Wall clock time and date at job start Mon Mar 30 2020 03:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46689 * 2 1 4 4 C 1.50696 * 109.47261 * 240.00102 * 2 1 3 5 5 H 1.07994 * 119.99962 * 239.99735 * 4 2 1 6 6 C 1.37883 * 119.99848 * 59.99975 * 4 2 1 7 7 N 1.31513 * 120.00115 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99666 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47400 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47350 * 119.99849 * 8 6 4 11 11 H 1.48505 * 109.46865 * 239.99932 * 8 6 4 12 12 N 1.46902 * 109.47042 * 119.99843 * 2 1 3 13 13 C 1.46896 * 111.00334 * 275.00402 * 12 2 1 14 14 C 1.50692 * 109.47348 * 180.02562 * 13 12 2 15 15 C 1.32592 * 120.00569 * 127.36205 * 14 13 12 16 16 C 1.47782 * 119.99678 * 8.09599 * 15 14 13 17 17 C 1.39963 * 120.92553 * 217.13448 * 16 15 14 18 18 C 1.37931 * 119.00168 * 179.75374 * 17 16 15 19 19 N 1.31945 * 120.89300 * 0.53383 * 18 17 16 20 20 C 1.31940 * 122.06040 * 359.73386 * 19 18 17 21 21 C 1.37935 * 120.89596 * 359.97438 * 20 19 18 22 22 H 1.08996 * 109.47591 * 60.00195 * 1 2 3 23 23 H 1.09004 * 109.47512 * 299.99354 * 1 2 3 24 24 H 1.09010 * 109.46945 * 179.97438 * 1 2 3 25 25 H 0.97001 * 120.00095 * 180.02562 * 7 6 4 26 26 H 1.00901 * 110.99737 * 151.04565 * 12 2 1 27 27 H 1.09005 * 109.46874 * 300.00254 * 13 12 2 28 28 H 1.08998 * 109.47106 * 59.99712 * 13 12 2 29 29 H 1.07998 * 119.99865 * 307.36046 * 14 13 12 30 30 H 1.07999 * 120.00592 * 188.09644 * 15 14 13 31 31 H 1.08009 * 120.50431 * 359.97438 * 17 16 15 32 32 H 1.07994 * 119.55631 * 180.27207 * 18 17 16 33 33 H 1.07994 * 119.55249 * 180.02562 * 20 19 18 34 34 H 1.07997 * 120.49642 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 3.1465 -2.2869 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1467 -0.1872 -4.8164 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2225 2.3469 14 6 2.5884 -0.5215 3.5557 15 6 3.6169 -0.0462 4.2444 16 6 4.1530 1.2968 3.9393 17 6 5.5278 1.5528 3.9979 18 6 5.9854 2.8195 3.7003 19 7 5.1459 3.7840 3.3747 20 6 3.8427 3.5869 3.3129 21 6 3.2996 2.3495 3.5891 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 0.7081 1.1609 -3.4844 26 1 2.9173 -1.1205 1.0287 27 1 2.7588 1.0462 2.1183 28 1 1.0870 0.6162 2.5525 29 1 2.1133 -1.4420 3.8611 30 1 4.0629 -0.6403 5.0283 31 1 6.2203 0.7694 4.2685 32 1 7.0447 3.0258 3.7383 33 1 3.1926 4.4054 3.0415 34 1 2.2320 2.1953 3.5362 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393635146.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:34 Heat of formation + Delta-G solvation = 33.479268 kcal Electronic energy + Delta-G solvation = -15537.871831 eV Core-core repulsion = 13049.181352 eV Total energy + Delta-G solvation = -2488.690480 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.11050 -38.23544 -36.23723 -34.23354 -32.33909 -31.79566 -30.00039 -27.46513 -26.25879 -24.32708 -23.86656 -21.74917 -20.42911 -18.64875 -17.48611 -17.08182 -16.86233 -16.62716 -16.26156 -15.55987 -15.14234 -14.73588 -14.65905 -14.35005 -14.09219 -13.62896 -13.17244 -12.86910 -12.70558 -12.63391 -12.47957 -12.22307 -12.12381 -11.75073 -11.29590 -10.90172 -10.61057 -10.44556 -10.09806 -9.64544 -9.02486 -8.16160 -6.30560 -0.04643 0.21455 1.39428 1.40414 1.42254 1.53112 2.39609 2.90872 3.12649 3.55363 3.64222 3.74601 3.91722 4.11928 4.17703 4.24842 4.47110 4.62946 4.69062 4.82036 4.84143 4.97777 4.98409 5.05035 5.18979 5.25562 5.44244 5.53690 5.63502 5.70549 5.79624 5.88083 6.19995 6.42238 6.73792 6.96092 7.02795 7.40094 8.89793 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.027218 B = 0.005957 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.467728 B = 4698.904703 C = 5011.050420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.216 3.784 3 H -0.034 1.034 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.281 1.281 12 N -0.682 5.682 13 C 0.070 3.930 14 C -0.111 4.111 15 C -0.132 4.132 16 C -0.022 4.022 17 C -0.166 4.166 18 C 0.084 3.916 19 N -0.518 5.518 20 C 0.080 3.920 21 C -0.172 4.172 22 H 0.056 0.944 23 H 0.023 0.977 24 H 0.029 0.971 25 H 0.263 0.737 26 H 0.332 0.668 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.139 0.861 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.181 0.819 33 H 0.165 0.835 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.840 0.112 13.970 15.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 H -0.017 1.017 4 C -0.577 4.577 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.207 1.207 12 N -0.313 5.313 13 C -0.059 4.059 14 C -0.130 4.130 15 C -0.151 4.151 16 C -0.030 4.030 17 C -0.185 4.185 18 C -0.072 4.072 19 N -0.228 5.228 20 C -0.075 4.075 21 C -0.191 4.191 22 H 0.075 0.925 23 H 0.042 0.958 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.156 0.844 30 H 0.175 0.825 31 H 0.181 0.819 32 H 0.198 0.802 33 H 0.183 0.817 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.454 0.823 13.808 15.264 hybrid contribution 0.343 -0.387 -1.127 1.240 sum 6.797 0.436 12.681 14.395 Atomic orbital electron populations 1.21544 0.97548 0.98994 0.99097 1.18907 0.92829 0.90596 0.86882 1.01674 1.21620 1.31719 1.12717 0.91646 0.92264 1.25751 0.95149 0.95678 1.02113 1.70028 1.37431 1.24087 1.24170 0.85437 0.78195 0.78601 0.78987 1.18969 1.20345 1.20731 1.60611 1.32095 1.33362 1.05223 1.21475 0.99924 0.94133 0.90346 1.23415 0.95334 1.00426 0.93838 1.21830 0.97229 0.93447 1.02583 1.19778 0.93930 0.94396 0.94881 1.22573 0.95307 0.99190 1.01443 1.23177 1.00746 0.88913 0.94346 1.67631 1.04747 1.36373 1.13998 1.22929 0.91760 0.96900 0.95960 1.22570 1.01747 0.93999 1.00828 0.92499 0.95792 0.95149 0.92797 0.85151 0.95125 0.91296 0.84367 0.82501 0.81863 0.80190 0.81739 0.84431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.71 9.19 71.98 0.66 -5.05 16 2 C 0.22 11.18 2.60 44.17 0.11 11.30 16 3 H -0.03 -1.98 7.80 -2.39 -0.02 -1.99 16 4 C -0.54 -29.98 8.59 25.60 0.22 -29.76 16 5 H 0.06 3.23 7.62 -2.91 -0.02 3.21 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -53.46 11.32 21.45 0.24 -53.21 16 8 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 N -0.68 -28.92 6.29 -499.48 -3.14 -32.07 16 13 C 0.07 2.41 4.25 85.56 0.36 2.78 16 14 C -0.11 -2.90 9.74 24.53 0.24 -2.66 16 15 C -0.13 -2.95 9.84 23.64 0.23 -2.71 16 16 C -0.02 -0.55 5.19 -19.92 -0.10 -0.66 16 17 C -0.17 -3.67 9.89 22.62 0.22 -3.45 16 18 C 0.08 2.01 11.17 84.60 0.95 2.95 16 19 N -0.52 -15.07 10.35 -196.18 -2.03 -17.10 16 20 C 0.08 2.27 11.17 84.60 0.95 3.21 16 21 C -0.17 -4.76 7.42 22.62 0.17 -4.59 16 22 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 23 H 0.02 1.06 7.45 -2.39 -0.02 1.04 16 24 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.33 13.90 8.22 -89.69 -0.74 13.16 16 27 H 0.03 1.14 4.71 -2.38 -0.01 1.13 16 28 H 0.07 2.42 7.30 -2.39 -0.02 2.41 16 29 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 31 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.17 4.01 8.06 -2.91 -0.02 3.99 16 34 H 0.14 3.71 6.39 -2.91 -0.02 3.69 16 Total: -1.00 -64.38 285.46 1.91 -62.46 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.36 Total: 21.61 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 4.46 Total: -27.50 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -4.93 Total: -102.38 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -64.38 1.91 -62.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393635146.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.943 kcal (2) G-P(sol) polarization free energy of solvation -64.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds