0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 2.4421 1.6198 -1.0278 26 1 1.6715 2.0647 0.5138 27 1 3.2130 1.1748 0.5138 28 1 3.2420 -1.1345 -0.0009 29 1 0.3403 -2.2424 -0.0896 30 1 1.6033 -2.9717 0.9306 31 1 2.5733 -4.1967 1.2935 32 1 3.7572 -6.2779 1.6363 33 1 3.3508 -10.1256 -1.3886 34 1 2.6358 -4.9594 -3.0149 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389977261.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:21 Heat of formation + Delta-G solvation = 23.473397 kcal Electronic energy + Delta-G solvation = -15239.370954 eV Core-core repulsion = 12750.246587 eV Total energy + Delta-G solvation = -2489.124367 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.31395 -37.97096 -36.11956 -35.06326 -32.39299 -31.29972 -28.98427 -28.54271 -27.59227 -24.71428 -23.23468 -21.83008 -19.73941 -18.73163 -18.35837 -17.17053 -16.68963 -16.23235 -15.64573 -15.41251 -15.07700 -14.67881 -14.56903 -14.40030 -13.54895 -13.28177 -13.07921 -12.98779 -12.84962 -12.70420 -12.64948 -12.48574 -12.22709 -12.04777 -11.77527 -11.28558 -11.08703 -9.92627 -9.90204 -9.08567 -8.87874 -7.72500 -6.67528 0.97842 1.03848 1.35026 1.43719 1.54490 1.60918 2.18885 2.56147 2.93574 3.43816 4.01698 4.10157 4.14849 4.37776 4.48752 4.60895 4.65635 4.69408 4.85186 4.89448 4.93946 4.97814 5.08100 5.10660 5.10862 5.16584 5.29957 5.64062 5.80233 5.82653 5.99296 6.05422 6.14637 6.42698 6.57182 6.97548 7.15497 7.91932 8.14865 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.054207 B = 0.004702 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.412742 B = 5954.004065 C = 6166.161465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.145 4.145 3 C -0.108 4.108 4 C -0.163 4.163 5 C 0.081 3.919 6 N -0.699 5.699 7 C 0.259 3.741 8 C -0.322 4.322 9 C 0.142 3.858 10 N -0.596 5.596 11 H 0.417 0.583 12 C 0.331 3.669 13 C -0.509 4.509 14 H 0.094 0.906 15 C 0.050 3.950 16 N -0.835 5.835 17 Si 0.995 3.005 18 H -0.255 1.255 19 H -0.264 1.264 20 H -0.267 1.267 21 C -0.388 4.388 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.135 0.865 32 H 0.187 0.813 33 H 0.302 0.698 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.650 3.684 5.577 6.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.146 4.146 3 C -0.165 4.165 4 C -0.182 4.182 5 C -0.049 4.049 6 N -0.424 5.424 7 C 0.096 3.904 8 C -0.351 4.351 9 C 0.012 3.988 10 N -0.204 5.204 11 H 0.255 0.745 12 C 0.222 3.778 13 C -0.542 4.542 14 H 0.112 0.888 15 C -0.167 4.167 16 N -0.463 5.463 17 Si 0.815 3.185 18 H -0.179 1.179 19 H -0.188 1.188 20 H -0.192 1.192 21 C -0.417 4.417 22 H 0.084 0.916 23 H 0.099 0.901 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.153 0.847 32 H 0.204 0.796 33 H 0.113 0.887 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.186 4.154 5.088 6.674 hybrid contribution 0.405 -1.046 0.223 1.144 sum 1.592 3.108 5.310 6.355 Atomic orbital electron populations 1.20775 0.91567 1.02800 1.01455 1.21883 0.96743 0.95115 1.00872 1.20818 0.99525 0.93955 1.02201 1.22703 0.98437 0.94520 1.02555 1.20988 0.97601 0.92841 0.93432 1.73373 1.30095 1.09603 1.29378 1.20544 0.88361 0.90234 0.91307 1.22365 1.13762 1.01298 0.97710 1.21948 0.93453 0.90446 0.92926 1.42057 1.50983 1.23114 1.04294 0.74479 1.17730 0.85938 0.90862 0.83305 1.19593 1.43615 0.91357 0.99677 0.88797 1.26795 0.91401 0.99453 0.99008 1.69420 1.32630 1.16497 1.27709 0.85029 0.79595 0.76236 0.77643 1.17882 1.18797 1.19186 1.20335 1.22735 1.02031 0.96573 0.91603 0.90075 0.93079 0.91561 0.89949 0.92131 0.89742 0.92347 0.94655 0.84697 0.79616 0.88711 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.98 8.53 71.24 0.61 -2.38 16 2 C -0.15 -4.53 6.05 -16.48 -0.10 -4.63 16 3 C -0.11 -2.60 9.97 71.24 0.71 -1.89 16 4 C -0.16 -6.27 9.44 25.65 0.24 -6.02 16 5 C 0.08 3.52 6.48 85.63 0.55 4.07 16 6 N -0.70 -36.70 10.60 -338.70 -3.59 -40.29 16 7 C 0.26 13.57 6.80 42.30 0.29 13.86 16 8 C -0.32 -13.96 9.37 23.66 0.22 -13.74 16 9 C 0.14 5.35 11.15 83.10 0.93 6.28 16 10 N -0.60 -25.65 4.79 -188.20 -0.90 -26.55 16 11 H 0.42 16.64 7.04 -92.71 -0.65 15.99 16 12 C 0.33 16.76 6.21 38.88 0.24 17.00 16 13 C -0.51 -24.94 9.01 23.25 0.21 -24.73 16 14 H 0.09 4.56 7.86 -2.91 -0.02 4.54 16 15 C 0.05 2.18 5.25 85.39 0.45 2.63 16 16 N -0.84 -36.47 11.48 21.89 0.25 -36.22 16 17 Si 0.99 33.40 29.57 68.60 2.03 35.42 16 18 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 19 H -0.26 -8.25 7.11 99.48 0.71 -7.55 16 20 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 21 C -0.39 -21.32 9.83 23.41 0.23 -21.09 16 22 H 0.07 1.71 7.85 -2.38 -0.02 1.70 16 23 H 0.08 1.71 7.94 -2.39 -0.02 1.70 16 24 H 0.05 1.57 7.66 -2.39 -0.02 1.55 16 25 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.08 1.55 8.05 -2.39 -0.02 1.53 16 27 H 0.06 1.41 8.06 -2.39 -0.02 1.39 16 28 H 0.08 3.37 8.04 -2.91 -0.02 3.34 16 29 H 0.06 2.44 5.79 -2.39 -0.01 2.42 16 30 H 0.04 1.49 5.26 -2.39 -0.01 1.47 16 31 H 0.14 5.27 5.92 -2.91 -0.02 5.25 16 32 H 0.19 4.89 8.06 -2.91 -0.02 4.86 16 33 H 0.30 11.77 8.29 -92.71 -0.77 11.01 16 34 H 0.09 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -61.41 287.88 2.82 -58.60 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: 0.45 Total: 39.68 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 4.58 Total: -30.65 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -4.24 Total: -103.06 kcal Atomic # 14 Polarization: 33.40 SS G_CDS: 2.03 Total: 35.42 kcal Total: -61.41 2.82 -58.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389977261.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.071 kcal (2) G-P(sol) polarization free energy of solvation -61.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds