Wall clock time and date at job start Mon Mar 30 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.50699 * 109.47386 * 179.97438 * 13 12 2 15 15 C 1.32588 * 120.00260 * 124.99921 * 14 13 12 16 16 C 1.47784 * 119.99864 * 179.97438 * 15 14 13 17 17 C 1.39967 * 120.92553 * 359.71632 * 16 15 14 18 18 C 1.37930 * 118.99468 * 179.75714 * 17 16 15 19 19 N 1.31946 * 120.90110 * 0.53518 * 18 17 16 20 20 C 1.31946 * 122.05428 * 359.73636 * 19 18 17 21 21 C 1.37932 * 120.89605 * 359.97438 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 26 26 H 1.00902 * 111.00328 * 151.04219 * 12 2 1 27 27 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 28 28 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 29 29 H 1.08003 * 119.99694 * 304.99618 * 14 13 12 30 30 H 1.08003 * 119.99550 * 359.97438 * 15 14 13 31 31 H 1.08001 * 120.50125 * 0.02562 * 17 16 15 32 32 H 1.07998 * 119.55417 * 180.27375 * 18 17 16 33 33 H 1.07995 * 119.54675 * 180.02562 * 20 19 18 34 34 H 1.08007 * 120.49392 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5875 -0.5219 3.5559 15 6 3.6450 -0.0724 4.2174 16 6 4.1398 -0.8022 5.4034 17 6 3.5033 -1.9665 5.8488 18 6 4.0018 -2.6187 6.9572 19 7 5.0558 -2.1533 7.6003 20 6 5.6818 -1.0567 7.2174 21 6 5.2543 -0.3450 6.1160 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7093 1.1619 -3.4844 26 1 2.9173 -1.1205 1.0286 27 1 2.7589 1.0462 2.1181 28 1 1.0871 0.6162 2.5525 29 1 2.0879 -1.4216 3.8837 30 1 4.1447 0.8271 3.8894 31 1 2.6376 -2.3508 5.3298 32 1 3.5205 -3.5204 7.3060 33 1 6.5411 -0.7123 7.7736 34 1 5.7719 0.5516 5.8081 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393635145.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:33 Heat of formation + Delta-G solvation = 26.183584 kcal Electronic energy + Delta-G solvation = -14896.625399 eV Core-core repulsion = 12407.618555 eV Total energy + Delta-G solvation = -2489.006844 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.95272 -38.16725 -36.15513 -34.40141 -32.35014 -32.02550 -29.82775 -27.42462 -26.18329 -24.51526 -23.41320 -21.73259 -20.58637 -18.62110 -17.95131 -17.07193 -16.86846 -16.44528 -15.96980 -15.50308 -14.95201 -14.84875 -14.61627 -14.32179 -14.11017 -13.57286 -13.26378 -12.90015 -12.71196 -12.60501 -12.32809 -12.19881 -12.04131 -11.82451 -11.75271 -10.92600 -10.57997 -10.44380 -10.09074 -9.50652 -9.11305 -8.14385 -6.28977 -0.16083 0.23963 1.42833 1.44578 1.52063 1.55623 2.41313 2.98975 3.14371 3.45991 3.61037 3.77914 3.90675 4.12897 4.19739 4.28802 4.39153 4.64475 4.72605 4.74803 4.84357 4.92871 5.03912 5.06958 5.19190 5.21438 5.45072 5.60325 5.64950 5.70911 5.80217 5.86401 6.21352 6.43134 6.74106 6.97000 7.04841 7.41652 8.91081 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.046321 B = 0.003963 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.338794 B = 7064.372390 C = 7254.262259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.213 3.787 3 H -0.028 1.028 4 C -0.541 4.541 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.683 5.683 13 C 0.084 3.916 14 C -0.102 4.102 15 C -0.137 4.137 16 C -0.015 4.015 17 C -0.180 4.180 18 C 0.092 3.908 19 N -0.519 5.519 20 C 0.091 3.909 21 C -0.171 4.171 22 H 0.024 0.976 23 H 0.028 0.972 24 H 0.057 0.943 25 H 0.263 0.737 26 H 0.334 0.666 27 H 0.024 0.976 28 H 0.074 0.926 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.147 0.853 32 H 0.176 0.824 33 H 0.180 0.820 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.486 -2.411 15.868 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 H -0.011 1.011 4 C -0.579 4.579 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.314 5.314 13 C -0.045 4.045 14 C -0.121 4.121 15 C -0.156 4.156 16 C -0.023 4.023 17 C -0.200 4.200 18 C -0.064 4.064 19 N -0.229 5.229 20 C -0.065 4.065 21 C -0.191 4.191 22 H 0.043 0.957 23 H 0.047 0.953 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.151 0.849 27 H 0.042 0.958 28 H 0.092 0.908 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.165 0.835 32 H 0.193 0.807 33 H 0.197 0.803 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.081 -2.984 16.634 17.960 hybrid contribution 0.478 0.846 -2.007 2.230 sum 6.559 -2.138 14.627 16.172 Atomic orbital electron populations 1.21555 0.97611 0.98969 0.99166 1.18949 0.92849 0.90896 0.86790 1.01064 1.21572 1.31891 1.12831 0.91641 0.92208 1.25730 0.95113 0.95654 1.02057 1.70009 1.37367 1.24011 1.24317 0.85543 0.78739 0.78674 0.78257 1.19619 1.20907 1.19565 1.60638 1.32303 1.33213 1.05225 1.21036 1.00209 0.93506 0.89750 1.23415 0.95576 0.99016 0.94125 1.21703 0.97857 1.00721 0.95342 1.19634 0.94500 0.94092 0.94088 1.22546 1.02219 0.96313 0.98888 1.23040 0.92145 0.99486 0.91698 1.67680 1.09164 1.14137 1.31880 1.23121 0.98800 0.90316 0.94262 1.22530 0.97245 1.02421 0.96883 0.95733 0.95257 0.92434 0.92766 0.84898 0.95768 0.90788 0.85581 0.85334 0.83522 0.80671 0.80293 0.82675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.68 9.19 71.98 0.66 -5.02 16 2 C 0.21 10.80 2.60 44.17 0.11 10.92 16 3 H -0.03 -1.57 7.80 -2.39 -0.02 -1.59 16 4 C -0.54 -29.56 8.59 25.60 0.22 -29.34 16 5 H 0.06 3.18 7.62 -2.91 -0.02 3.16 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -52.58 11.32 21.45 0.24 -52.34 16 8 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 12 N -0.68 -28.29 6.29 -499.47 -3.14 -31.43 16 13 C 0.08 2.84 5.93 85.56 0.51 3.34 16 14 C -0.10 -2.73 9.22 24.53 0.23 -2.50 16 15 C -0.14 -3.25 9.56 23.64 0.23 -3.03 16 16 C -0.02 -0.34 5.90 -19.92 -0.12 -0.46 16 17 C -0.18 -3.81 9.47 22.62 0.21 -3.60 16 18 C 0.09 1.88 11.17 84.60 0.94 2.83 16 19 N -0.52 -11.76 10.35 -196.17 -2.03 -13.79 16 20 C 0.09 1.73 11.17 84.60 0.95 2.68 16 21 C -0.17 -3.28 9.89 22.62 0.22 -3.06 16 22 H 0.02 1.06 7.45 -2.39 -0.02 1.05 16 23 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 3.13 6.07 -2.38 -0.01 3.11 16 25 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.33 13.58 8.22 -89.69 -0.74 12.84 16 27 H 0.02 0.83 7.73 -2.39 -0.02 0.82 16 28 H 0.07 2.54 7.44 -2.39 -0.02 2.52 16 29 H 0.13 3.14 6.13 -2.91 -0.02 3.12 16 30 H 0.13 2.83 7.87 -2.91 -0.02 2.80 16 31 H 0.15 2.74 6.30 -2.91 -0.02 2.72 16 32 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -61.91 290.05 2.07 -59.85 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.36 Total: 18.67 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 4.61 Total: -26.02 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -4.93 Total: -97.56 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -61.91 2.07 -59.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393635145.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.030 kcal (2) G-P(sol) polarization free energy of solvation -61.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds