Wall clock time and date at job start Mon Mar 30 2020 03:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46689 * 2 1 4 4 C 1.50696 * 109.47261 * 240.00102 * 2 1 3 5 5 H 1.07994 * 119.99962 * 239.99735 * 4 2 1 6 6 C 1.37883 * 119.99848 * 59.99975 * 4 2 1 7 7 N 1.31513 * 120.00115 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99666 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47400 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47350 * 119.99849 * 8 6 4 11 11 H 1.48505 * 109.46865 * 239.99932 * 8 6 4 12 12 N 1.46902 * 109.47042 * 119.99843 * 2 1 3 13 13 C 1.46896 * 111.00334 * 275.00402 * 12 2 1 14 14 C 1.50692 * 109.47348 * 180.02562 * 13 12 2 15 15 C 1.32592 * 120.00569 * 127.36205 * 14 13 12 16 16 C 1.47782 * 119.99678 * 8.09599 * 15 14 13 17 17 C 1.39963 * 120.92553 * 217.13448 * 16 15 14 18 18 C 1.37931 * 119.00168 * 179.75374 * 17 16 15 19 19 N 1.31945 * 120.89300 * 0.53383 * 18 17 16 20 20 C 1.31940 * 122.06040 * 359.73386 * 19 18 17 21 21 C 1.37935 * 120.89596 * 359.97438 * 20 19 18 22 22 H 1.08996 * 109.47591 * 60.00195 * 1 2 3 23 23 H 1.09004 * 109.47512 * 299.99354 * 1 2 3 24 24 H 1.09010 * 109.46945 * 179.97438 * 1 2 3 25 25 H 0.97001 * 120.00095 * 180.02562 * 7 6 4 26 26 H 1.00901 * 110.99737 * 151.04565 * 12 2 1 27 27 H 1.09005 * 109.46874 * 300.00254 * 13 12 2 28 28 H 1.08998 * 109.47106 * 59.99712 * 13 12 2 29 29 H 1.07998 * 119.99865 * 307.36046 * 14 13 12 30 30 H 1.07999 * 120.00592 * 188.09644 * 15 14 13 31 31 H 1.08009 * 120.50431 * 359.97438 * 17 16 15 32 32 H 1.07994 * 119.55631 * 180.27207 * 18 17 16 33 33 H 1.07994 * 119.55249 * 180.02562 * 20 19 18 34 34 H 1.07997 * 120.49642 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 3.1465 -2.2869 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1467 -0.1872 -4.8164 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2225 2.3469 14 6 2.5884 -0.5215 3.5557 15 6 3.6169 -0.0462 4.2444 16 6 4.1530 1.2968 3.9393 17 6 5.5278 1.5528 3.9979 18 6 5.9854 2.8195 3.7003 19 7 5.1459 3.7840 3.3747 20 6 3.8427 3.5869 3.3129 21 6 3.2996 2.3495 3.5891 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 0.7081 1.1609 -3.4844 26 1 2.9173 -1.1205 1.0287 27 1 2.7588 1.0462 2.1183 28 1 1.0870 0.6162 2.5525 29 1 2.1133 -1.4420 3.8611 30 1 4.0629 -0.6403 5.0283 31 1 6.2203 0.7694 4.2685 32 1 7.0447 3.0258 3.7383 33 1 3.1926 4.4054 3.0415 34 1 2.2320 2.1953 3.5362 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393635146.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:35 Heat of formation + Delta-G solvation = 52.608607 kcal Electronic energy + Delta-G solvation = -15537.042321 eV Core-core repulsion = 13049.181352 eV Total energy + Delta-G solvation = -2487.860969 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.07694 -36.72360 -34.71938 -32.42886 -31.23646 -30.53842 -28.32535 -25.53000 -24.70231 -23.29443 -22.64592 -19.81189 -19.31852 -16.86790 -16.24112 -15.83182 -15.65108 -15.12182 -14.77593 -13.86411 -13.79970 -13.62609 -13.29761 -13.07717 -12.41843 -11.95756 -11.56262 -11.55356 -11.12286 -10.85473 -10.72161 -10.45116 -10.17905 -10.09930 -9.92820 -9.40021 -9.06458 -8.87220 -8.56502 -8.47326 -7.29204 -6.05144 -4.11631 1.00594 1.22880 2.46381 3.27389 3.35177 3.39330 3.94144 4.38624 4.52677 4.69653 4.87606 5.04972 5.16875 5.26290 5.26546 5.45916 5.60232 5.74098 5.84534 5.98340 6.07715 6.18970 6.32683 6.60672 6.72037 6.80817 6.87596 7.09659 7.19558 7.45938 7.75607 7.86081 8.05541 8.23567 8.33362 8.62092 8.98385 9.54487 11.01328 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.027218 B = 0.005957 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.467728 B = 4698.904703 C = 5011.050420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.686 5.686 13 C 0.065 3.935 14 C -0.095 4.095 15 C -0.159 4.159 16 C -0.001 4.001 17 C -0.170 4.170 18 C 0.094 3.906 19 N -0.493 5.493 20 C 0.097 3.903 21 C -0.160 4.160 22 H 0.081 0.919 23 H 0.003 0.997 24 H 0.032 0.968 25 H 0.261 0.739 26 H 0.331 0.669 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.547 1.342 13.126 14.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.018 0.982 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.317 5.317 13 C -0.063 4.063 14 C -0.114 4.114 15 C -0.177 4.177 16 C -0.009 4.009 17 C -0.190 4.190 18 C -0.063 4.063 19 N -0.202 5.202 20 C -0.059 4.059 21 C -0.179 4.179 22 H 0.100 0.900 23 H 0.023 0.977 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.148 0.852 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.151 0.849 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.162 2.057 12.942 14.084 hybrid contribution 0.688 -0.841 -0.937 1.435 sum 5.850 1.216 12.004 13.409 Atomic orbital electron populations 1.21722 0.97817 0.99388 0.99362 1.19116 0.92613 0.92350 0.85472 0.98171 1.21286 1.31473 1.12538 0.90427 0.92180 1.24922 0.95022 0.94991 0.99075 1.69902 1.36606 1.22905 1.23414 0.86465 0.78637 0.79623 0.82835 1.19746 1.20897 1.21063 1.60702 1.32107 1.33053 1.05809 1.21511 1.00073 0.94572 0.90183 1.23632 0.93894 0.99564 0.94331 1.21551 0.98843 0.94256 1.03095 1.19460 0.93105 0.93938 0.94435 1.22226 0.95411 0.98593 1.02766 1.22613 0.99560 0.88942 0.95180 1.67609 1.04331 1.35142 1.13138 1.22676 0.91456 0.96239 0.95525 1.22471 1.01514 0.93540 1.00413 0.90033 0.97746 0.94915 0.92934 0.85169 0.94120 0.90727 0.85914 0.85869 0.84942 0.83051 0.82767 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 9.19 37.16 0.34 -2.75 16 2 C 0.21 5.38 2.60 -68.86 -0.18 5.20 16 3 H 0.00 0.02 7.80 -51.93 -0.40 -0.39 16 4 C -0.52 -14.33 8.59 -34.44 -0.30 -14.63 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.54 11.32 55.43 0.63 -24.91 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.69 -14.58 6.29 -109.22 -0.69 -15.27 16 13 C 0.07 1.14 4.25 -4.98 -0.02 1.12 16 14 C -0.10 -1.33 9.74 -36.22 -0.35 -1.69 16 15 C -0.16 -1.99 9.84 -37.58 -0.37 -2.36 16 16 C 0.00 -0.02 5.19 -104.70 -0.54 -0.56 16 17 C -0.17 -2.11 9.89 -39.05 -0.39 -2.49 16 18 C 0.09 1.20 11.17 -17.62 -0.20 1.00 16 19 N -0.49 -7.32 10.35 -13.36 -0.14 -7.46 16 20 C 0.10 1.37 11.17 -17.62 -0.20 1.17 16 21 C -0.16 -2.23 7.42 -39.05 -0.29 -2.52 16 22 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 23 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 24 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.33 7.01 8.22 -39.29 -0.32 6.68 16 27 H 0.04 0.75 4.71 -51.93 -0.24 0.51 16 28 H 0.07 1.31 7.30 -51.93 -0.38 0.93 16 29 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.14 1.84 6.39 -52.49 -0.34 1.50 16 LS Contribution 285.46 15.07 4.30 4.30 Total: -1.00 -30.03 285.46 -7.96 -37.99 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.46 Total: 5.86 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -2.58 Total: -16.88 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -0.20 Total: -47.63 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.03 -7.96 -37.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393635146.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.599 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds