Wall clock time and date at job start Mon Mar 30 2020 03:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00013 * 2 1 4 4 H 1.48493 * 109.47331 * 269.99964 * 3 2 1 5 5 H 1.48499 * 109.46996 * 30.00171 * 3 2 1 6 6 H 1.48500 * 109.47003 * 149.99503 * 3 2 1 7 7 C 1.37881 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99680 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99991 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.46962 * 180.02562 * 9 7 2 11 11 C 1.46907 * 110.99848 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47114 * 179.97438 * 11 10 9 13 13 N 1.31742 * 123.78921 * 270.16240 * 12 11 10 14 14 N 1.27565 * 118.29157 * 180.36958 * 13 12 11 15 15 S 1.56509 * 109.24690 * 359.70866 * 14 13 12 16 16 C 1.35494 * 123.78278 * 89.99580 * 12 11 10 17 17 Cl 1.73599 * 127.93315 * 359.96492 * 16 12 11 18 18 H 0.96993 * 119.99724 * 359.97438 * 1 2 3 19 19 H 1.08994 * 109.46893 * 60.00165 * 9 7 2 20 20 H 1.09006 * 109.47046 * 300.00547 * 9 7 2 21 21 H 1.00900 * 110.99756 * 303.94655 * 10 9 7 22 22 H 1.08994 * 109.47189 * 59.99407 * 11 10 9 23 23 H 1.09006 * 109.46790 * 299.99781 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.4697 -2.6183 0.0022 12 6 5.9339 -4.0520 0.0026 13 7 6.1558 -4.7499 1.0978 14 7 6.5543 -5.9556 0.9760 15 16 6.6741 -6.3083 -0.5441 16 6 6.1668 -4.7689 -1.1233 17 17 5.9995 -4.2512 -2.7718 18 1 -0.4849 0.8400 0.0004 19 1 3.8745 -0.6801 0.8911 20 1 3.8753 -0.6804 -0.8888 21 1 3.6254 -3.0955 0.7822 22 1 5.8459 -2.1146 0.8925 23 1 5.8473 -2.1140 -0.8874 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393333185.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:58 Heat of formation + Delta-G solvation = 45.235022 kcal Electronic energy + Delta-G solvation = -11750.753410 eV Core-core repulsion = 9365.800619 eV Total energy + Delta-G solvation = -2384.952790 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 233.008 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.13802 -38.11498 -37.31377 -34.74916 -33.09358 -29.76436 -28.08482 -26.13509 -23.13269 -22.36014 -19.90574 -18.92987 -17.64114 -17.14183 -16.76012 -16.00160 -15.41688 -15.16811 -14.50303 -14.13803 -13.82836 -13.56784 -13.31176 -13.14250 -12.61364 -12.48489 -12.00123 -11.84591 -11.51926 -11.25914 -10.88983 -10.79187 -10.53291 -9.26842 -8.28655 -6.33794 -1.05966 -0.43791 0.31722 0.88492 1.00210 1.38144 1.40008 1.50679 2.35960 2.81407 3.05639 3.43893 3.59766 4.01222 4.48877 4.58976 4.79300 5.05822 5.49991 5.86065 6.41261 6.52893 6.54588 6.73745 7.30524 8.88045 Molecular weight = 233.01amu Principal moments of inertia in cm(-1) A = 0.041921 B = 0.006162 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.759643 B = 4542.638251 C = 4785.323707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.528 4.528 8 H 0.035 0.965 9 C 0.176 3.824 10 N -0.678 5.678 11 C 0.137 3.863 12 C 0.036 3.964 13 N -0.253 5.253 14 N -0.315 5.315 15 S 0.556 5.444 16 C -0.225 4.225 17 Cl 0.049 6.951 18 H 0.267 0.733 19 H -0.006 1.006 20 H 0.035 0.965 21 H 0.336 0.664 22 H 0.055 0.945 23 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.694 -10.041 -4.857 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.775 3.225 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.566 4.566 8 H 0.053 0.947 9 C 0.048 3.952 10 N -0.309 5.309 11 C 0.005 3.995 12 C -0.112 4.112 13 N -0.118 5.118 14 N -0.295 5.295 15 S 0.689 5.311 16 C -0.390 4.390 17 Cl 0.077 6.923 18 H 0.076 0.924 19 H 0.011 0.989 20 H 0.053 0.947 21 H 0.153 0.847 22 H 0.073 0.927 23 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 17.985 -11.469 -4.575 21.816 hybrid contribution -0.650 2.353 0.220 2.451 sum 17.335 -9.117 -4.355 20.064 Atomic orbital electron populations 1.70060 1.08281 1.28255 1.52248 1.25906 0.95663 1.03434 0.94088 0.85637 0.79386 0.78068 0.79377 1.18793 1.20925 1.17017 1.21282 0.91322 0.93390 1.50637 0.94678 1.19788 0.93720 0.86135 0.95541 1.60461 1.04979 1.15617 1.49869 1.20405 0.89398 0.86653 1.03064 1.22256 1.01813 1.00650 0.86486 1.71386 1.14030 0.98926 1.27466 1.78603 1.22405 1.11411 1.17050 1.81055 1.43997 1.07843 0.98187 1.28111 1.12856 1.03537 0.94545 1.98412 1.95758 1.89633 1.08450 0.92365 0.98870 0.94652 0.84671 0.92710 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.28 13.96 21.45 0.30 -58.98 14 2 C 0.01 0.38 5.47 84.65 0.46 0.84 14 3 Si 0.95 43.29 27.47 68.60 1.88 45.17 14 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 14 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 14 6 H -0.25 -10.33 6.54 99.48 0.65 -9.68 14 7 C -0.53 -30.46 9.87 25.60 0.25 -30.21 14 8 H 0.03 2.27 8.06 -2.91 -0.02 2.24 14 9 C 0.18 8.20 4.51 85.56 0.39 8.59 14 10 N -0.68 -27.47 6.48 -521.99 -3.38 -30.85 14 11 C 0.14 4.40 6.01 85.55 0.51 4.91 14 12 C 0.04 1.05 6.40 41.94 0.27 1.31 14 13 N -0.25 -7.84 11.68 -51.06 -0.60 -8.44 14 14 N -0.31 -8.43 12.54 37.02 0.46 -7.97 14 15 S 0.56 10.44 23.40 -56.49 -1.32 9.12 14 16 C -0.22 -5.47 7.28 67.19 0.49 -4.98 14 17 Cl 0.05 1.11 28.83 -2.72 -0.08 1.03 14 18 H 0.27 15.54 8.31 -92.71 -0.77 14.77 14 19 H -0.01 -0.29 7.20 -2.39 -0.02 -0.31 14 20 H 0.04 1.59 7.57 -2.38 -0.02 1.57 14 21 H 0.34 14.09 8.71 -89.69 -0.78 13.31 14 22 H 0.05 1.71 8.14 -2.39 -0.02 1.69 14 23 H 0.10 3.03 7.83 -2.38 -0.02 3.01 14 Total: -1.00 -66.59 240.47 0.06 -66.53 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 0.42 Total: 3.91 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 2.37 Total: -19.53 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -3.22 Total: -106.23 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Atomic # 16 Polarization: 10.44 SS G_CDS: -1.32 Total: 9.12 kcal Atomic # 17 Polarization: 1.11 SS G_CDS: -0.08 Total: 1.03 kcal Total: -66.59 0.06 -66.53 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393333185.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.765 kcal (2) G-P(sol) polarization free energy of solvation -66.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds