Wall clock time and date at job start Mon Mar 30 2020 03:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47260 * 2 1 4 4 C 1.50704 * 109.46640 * 119.99422 * 2 1 3 5 5 H 1.08007 * 119.99613 * 120.00970 * 4 2 1 6 6 C 1.37880 * 120.00306 * 299.99678 * 4 2 1 7 7 N 1.31512 * 119.99602 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99984 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46936 * 60.00343 * 8 6 4 10 10 H 1.48498 * 109.47032 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47184 * 300.00562 * 8 6 4 12 12 N 1.46896 * 109.47244 * 239.99334 * 2 1 3 13 13 C 1.46898 * 110.99591 * 85.00282 * 12 2 1 14 14 C 1.50701 * 109.47094 * 179.97438 * 13 12 2 15 15 C 1.32599 * 119.99913 * 126.79976 * 14 13 12 16 16 C 1.47781 * 119.99673 * 8.75693 * 15 14 13 17 17 C 1.39968 * 120.92540 * 220.07223 * 16 15 14 18 18 C 1.37933 * 118.99795 * 179.75620 * 17 16 15 19 19 N 1.31939 * 120.89832 * 0.53812 * 18 17 16 20 20 C 1.31948 * 122.05499 * 359.73628 * 19 18 17 21 21 C 1.37924 * 120.90076 * 359.97438 * 20 19 18 22 22 H 1.09002 * 109.47224 * 60.00958 * 1 2 3 23 23 H 1.09001 * 109.46814 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47368 * 300.00426 * 1 2 3 25 25 H 0.97004 * 119.99390 * 179.97438 * 7 6 4 26 26 H 1.00894 * 111.00655 * 321.04880 * 12 2 1 27 27 H 1.09007 * 109.47445 * 60.00158 * 13 12 2 28 28 H 1.09003 * 109.47212 * 299.99564 * 13 12 2 29 29 H 1.08000 * 120.00429 * 306.80852 * 14 13 12 30 30 H 1.08002 * 120.00141 * 188.48090 * 15 14 13 31 31 H 1.08001 * 120.50018 * 0.02562 * 17 16 15 32 32 H 1.07993 * 119.55054 * 180.27079 * 18 17 16 33 33 H 1.08004 * 119.54600 * 180.02562 * 20 19 18 34 34 H 1.08005 * 120.50322 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9427 0.8299 2.6033 8 14 2.3223 -1.1192 4.0081 9 1 3.8073 -1.1187 4.0079 10 1 1.8267 -0.4195 5.2205 11 1 1.8279 -2.5195 4.0084 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3468 14 6 2.5886 -0.5217 -3.5556 15 6 1.8973 -0.4969 -4.6868 16 6 0.7390 0.4104 -4.8251 17 6 -0.4281 -0.0070 -5.4753 18 6 -1.4872 0.8708 -5.5773 19 7 -1.4060 2.0909 -5.0818 20 6 -0.3230 2.5263 -4.4665 21 6 0.7806 1.7130 -4.3147 22 1 -0.3634 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7081 1.1612 3.4844 26 1 1.4497 -1.4980 -1.4099 27 1 2.7590 1.0461 -2.1182 28 1 1.0871 0.6161 -2.5525 29 1 3.5142 -1.0754 -3.5005 30 1 2.1834 -1.1365 -5.5087 31 1 -0.5000 -1.0029 -5.8870 32 1 -2.3935 0.5566 -6.0733 33 1 -0.3007 3.5329 -4.0758 34 1 1.6637 2.0759 -3.8096 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393635147.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:36 Heat of formation + Delta-G solvation = 33.120877 kcal Electronic energy + Delta-G solvation = -15563.224274 eV Core-core repulsion = 13074.518253 eV Total energy + Delta-G solvation = -2488.706021 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.09372 -38.29099 -36.22763 -34.23581 -32.32319 -31.83127 -29.91026 -27.28733 -26.21597 -24.30593 -23.86508 -22.15912 -20.39344 -18.47851 -17.52870 -17.07258 -16.77406 -16.55005 -16.36162 -15.27105 -15.22985 -14.66158 -14.62100 -14.52623 -14.06238 -13.58604 -13.28944 -12.93484 -12.81712 -12.61893 -12.37311 -12.25866 -12.16591 -11.77037 -11.28506 -11.02484 -10.49664 -10.44333 -10.09713 -9.66688 -8.94775 -8.10453 -6.22426 -0.02773 0.21993 1.38750 1.44152 1.45693 1.53666 2.44251 2.90980 3.17791 3.56392 3.65127 3.75311 3.93496 4.12646 4.18036 4.25317 4.45444 4.61103 4.68934 4.72998 4.83130 4.85601 4.95421 4.99150 5.08849 5.24842 5.36616 5.54430 5.65129 5.71999 5.77841 5.83468 6.24490 6.60676 6.79173 6.92004 7.03380 7.47763 8.94977 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.038473 B = 0.005501 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.615846 B = 5088.388842 C = 5489.785850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.218 3.782 3 H 0.002 0.998 4 C -0.517 4.517 5 H 0.057 0.943 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.683 5.683 13 C 0.072 3.928 14 C -0.112 4.112 15 C -0.132 4.132 16 C -0.020 4.020 17 C -0.166 4.166 18 C 0.085 3.915 19 N -0.517 5.517 20 C 0.082 3.918 21 C -0.171 4.171 22 H 0.016 0.984 23 H 0.030 0.970 24 H 0.062 0.938 25 H 0.261 0.739 26 H 0.331 0.669 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.163 0.837 32 H 0.181 0.819 33 H 0.166 0.834 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 -1.770 -16.032 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.109 3.891 3 H 0.020 0.980 4 C -0.556 4.556 5 H 0.075 0.925 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.312 5.312 13 C -0.057 4.057 14 C -0.131 4.131 15 C -0.150 4.150 16 C -0.028 4.028 17 C -0.186 4.186 18 C -0.071 4.071 19 N -0.227 5.227 20 C -0.074 4.074 21 C -0.191 4.191 22 H 0.035 0.965 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.154 0.846 30 H 0.174 0.826 31 H 0.180 0.820 32 H 0.198 0.802 33 H 0.183 0.817 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.845 -0.991 -15.806 15.859 hybrid contribution -0.029 -0.480 1.006 1.115 sum -0.875 -1.470 -14.799 14.898 Atomic orbital electron populations 1.22207 1.00288 0.98991 0.99647 1.18920 0.89744 0.92748 0.87671 0.98038 1.21433 1.30594 1.12603 0.90970 0.92501 1.25757 0.95405 0.95865 1.02024 1.70010 1.37964 1.24320 1.24118 0.85534 0.78702 0.78633 0.78273 1.19739 1.21040 1.19598 1.60644 1.57767 1.09553 1.03257 1.21368 0.98822 0.95522 0.89941 1.23404 0.98759 0.98188 0.92733 1.21821 0.94237 0.99455 0.99519 1.19754 0.94985 0.93594 0.94446 1.22568 0.93163 1.02346 1.00495 1.23167 0.99335 0.88680 0.95903 1.67642 1.27054 1.17659 1.10304 1.22932 0.88611 1.00722 0.95131 1.22531 1.00960 0.94815 1.00760 0.96523 0.95081 0.91916 0.92969 0.85240 0.91896 0.94838 0.84620 0.82576 0.81976 0.80249 0.81679 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.53 8.94 71.98 0.64 -6.88 16 2 C 0.22 11.16 2.57 44.17 0.11 11.27 16 3 H 0.00 0.10 7.80 -2.39 -0.02 0.08 16 4 C -0.52 -28.96 8.84 25.60 0.23 -28.73 16 5 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 6 C 0.01 0.42 5.30 84.66 0.45 0.87 16 7 N -0.92 -53.83 11.32 21.45 0.24 -53.59 16 8 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 N -0.68 -28.73 6.22 -499.46 -3.11 -31.84 16 13 C 0.07 2.48 4.34 85.56 0.37 2.85 16 14 C -0.11 -2.91 9.73 24.53 0.24 -2.67 16 15 C -0.13 -2.87 9.83 23.64 0.23 -2.64 16 16 C -0.02 -0.48 5.08 -19.91 -0.10 -0.58 16 17 C -0.17 -3.54 9.89 22.62 0.22 -3.32 16 18 C 0.09 1.95 11.17 84.60 0.95 2.89 16 19 N -0.52 -14.42 10.35 -196.18 -2.03 -16.45 16 20 C 0.08 2.20 11.17 84.60 0.94 3.15 16 21 C -0.17 -4.54 7.47 22.62 0.17 -4.37 16 22 H 0.02 0.73 7.45 -2.39 -0.02 0.72 16 23 H 0.03 1.46 8.13 -2.39 -0.02 1.44 16 24 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 25 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 26 H 0.33 13.27 8.46 -89.70 -0.76 12.51 16 27 H 0.06 2.28 7.99 -2.38 -0.02 2.26 16 28 H 0.03 1.20 4.27 -2.39 -0.01 1.19 16 29 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 30 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.17 3.81 8.06 -2.91 -0.02 3.78 16 34 H 0.14 3.53 6.74 -2.91 -0.02 3.51 16 Total: -1.00 -64.03 286.40 1.92 -62.11 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.33 Total: 21.84 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 4.46 Total: -28.16 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -4.89 Total: -101.88 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -64.03 1.92 -62.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393635147.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.233 kcal (2) G-P(sol) polarization free energy of solvation -64.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds