Wall clock time and date at job start Mon Mar 30 2020 03:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00013 * 2 1 4 4 H 1.48493 * 109.47331 * 269.99964 * 3 2 1 5 5 H 1.48499 * 109.46996 * 30.00171 * 3 2 1 6 6 H 1.48500 * 109.47003 * 149.99503 * 3 2 1 7 7 C 1.37881 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99680 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99991 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.46962 * 180.02562 * 9 7 2 11 11 C 1.46907 * 110.99848 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47114 * 179.97438 * 11 10 9 13 13 N 1.31742 * 123.78921 * 270.16240 * 12 11 10 14 14 N 1.27565 * 118.29157 * 180.36958 * 13 12 11 15 15 S 1.56509 * 109.24690 * 359.70866 * 14 13 12 16 16 C 1.35494 * 123.78278 * 89.99580 * 12 11 10 17 17 Cl 1.73599 * 127.93315 * 359.96492 * 16 12 11 18 18 H 0.96993 * 119.99724 * 359.97438 * 1 2 3 19 19 H 1.08994 * 109.46893 * 60.00165 * 9 7 2 20 20 H 1.09006 * 109.47046 * 300.00547 * 9 7 2 21 21 H 1.00900 * 110.99756 * 303.94655 * 10 9 7 22 22 H 1.08994 * 109.47189 * 59.99407 * 11 10 9 23 23 H 1.09006 * 109.46790 * 299.99781 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.4697 -2.6183 0.0022 12 6 5.9339 -4.0520 0.0026 13 7 6.1558 -4.7499 1.0978 14 7 6.5543 -5.9556 0.9760 15 16 6.6741 -6.3083 -0.5441 16 6 6.1668 -4.7689 -1.1233 17 17 5.9995 -4.2512 -2.7718 18 1 -0.4849 0.8400 0.0004 19 1 3.8745 -0.6801 0.8911 20 1 3.8753 -0.6804 -0.8888 21 1 3.6254 -3.0955 0.7822 22 1 5.8459 -2.1146 0.8925 23 1 5.8473 -2.1140 -0.8874 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393333185.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:58 Heat of formation + Delta-G solvation = 68.714084 kcal Electronic energy + Delta-G solvation = -11749.735281 eV Core-core repulsion = 9365.800619 eV Total energy + Delta-G solvation = -2383.934662 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 233.008 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.04692 -37.10428 -35.74335 -32.83413 -31.60859 -28.03669 -26.93443 -24.56148 -21.27794 -21.19503 -18.78268 -16.96057 -16.40825 -16.00301 -15.14717 -14.25735 -13.87100 -13.69596 -13.01663 -12.61413 -12.55245 -12.41552 -11.77832 -11.65154 -11.06216 -10.67746 -10.67096 -10.24382 -9.99198 -9.78310 -9.48276 -9.34704 -8.61842 -7.64004 -6.08341 -4.07052 -0.03238 0.53953 1.32247 1.99552 2.03963 3.27238 3.34725 3.36137 3.94482 4.39368 4.53996 5.12133 5.22877 5.27818 5.78040 5.87431 6.66203 6.93761 7.49380 7.57804 7.75813 8.16225 8.58495 8.99291 9.52379 11.04794 Molecular weight = 233.01amu Principal moments of inertia in cm(-1) A = 0.041921 B = 0.006162 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.759643 B = 4542.638251 C = 4785.323707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.079 0.921 9 C 0.166 3.834 10 N -0.671 5.671 11 C 0.134 3.866 12 C 0.051 3.949 13 N -0.222 5.222 14 N -0.281 5.281 15 S 0.446 5.554 16 C -0.210 4.210 17 Cl 0.042 6.958 18 H 0.264 0.736 19 H -0.011 1.011 20 H 0.026 0.974 21 H 0.341 0.659 22 H 0.050 0.950 23 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.542 -10.110 -4.154 19.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.555 4.555 8 H 0.098 0.902 9 C 0.038 3.962 10 N -0.303 5.303 11 C 0.001 3.999 12 C -0.095 4.095 13 N -0.089 5.089 14 N -0.261 5.261 15 S 0.580 5.420 16 C -0.376 4.376 17 Cl 0.070 6.930 18 H 0.074 0.926 19 H 0.007 0.993 20 H 0.044 0.956 21 H 0.159 0.841 22 H 0.068 0.932 23 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 15.807 -11.514 -3.876 19.937 hybrid contribution 0.013 2.596 0.082 2.597 sum 15.820 -8.919 -3.794 18.553 Atomic orbital electron populations 1.69897 1.06167 1.26945 1.50713 1.24899 0.94769 0.98954 0.94667 0.86822 0.80292 0.83804 0.78605 1.20099 1.21156 1.19168 1.20997 0.88680 0.94902 1.50925 0.90244 1.20035 0.96879 0.84099 0.95151 1.60594 1.02203 1.17576 1.49917 1.20446 0.92123 0.85050 1.02286 1.22489 1.00377 1.00966 0.85690 1.71355 1.12634 0.98189 1.26702 1.78941 1.21539 1.11729 1.13910 1.81445 1.47763 1.11245 1.01585 1.27879 1.13180 1.02013 0.94504 1.98406 1.95816 1.89481 1.09271 0.92583 0.99319 0.95632 0.84111 0.93156 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 14 2 C 0.07 1.99 5.47 -17.81 -0.10 1.90 14 3 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 14 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 14 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 14 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 14 7 C -0.52 -14.65 9.87 -34.44 -0.34 -14.99 14 8 H 0.08 2.46 8.06 -52.49 -0.42 2.03 14 9 C 0.17 3.93 4.51 -4.98 -0.02 3.91 14 10 N -0.67 -13.74 6.48 -116.34 -0.75 -14.49 14 11 C 0.13 2.24 6.01 -4.97 -0.03 2.21 14 12 C 0.05 0.79 6.40 -83.61 -0.54 0.26 14 13 N -0.22 -3.55 11.68 32.51 0.38 -3.17 14 14 N -0.28 -4.00 12.54 60.35 0.76 -3.25 14 15 S 0.45 4.79 23.40 -107.50 -2.52 2.28 14 16 C -0.21 -2.77 7.28 29.75 0.22 -2.55 14 17 Cl 0.04 0.52 28.83 -51.86 -1.50 -0.98 14 18 H 0.26 7.55 8.31 -40.82 -0.34 7.21 14 19 H -0.01 -0.26 7.20 -51.93 -0.37 -0.63 14 20 H 0.03 0.60 7.57 -51.93 -0.39 0.21 14 21 H 0.34 7.06 8.71 -39.29 -0.34 6.72 14 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 14 23 H 0.09 1.43 7.83 -51.93 -0.41 1.02 14 LS Contribution 240.47 15.07 3.62 3.62 Total: -1.00 -30.63 240.47 -6.24 -36.87 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -1.53 Total: -1.49 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -0.81 Total: -9.28 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 1.16 Total: -47.62 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -2.52 Total: 2.28 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -1.50 Total: -0.98 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.63 -6.24 -36.87 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393333185.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.580 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds