Wall clock time and date at job start Mon Mar 30 2020 03:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47507 * 2 1 4 4 C 1.50694 * 109.47140 * 120.00566 * 2 1 3 5 5 H 1.08010 * 120.00399 * 119.99513 * 4 2 1 6 6 C 1.37879 * 119.99990 * 299.99745 * 4 2 1 7 7 N 1.31515 * 119.99878 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00054 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47098 * 89.99759 * 8 6 4 10 10 H 1.48501 * 109.47044 * 210.00089 * 8 6 4 11 11 H 1.48504 * 109.46739 * 329.99798 * 8 6 4 12 12 N 1.46901 * 109.46854 * 240.00495 * 2 1 3 13 13 C 1.46893 * 111.00404 * 85.00366 * 12 2 1 14 14 C 1.50701 * 109.47583 * 180.02562 * 13 12 2 15 15 C 1.32586 * 120.00132 * 124.99749 * 14 13 12 16 16 C 1.47787 * 120.00039 * 180.02562 * 15 14 13 17 17 C 1.39959 * 120.92531 * 179.97438 * 16 15 14 18 18 C 1.37935 * 118.99511 * 179.97438 * 17 16 15 19 19 N 1.31932 * 120.90200 * 0.02562 * 18 17 16 20 20 C 1.31947 * 122.05743 * 359.97438 * 19 18 17 21 21 C 1.37933 * 120.89640 * 359.97438 * 20 19 18 22 22 H 1.09002 * 109.47086 * 300.00139 * 1 2 3 23 23 H 1.09006 * 109.47319 * 59.99330 * 1 2 3 24 24 H 1.08997 * 109.47674 * 179.97438 * 1 2 3 25 25 H 0.97003 * 119.99770 * 179.97438 * 7 6 4 26 26 H 1.00897 * 110.99954 * 321.04755 * 12 2 1 27 27 H 1.08999 * 109.47029 * 59.99733 * 13 12 2 28 28 H 1.09003 * 109.47114 * 300.00325 * 13 12 2 29 29 H 1.08007 * 119.99615 * 304.99970 * 14 13 12 30 30 H 1.07998 * 119.99967 * 0.02562 * 15 14 13 31 31 H 1.08003 * 120.50267 * 0.02562 * 17 16 15 32 32 H 1.08004 * 119.54767 * 179.72505 * 18 17 16 33 33 H 1.07991 * 119.55146 * 180.02562 * 20 19 18 34 34 H 1.07994 * 120.49938 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5887 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3213 -1.1207 4.0079 9 1 3.6296 -0.5464 4.4123 10 1 1.3431 -0.9497 5.1120 11 1 2.4856 -2.5666 3.7117 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5872 -0.5216 -3.5561 15 6 1.8776 -0.5257 -4.6761 16 6 2.3724 -1.2560 -5.8618 17 6 1.6388 -1.2736 -7.0536 18 6 2.1383 -1.9675 -8.1360 19 7 3.2890 -2.6082 -8.0577 20 6 4.0118 -2.6173 -6.9538 21 6 3.5881 -1.9486 -5.8243 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 0.7090 1.1612 3.4845 26 1 1.4494 -1.4978 -1.4102 27 1 2.7589 1.0462 -2.1181 28 1 1.0871 0.6165 -2.5525 29 1 3.5271 -1.0518 -3.5104 30 1 0.9380 0.0048 -4.7219 31 1 0.6964 -0.7510 -7.1250 32 1 1.5775 -1.9907 -9.0587 33 1 4.9482 -3.1549 -6.9348 34 1 4.1851 -1.9600 -4.9244 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393635148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:38 Heat of formation + Delta-G solvation = 27.170397 kcal Electronic energy + Delta-G solvation = -14902.039839 eV Core-core repulsion = 12413.075786 eV Total energy + Delta-G solvation = -2488.964053 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.95129 -38.23467 -36.15353 -34.39385 -32.36184 -32.02936 -29.73697 -27.25650 -26.16805 -24.51062 -23.37066 -22.14108 -20.57660 -18.46521 -17.97490 -17.06845 -16.73274 -16.44494 -16.04765 -15.31273 -15.02543 -14.81757 -14.58340 -14.24406 -14.11437 -13.59609 -13.36111 -12.94043 -12.81624 -12.59737 -12.27834 -12.15956 -12.08220 -11.83202 -11.76045 -11.05931 -10.48769 -10.44061 -10.08877 -9.50668 -9.01028 -8.10010 -6.21304 -0.15695 0.24147 1.44117 1.44542 1.54604 1.56831 2.44703 2.99248 3.18570 3.46907 3.61276 3.78883 3.92274 4.13212 4.20069 4.29241 4.38763 4.66277 4.68778 4.73747 4.79711 4.88736 4.93196 5.03829 5.09802 5.20501 5.37913 5.62289 5.67870 5.73251 5.80023 5.81841 6.26370 6.61818 6.80371 6.93412 7.05125 7.48830 8.95494 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.054201 B = 0.003922 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.471296 B = 7137.921295 C = 7486.528728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.214 3.786 3 H 0.004 0.996 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.684 5.684 13 C 0.084 3.916 14 C -0.104 4.104 15 C -0.136 4.136 16 C -0.015 4.015 17 C -0.170 4.170 18 C 0.091 3.909 19 N -0.519 5.519 20 C 0.092 3.908 21 C -0.181 4.181 22 H 0.062 0.938 23 H 0.027 0.973 24 H 0.032 0.968 25 H 0.261 0.739 26 H 0.333 0.667 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.123 0.877 30 H 0.132 0.868 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.175 0.825 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 -3.567 -17.382 17.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.105 3.895 3 H 0.022 0.978 4 C -0.555 4.555 5 H 0.074 0.926 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.314 5.314 13 C -0.044 4.044 14 C -0.123 4.123 15 C -0.155 4.155 16 C -0.023 4.023 17 C -0.190 4.190 18 C -0.065 4.065 19 N -0.229 5.229 20 C -0.064 4.064 21 C -0.200 4.200 22 H 0.081 0.919 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.150 0.850 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.141 0.859 30 H 0.149 0.851 31 H 0.175 0.825 32 H 0.197 0.803 33 H 0.192 0.808 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.379 -3.821 -17.815 18.375 hybrid contribution -1.064 0.457 1.636 2.005 sum 1.316 -3.364 -16.179 16.577 Atomic orbital electron populations 1.22242 0.99901 0.99300 1.00185 1.18973 0.90157 0.92853 0.87512 0.97759 1.21472 1.30468 1.12544 0.91063 0.92634 1.25726 0.95442 0.95896 1.01928 1.70007 1.38017 1.24288 1.24022 0.85511 0.77928 0.79078 0.78811 1.20327 1.20942 1.19322 1.60660 1.58019 1.09556 1.03168 1.21006 0.98787 0.95259 0.89389 1.23419 0.99416 0.96540 0.92889 1.21703 1.00723 1.01141 0.91884 1.19644 0.93972 0.94614 0.94116 1.22532 1.02022 1.01486 0.92928 1.23130 0.91926 0.92190 0.99286 1.67672 1.07549 1.19421 1.28235 1.23027 0.99498 0.96036 0.87847 1.22546 0.97218 0.99233 1.01041 0.91947 0.95452 0.94918 0.92983 0.85016 0.91312 0.95134 0.85890 0.85070 0.82543 0.80271 0.80769 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.42 8.94 71.98 0.64 -6.78 16 2 C 0.21 10.66 2.57 44.17 0.11 10.78 16 3 H 0.00 0.25 7.80 -2.39 -0.02 0.23 16 4 C -0.52 -28.56 8.84 25.60 0.23 -28.33 16 5 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.45 5.30 84.65 0.45 0.90 16 7 N -0.92 -52.94 11.32 21.45 0.24 -52.70 16 8 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 N -0.68 -28.03 6.22 -499.50 -3.11 -31.13 16 13 C 0.08 2.81 5.93 85.56 0.51 3.32 16 14 C -0.10 -2.74 9.22 24.53 0.23 -2.51 16 15 C -0.14 -3.12 9.55 23.64 0.23 -2.89 16 16 C -0.02 -0.34 5.90 -19.91 -0.12 -0.46 16 17 C -0.17 -3.17 9.89 22.62 0.22 -2.94 16 18 C 0.09 1.70 11.17 84.61 0.94 2.64 16 19 N -0.52 -11.71 10.35 -196.18 -2.03 -13.74 16 20 C 0.09 1.88 11.17 84.60 0.95 2.82 16 21 C -0.18 -3.83 9.47 22.62 0.21 -3.62 16 22 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 23 H 0.03 1.12 7.45 -2.38 -0.02 1.11 16 24 H 0.03 1.47 8.13 -2.39 -0.02 1.45 16 25 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 26 H 0.33 12.91 8.46 -89.70 -0.76 12.15 16 27 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 28 H 0.03 0.99 7.11 -2.39 -0.02 0.98 16 29 H 0.12 3.12 6.13 -2.91 -0.02 3.10 16 30 H 0.13 2.72 7.87 -2.91 -0.02 2.70 16 31 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.18 2.63 8.06 -2.92 -0.02 2.60 16 34 H 0.15 2.77 6.30 -2.91 -0.02 2.75 16 Total: -1.00 -62.19 290.37 2.07 -60.12 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.33 Total: 18.79 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: 4.60 Total: -27.08 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -4.89 Total: -97.57 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -62.19 2.07 -60.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393635148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.295 kcal (2) G-P(sol) polarization free energy of solvation -62.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds