Wall clock time and date at job start Mon Mar 30 2020 03:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47507 * 2 1 4 4 C 1.50694 * 109.47140 * 120.00566 * 2 1 3 5 5 H 1.08010 * 120.00399 * 119.99513 * 4 2 1 6 6 C 1.37879 * 119.99990 * 299.99745 * 4 2 1 7 7 N 1.31515 * 119.99878 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00054 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47098 * 89.99759 * 8 6 4 10 10 H 1.48501 * 109.47044 * 210.00089 * 8 6 4 11 11 H 1.48504 * 109.46739 * 329.99798 * 8 6 4 12 12 N 1.46901 * 109.46854 * 240.00495 * 2 1 3 13 13 C 1.46893 * 111.00404 * 85.00366 * 12 2 1 14 14 C 1.50701 * 109.47583 * 180.02562 * 13 12 2 15 15 C 1.32586 * 120.00132 * 124.99749 * 14 13 12 16 16 C 1.47787 * 120.00039 * 180.02562 * 15 14 13 17 17 C 1.39959 * 120.92531 * 179.97438 * 16 15 14 18 18 C 1.37935 * 118.99511 * 179.97438 * 17 16 15 19 19 N 1.31932 * 120.90200 * 0.02562 * 18 17 16 20 20 C 1.31947 * 122.05743 * 359.97438 * 19 18 17 21 21 C 1.37933 * 120.89640 * 359.97438 * 20 19 18 22 22 H 1.09002 * 109.47086 * 300.00139 * 1 2 3 23 23 H 1.09006 * 109.47319 * 59.99330 * 1 2 3 24 24 H 1.08997 * 109.47674 * 179.97438 * 1 2 3 25 25 H 0.97003 * 119.99770 * 179.97438 * 7 6 4 26 26 H 1.00897 * 110.99954 * 321.04755 * 12 2 1 27 27 H 1.08999 * 109.47029 * 59.99733 * 13 12 2 28 28 H 1.09003 * 109.47114 * 300.00325 * 13 12 2 29 29 H 1.08007 * 119.99615 * 304.99970 * 14 13 12 30 30 H 1.07998 * 119.99967 * 0.02562 * 15 14 13 31 31 H 1.08003 * 120.50267 * 0.02562 * 17 16 15 32 32 H 1.08004 * 119.54767 * 179.72505 * 18 17 16 33 33 H 1.07991 * 119.55146 * 180.02562 * 20 19 18 34 34 H 1.07994 * 120.49938 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5887 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3213 -1.1207 4.0079 9 1 3.6296 -0.5464 4.4123 10 1 1.3431 -0.9497 5.1120 11 1 2.4856 -2.5666 3.7117 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5872 -0.5216 -3.5561 15 6 1.8776 -0.5257 -4.6761 16 6 2.3724 -1.2560 -5.8618 17 6 1.6388 -1.2736 -7.0536 18 6 2.1383 -1.9675 -8.1360 19 7 3.2890 -2.6082 -8.0577 20 6 4.0118 -2.6173 -6.9538 21 6 3.5881 -1.9486 -5.8243 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 0.7090 1.1612 3.4845 26 1 1.4494 -1.4978 -1.4102 27 1 2.7589 1.0462 -2.1181 28 1 1.0871 0.6165 -2.5525 29 1 3.5271 -1.0518 -3.5104 30 1 0.9380 0.0048 -4.7219 31 1 0.6964 -0.7510 -7.1250 32 1 1.5775 -1.9907 -9.0587 33 1 4.9482 -3.1549 -6.9348 34 1 4.1851 -1.9600 -4.9244 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393635148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:38 Heat of formation + Delta-G solvation = 45.254975 kcal Electronic energy + Delta-G solvation = -14901.255633 eV Core-core repulsion = 12413.075786 eV Total energy + Delta-G solvation = -2488.179847 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.11000 -36.70190 -34.83858 -32.66870 -31.39210 -30.81549 -28.17518 -25.26910 -24.82541 -23.63309 -22.29987 -20.24672 -19.52732 -17.19206 -16.42248 -16.05813 -15.62316 -14.81964 -14.62605 -14.00940 -13.85061 -13.54365 -13.46856 -13.11547 -12.60083 -11.93192 -11.76442 -11.47803 -11.19900 -10.93934 -10.83290 -10.73019 -10.50073 -10.17602 -9.92359 -9.58568 -9.28268 -9.07144 -8.49842 -8.39136 -7.33652 -6.01675 -4.05247 0.77209 1.05018 2.54149 3.31320 3.37493 3.41675 3.84157 4.34506 4.41047 4.53203 4.65247 4.96871 5.04471 5.14302 5.30067 5.42540 5.49350 5.55247 5.69256 5.87263 5.95875 6.12172 6.19451 6.57606 6.62634 6.66807 6.73289 6.79909 7.03850 7.30530 7.69393 7.83899 7.87469 8.21841 8.45906 8.55271 9.01793 9.60295 11.05408 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.054201 B = 0.003922 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.471296 B = 7137.921295 C = 7486.528728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.034 0.966 4 C -0.496 4.496 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.680 5.680 13 C 0.079 3.921 14 C -0.086 4.086 15 C -0.161 4.161 16 C 0.007 3.993 17 C -0.173 4.173 18 C 0.097 3.903 19 N -0.498 5.498 20 C 0.100 3.900 21 C -0.175 4.175 22 H 0.090 0.910 23 H 0.005 0.995 24 H 0.028 0.972 25 H 0.260 0.740 26 H 0.327 0.673 27 H 0.080 0.920 28 H 0.027 0.973 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -2.804 -16.250 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.050 4.050 14 C -0.105 4.105 15 C -0.180 4.180 16 C -0.001 4.001 17 C -0.193 4.193 18 C -0.059 4.059 19 N -0.208 5.208 20 C -0.056 4.056 21 C -0.195 4.195 22 H 0.108 0.892 23 H 0.024 0.976 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.143 0.857 27 H 0.098 0.902 28 H 0.045 0.955 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.152 0.848 32 H 0.170 0.830 33 H 0.172 0.828 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.457 -3.052 -16.664 17.118 hybrid contribution -1.078 0.216 1.428 1.802 sum 1.379 -2.836 -15.236 15.559 Atomic orbital electron populations 1.22435 1.00628 0.99269 1.00535 1.19208 0.89696 0.94467 0.86350 0.94773 1.21153 1.30302 1.12519 0.89548 0.91885 1.24960 0.95290 0.95217 0.99091 1.69883 1.37257 1.23216 1.23408 0.86488 0.78455 0.80031 0.82352 1.20724 1.21395 1.19900 1.60830 1.58270 1.08973 1.02935 1.21073 0.98680 0.95750 0.89528 1.23758 0.98413 0.94770 0.93560 1.21592 1.01147 1.02877 0.92354 1.19520 0.93155 0.93664 0.93731 1.22251 1.01454 1.02001 0.93615 1.22635 0.92209 0.92862 0.98169 1.67625 1.06715 1.18796 1.27666 1.22656 0.98737 0.95986 0.88186 1.22371 0.97180 0.99408 1.00557 0.89170 0.97642 0.95280 0.93026 0.85652 0.90212 0.95479 0.86359 0.86105 0.84803 0.82966 0.82826 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.94 37.16 0.33 -3.68 16 2 C 0.21 5.19 2.57 -68.87 -0.18 5.01 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.52 16 4 C -0.50 -13.60 8.84 -34.44 -0.30 -13.90 16 5 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.47 11.32 55.43 0.63 -24.84 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 12 N -0.68 -13.98 6.22 -109.23 -0.68 -14.66 16 13 C 0.08 1.33 5.93 -4.98 -0.03 1.30 16 14 C -0.09 -1.18 9.22 -36.21 -0.33 -1.52 16 15 C -0.16 -2.00 9.55 -37.58 -0.36 -2.36 16 16 C 0.01 0.09 5.90 -104.70 -0.62 -0.53 16 17 C -0.17 -1.84 9.89 -39.05 -0.39 -2.23 16 18 C 0.10 1.03 11.17 -17.62 -0.20 0.84 16 19 N -0.50 -6.10 10.35 -13.36 -0.14 -6.24 16 20 C 0.10 1.11 11.17 -17.61 -0.20 0.92 16 21 C -0.18 -2.00 9.47 -39.04 -0.37 -2.37 16 22 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 23 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 24 H 0.03 0.66 8.13 -51.93 -0.42 0.23 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.33 6.45 8.46 -39.29 -0.33 6.11 16 27 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 28 H 0.03 0.45 7.11 -51.93 -0.37 0.09 16 29 H 0.12 1.55 6.13 -52.48 -0.32 1.23 16 30 H 0.12 1.41 7.87 -52.49 -0.41 0.99 16 31 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 32 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 33 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.14 1.40 6.30 -52.49 -0.33 1.07 16 LS Contribution 290.37 15.07 4.38 4.38 Total: -1.00 -29.38 290.37 -8.10 -37.47 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.53 Total: 4.70 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.73 Total: -17.10 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.19 Total: -45.74 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.38 -8.10 -37.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393635148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.729 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds