Wall clock time and date at job start Mon Mar 30 2020 03:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47260 * 2 1 4 4 C 1.50704 * 109.46640 * 119.99422 * 2 1 3 5 5 H 1.08007 * 119.99613 * 120.00970 * 4 2 1 6 6 C 1.37880 * 120.00306 * 299.99678 * 4 2 1 7 7 N 1.31512 * 119.99602 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99984 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46936 * 60.00343 * 8 6 4 10 10 H 1.48498 * 109.47032 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47184 * 300.00562 * 8 6 4 12 12 N 1.46896 * 109.47244 * 239.99334 * 2 1 3 13 13 C 1.46898 * 110.99591 * 85.00282 * 12 2 1 14 14 C 1.50701 * 109.47094 * 179.97438 * 13 12 2 15 15 C 1.32599 * 119.99913 * 126.79976 * 14 13 12 16 16 C 1.47781 * 119.99673 * 8.75693 * 15 14 13 17 17 C 1.39968 * 120.92540 * 220.07223 * 16 15 14 18 18 C 1.37933 * 118.99795 * 179.75620 * 17 16 15 19 19 N 1.31939 * 120.89832 * 0.53812 * 18 17 16 20 20 C 1.31948 * 122.05499 * 359.73628 * 19 18 17 21 21 C 1.37924 * 120.90076 * 359.97438 * 20 19 18 22 22 H 1.09002 * 109.47224 * 60.00958 * 1 2 3 23 23 H 1.09001 * 109.46814 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47368 * 300.00426 * 1 2 3 25 25 H 0.97004 * 119.99390 * 179.97438 * 7 6 4 26 26 H 1.00894 * 111.00655 * 321.04880 * 12 2 1 27 27 H 1.09007 * 109.47445 * 60.00158 * 13 12 2 28 28 H 1.09003 * 109.47212 * 299.99564 * 13 12 2 29 29 H 1.08000 * 120.00429 * 306.80852 * 14 13 12 30 30 H 1.08002 * 120.00141 * 188.48090 * 15 14 13 31 31 H 1.08001 * 120.50018 * 0.02562 * 17 16 15 32 32 H 1.07993 * 119.55054 * 180.27079 * 18 17 16 33 33 H 1.08004 * 119.54600 * 180.02562 * 20 19 18 34 34 H 1.08005 * 120.50322 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9427 0.8299 2.6033 8 14 2.3223 -1.1192 4.0081 9 1 3.8073 -1.1187 4.0079 10 1 1.8267 -0.4195 5.2205 11 1 1.8279 -2.5195 4.0084 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3468 14 6 2.5886 -0.5217 -3.5556 15 6 1.8973 -0.4969 -4.6868 16 6 0.7390 0.4104 -4.8251 17 6 -0.4281 -0.0070 -5.4753 18 6 -1.4872 0.8708 -5.5773 19 7 -1.4060 2.0909 -5.0818 20 6 -0.3230 2.5263 -4.4665 21 6 0.7806 1.7130 -4.3147 22 1 -0.3634 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7081 1.1612 3.4844 26 1 1.4497 -1.4980 -1.4099 27 1 2.7590 1.0461 -2.1182 28 1 1.0871 0.6161 -2.5525 29 1 3.5142 -1.0754 -3.5005 30 1 2.1834 -1.1365 -5.5087 31 1 -0.5000 -1.0029 -5.8870 32 1 -2.3935 0.5566 -6.0733 33 1 -0.3007 3.5329 -4.0758 34 1 1.6637 2.0759 -3.8096 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393635147.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:37 Heat of formation + Delta-G solvation = 52.103911 kcal Electronic energy + Delta-G solvation = -15562.401108 eV Core-core repulsion = 13074.518253 eV Total energy + Delta-G solvation = -2487.882854 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.09158 -36.77192 -34.75346 -32.41783 -31.25448 -30.59554 -28.26813 -25.24803 -24.76889 -23.30814 -22.67969 -20.20997 -19.30693 -16.77104 -16.24167 -15.82921 -15.65708 -15.13759 -14.73940 -13.87271 -13.73718 -13.41308 -13.32621 -13.28554 -12.47641 -11.79123 -11.69440 -11.51292 -11.27144 -10.88972 -10.77678 -10.48198 -10.21691 -10.11925 -9.86012 -9.43318 -9.12180 -9.00159 -8.60209 -8.36711 -7.24525 -5.98942 -4.02680 0.99728 1.19958 2.42361 3.34263 3.38200 3.41465 3.90802 4.43766 4.49738 4.67805 4.86016 5.03675 5.14807 5.24308 5.32421 5.44805 5.58635 5.72025 5.81853 5.96406 6.07346 6.17681 6.31215 6.59496 6.67502 6.71093 6.80490 6.84702 7.08068 7.34482 7.72692 7.86516 8.02503 8.25231 8.49525 8.58868 9.03964 9.62639 11.08049 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.038473 B = 0.005501 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.615846 B = 5088.388842 C = 5489.785850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.213 3.787 3 H 0.033 0.967 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.681 5.681 13 C 0.066 3.934 14 C -0.094 4.094 15 C -0.160 4.160 16 C 0.000 4.000 17 C -0.171 4.171 18 C 0.094 3.906 19 N -0.493 5.493 20 C 0.097 3.903 21 C -0.159 4.159 22 H 0.003 0.997 23 H 0.027 0.973 24 H 0.089 0.911 25 H 0.260 0.740 26 H 0.326 0.674 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -0.300 -14.929 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.105 3.895 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.310 5.310 13 C -0.062 4.062 14 C -0.113 4.113 15 C -0.179 4.179 16 C -0.008 4.008 17 C -0.191 4.191 18 C -0.063 4.063 19 N -0.202 5.202 20 C -0.059 4.059 21 C -0.179 4.179 22 H 0.022 0.978 23 H 0.046 0.954 24 H 0.108 0.892 25 H 0.070 0.930 26 H 0.142 0.858 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.934 0.483 -14.681 14.719 hybrid contribution 0.052 -0.977 0.771 1.245 sum -0.883 -0.494 -13.911 13.947 Atomic orbital electron populations 1.22416 1.00665 0.99153 1.00434 1.19174 0.89610 0.94362 0.86330 0.94906 1.21116 1.30364 1.12509 0.89578 0.91982 1.24958 0.95310 0.95207 0.99060 1.69877 1.37177 1.23178 1.23495 0.86549 0.79167 0.79594 0.81992 1.20268 1.21436 1.20371 1.60791 1.58173 1.09023 1.03024 1.21425 0.99059 0.95982 0.89769 1.23650 0.97405 0.96694 0.93568 1.21555 0.95960 1.00915 0.99505 1.19463 0.93903 0.93491 0.93909 1.22237 0.94057 1.01191 1.01584 1.22616 0.98037 0.89241 0.96363 1.67616 1.26662 1.16373 1.09565 1.22674 0.88511 0.99914 0.94793 1.22433 1.00895 0.94133 1.00425 0.97799 0.95415 0.89206 0.92978 0.85800 0.90706 0.94344 0.85859 0.85848 0.84943 0.83056 0.82778 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.94 37.16 0.33 -3.78 16 2 C 0.21 5.36 2.57 -68.87 -0.18 5.18 16 3 H 0.03 0.90 7.80 -51.93 -0.40 0.50 16 4 C -0.50 -13.80 8.84 -34.44 -0.30 -14.10 16 5 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.80 11.32 55.43 0.63 -25.17 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.68 -14.36 6.22 -109.22 -0.68 -15.04 16 13 C 0.07 1.15 4.34 -4.98 -0.02 1.13 16 14 C -0.09 -1.31 9.73 -36.21 -0.35 -1.66 16 15 C -0.16 -1.98 9.83 -37.58 -0.37 -2.35 16 16 C 0.00 0.01 5.08 -104.70 -0.53 -0.53 16 17 C -0.17 -2.06 9.89 -39.05 -0.39 -2.45 16 18 C 0.09 1.17 11.17 -17.62 -0.20 0.97 16 19 N -0.49 -7.11 10.35 -13.36 -0.14 -7.25 16 20 C 0.10 1.32 11.17 -17.62 -0.20 1.13 16 21 C -0.16 -2.16 7.47 -39.05 -0.29 -2.45 16 22 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 23 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 24 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.33 6.66 8.46 -39.29 -0.33 6.33 16 27 H 0.07 1.32 7.99 -51.92 -0.41 0.91 16 28 H 0.04 0.69 4.27 -51.93 -0.22 0.47 16 29 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.15 1.75 8.06 -52.48 -0.42 1.33 16 34 H 0.14 1.76 6.74 -52.48 -0.35 1.40 16 LS Contribution 286.40 15.07 4.32 4.32 Total: -1.00 -29.96 286.40 -8.00 -37.96 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -4.51 Total: 6.14 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -2.59 Total: -17.45 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.19 Total: -47.47 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.96 -8.00 -37.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393635147.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.063 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds